LOC110528357 (LOC106583514)


Basic Information

Item Value
gene id LOC110528357
gene name LOC106583514
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 69398112 ~ 69403541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610371.2
GCAATCATTTTATCAACCCCCCTCCCATTTGATCACATAATCTATATAAAAGGACAAACGAAACTTCTCATCACTGGTTCTTTCATCATTGAAATTCCCAAGAAGTTAAGATGTCTAAGCTGACAATCTTAGCAGgctTGTGCCTGGTGCTGTGCCAGTTGGGTGCTTCCACCTCAGTGTCCACCACAGCTGCAGCCTCTCCCAAGATGGTGTGCTACTTCACCAATTGGTCTCAATACAGACCAGACAAAGGGAAGTACAAGCCCGAGAACGTGGACCCCCACCTGTGCACTCACCTGATCTACGCTTTCTCCATCATCAACAGCCGCAACGAGCTGGTCACATACGAGTGGAATGATGATGTCCTCTACAAGTCTTTCAACGCCTTGAAGACCAAGAACCCTCATCTTAAGACTCTGCTGGCTGTCGGAGGATGGAACTTCGGTTCTTCCCAGTTCTCCATCATGGTGAGCAATGCTGCCAACCGTAATACATTCATCCAGTCATCCATCAGCTTCCTGAGGACTCATGGCTTTGACGGGCTGGACCTGGACTGGGAGTACCCTGGAGCCCGAGGGAGCCCTCCAGAGGACAAGAAGAGGTTCACTCTTTTGTGCCAGGAGCTTGTGGCTGCCTACGCAGCTGAGGCCAAGTCCACCGGCAATGCCCAGCTCATGCTGACTGCTGCCGTGTCCGCTGGAAAGGGAACCATCGACGCTGGATATGAGATTGCTGAGATCGCCAAGTCTCTAGACTTCATCAACGTGATGACCTATGACTTCCACGGAACTTGGGAGCAATTCACTGGACACAACAGCCCACTCTACCGTGGTGCTCATGACACGGGAGACCTTATCTTCTTCAACACTgaCTATGCCATGAAGTACTGGAGAGACAATGGCACCCCAGTGGAGAAGCTGAACATGGGCTTTGCCTCCTATGGTCGTACCTTCCGCCTTACATCATCTGACACCAGTGTTGGAGCACCAGCTAGTGGCCCCGCCTCCGCCGGGCCCTATACCCGCGAGGCCGGCTTCTGGGCATACTATGAGATCTGCACCTTTGTGAAGGGCACAACAGTTGAGATGATTGCAGACCAGATGGTTCCTTATGCCTACAAGGGCAATGAGTGGGTTGGATTTGACAACAGGCAGAGCTACGAGACCAAGGTCCGCTACATGAAGGCCAACAAGTTTGGCGGGGCCTTCGTGTGGGCCCTGGATCTTGATGACTTCGCCAACCAGTTCTGCGCCGAGGGTAACCACCCTCTGCTGGGACATCTGCGCAACCTTCTTGACATTGAGCTGCCCCCTCTGCCCCCTACCACCACCCCCAAACCTGGCTCAGTCACCACCACACGCCCCACAACCACACGCCCCACCACCCACGCCCCTGGGACCGGCTTCTGCAACGGCAAGCCTGATGGCATCTACGCCAACGCAGAGGACAACAACTCCTTCTACATGTGCGCTGGTGGCATCACTAACCTCAGCAAATGCGGCAGCGGCACCGTCTTCAACGATAGCTGCAAGTGCTGTGTGTGGCCTTGAGCGTGTTGTTAGGGAGTGAATTTATGATTTGTGATTATAATttcagatccccattagctgttgaagAAAAAGCAGCTTTCGTTCCTAGCGTCCATTAGCATCGTTAATGCTAAAGCTAACACCAACTTTGTATTTACCAACTTCAAGTGTTATCGTCGTGAAAAAAAGGTTTTGTGGAAGAATACTTTCTGTAGACAATAGTTGAGATGCATTCAGTTGAGTCTTGCATTGAGTTTAGTAGTAGTGGAAATTGGTTGATTTGAATGTGCATTTAACTTTAGAAGCAtatgaataaaacattttcctgcTTTA

Function

NR:

description
acidic mammalian chitinase-like

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610371.2 True 1862 mRNA 0.51 11 69398112 69403541

Neighbor

gene id symbol gene type direction distance location
LOC110528356 LOC106583517 coding downstream 6478 69382887 ~ 69391634 (-)
LOC110528355 LOC106583518 coding downstream 19186 69377221 ~ 69378926 (-)
fmoda LOC100286414 coding downstream 121176 69272086 ~ 69276936 (-)
slc6a14 LOC106583390 coding downstream 140350 69228351 ~ 69257762 (-)
LOC110528351 LOC106583522 coding downstream 172672 69139515 ~ 69225440 (-)
chia.1 LOC106583513 coding upstream 15867 69419408 ~ 69423734 (-)
cntn2 LOC106583505 coding upstream 26151 69429692 ~ 69500328 (-)
LOC110528361 nfasc coding upstream 150618 69554159 ~ 69682851 (-)
csf1a csf1 coding upstream 678492 70082033 ~ 70151213 (-)
LOC110528368 abec2 coding upstream 1089619 70493160 ~ 70498739 (-)
G641654 NA non-coding downstream 36616 69275949 ~ 69361496 (-)
G641629 NA non-coding downstream 129005 69233534 ~ 69269107 (-)
G641503 rrp9 non-coding downstream 357470 69039407 ~ 69040642 (-)
G641484 NA non-coding downstream 395196 69002018 ~ 69002916 (-)
G641406 NA non-coding downstream 504603 68892702 ~ 68893509 (-)
G641783 NA non-coding upstream 99352 69502893 ~ 69503215 (-)
G641784 NA non-coding upstream 99782 69503323 ~ 69503546 (-)
G641805 LOC106600263 non-coding upstream 136520 69540061 ~ 69540409 (-)
G641807 NA non-coding upstream 140631 69544172 ~ 69544394 (-)
G641820 NA non-coding upstream 183861 69587402 ~ 69587794 (-)
G641364 NA other downstream 588963 68794594 ~ 68809149 (-)
G639226 LOC106583551 other downstream 1982022 67414856 ~ 67416090 (-)
LOC110528308 LOC106583558 other downstream 2122572 67245800 ~ 67276081 (-)
LOC110528300 LOC106583565 other downstream 2319053 67055190 ~ 67079126 (-)
G637722 NA other downstream 3121032 66276782 ~ 66277080 (-)
G641913 NA other upstream 404502 69808043 ~ 69811260 (-)
G642089 NA other upstream 654456 70057997 ~ 70061255 (-)
G643054 NA other upstream 851804 70255345 ~ 70258882 (-)
G643159 NA other upstream 1003492 70407033 ~ 70408118 (-)
LOC110528382 LOC106583486 other upstream 1476370 70877584 ~ 70881519 (-)

Expression


Co-expression Network