Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110528335 |
| gene name | LOC106583536 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 67865136 ~ 67879560 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0045766 | positive regulation of angiogenesis | biological_process |
| GO:0048848 | neurohypophysis morphogenesis | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004990 | oxytocin receptor activity | molecular_function |
| GO:0005000 | vasopressin receptor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021610325.2 | False | 4522 | mRNA | 0.43 | 3 | 67865136 | 67879560 |
| TU726814 | True | 596 | lncRNA | 0.43 | 2 | 67866138 | 67866796 |
67,860,000
67,862,000
67,864,000
67,866,000
67,868,000
67,870,000
67,872,000
67,874,000
67,876,000
67,878,000
67,880,000
67,882,000
67,884,000
67,886,000
67,888,000
67,890,000
67,892,000
NC_048571.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528333 | LOC106583392 | coding | downstream | 18835 | 67833830 ~ 67846301 (-) |
| LOC110528327 | LOC106583542 | coding | downstream | 192291 | 67654547 ~ 67672845 (-) |
| LOC110528326 | LOC105026480 | coding | downstream | 270548 | 67563946 ~ 67594588 (-) |
| LOC110528322 | LOC106583546 | coding | downstream | 302381 | 67542492 ~ 67562755 (-) |
| trub2 | trub2 | coding | downstream | 339697 | 67521783 ~ 67525439 (-) |
| LOC110528336 | LOC106583535 | coding | upstream | 90449 | 67970009 ~ 68059308 (-) |
| LOC110527140 | LOC106565339 | coding | upstream | 299296 | 68178856 ~ 68179755 (-) |
| LOC110528338 | stau1 | coding | upstream | 319375 | 68198935 ~ 68206574 (-) |
| LOC110528340 | LOC106583529 | coding | upstream | 327272 | 68206832 ~ 68221519 (-) |
| LOC110528343 | c209d | coding | upstream | 442984 | 68322544 ~ 68329223 (-) |
| G639444 | NA | non-coding | downstream | 747 | 67861251 ~ 67864389 (-) |
| G639412 | NA | non-coding | downstream | 76042 | 67787739 ~ 67789094 (-) |
| G639279 | NA | non-coding | downstream | 265250 | 67594652 ~ 67599886 (-) |
| G639286 | NA | non-coding | downstream | 305372 | 67519217 ~ 67559764 (-) |
| G639285 | NA | non-coding | downstream | 368954 | 67495503 ~ 67496182 (-) |
| G639471 | NA | non-coding | upstream | 385 | 67879945 ~ 67880169 (-) |
| G639477 | NA | non-coding | upstream | 8356 | 67887916 ~ 67888264 (-) |
| G639516 | NA | non-coding | upstream | 63874 | 67943434 ~ 67943692 (-) |
| G639526 | NA | non-coding | upstream | 72344 | 67951904 ~ 67952115 (-) |
| G639527 | NA | non-coding | upstream | 72615 | 67952175 ~ 67952399 (-) |
| G639226 | LOC106583551 | other | downstream | 449046 | 67414856 ~ 67416090 (-) |
| LOC110528308 | LOC106583558 | other | downstream | 589596 | 67245800 ~ 67276081 (-) |
| LOC110528300 | LOC106583565 | other | downstream | 786077 | 67055190 ~ 67079126 (-) |
| G637722 | NA | other | downstream | 1588056 | 66276782 ~ 66277080 (-) |
| G637669 | NA | other | downstream | 1687241 | 66175960 ~ 66177895 (-) |
| G641364 | NA | other | upstream | 915034 | 68794594 ~ 68809149 (-) |
| G641913 | NA | other | upstream | 1928483 | 69808043 ~ 69811260 (-) |
| G642089 | NA | other | upstream | 2178437 | 70057997 ~ 70061255 (-) |
| G643054 | NA | other | upstream | 2375785 | 70255345 ~ 70258882 (-) |
| G643159 | NA | other | upstream | 2527473 | 70407033 ~ 70408118 (-) |
| G639463 | NA | non-coding | upstream | 5085 | 67871881 ~ 67872081 (-) |
