XLOC_002498 (opn4xa)


Basic Information

Item Value
gene id XLOC_002498
gene name opn4xa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1294463 ~ 1320114 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004668
ATGGAGGAGTCGAAGGATATGGATCGAGGCTTTTTCAGGAAAGTGGACGTTCCTGATCATGCACACTACATAGTGGCGTTTTTTGTGGCCGTCATCGGGGCTCTAGGAGTGATCGGAAACCTGCTGGTCATGTACGCCTTCTTTAGtaACAAGAAGCTGCGGACGCCTCCAAACTACTTCATCATGAATCTGGCAGTGAGTGACTTCCTCATGGCCATCACTCAGTCACCCATCTTCTTCATCAACTGCATGTACAAGGAGTGGGTGTTCGGGGAAATGGGCTGTAAGATGTACGCCTTCTGCGGAGCTCTGTTTGGGATCACATCCATGATCAACCTTCTGGCCATTTCTATCGACCGCTACATCGTGATCACCAAACCACTGCAGGCCATCCGCTGGACATCGGGACGGCGAACACTCATTATTATCCTCGTGGTCTGGATCTACTCGCTGGCCTGGAGTCTGGCGCCACTTATAGGATGGAGTTCCTACATCCCAGAGGGCCTCATGACCTCCTGCACATGGGACTATGTGACGTCCACTCCTGCCAACAAGAGCTACACCTTGATGCTCTGCTGTTTCGTGTTCTTCATTCCTCTAGGGATCATCTCGTACTGCTACTTCTTCATGTTCCTCGCCATTCGGAGCGCAAGCAGGGATGTGGAGAAGCTGGGTAGCCATGTGAGGAAGACCACCCTCATCCAACAGCAGTCCATAAAGACGGAGTGGAAGCTGGCCAAGATTGCGTTTGTGGTCATCATTGTGTTTGTGCTGTCCTGGTCTCCGTACGCCTGCGTCACACTCATCGCCTGGGCTGGATACAGCCACGTTCTTTCTCCATATTCCAAGGCAGTTCCTGCGGTGATTGCCAAGGCATCAGCCATATACAATCCCTTCATCTACGCCATCATACGCTCCAAATACAGAGACACGCTGGCCGAGAAGGTACCATGTCTGCATTTCCTAGCGCAGTCATCGCGTAAAGATGTCTCAGTGTCCAACAGCGAGTCTTCCTTCAGGGAGCACATGCTGAGCCGACAGTCCTCGGGGTCAAAGGCCAAGTTCCAGCGCATCTCCTCCATGTCCACAGCAGATACGGTCTGGAGTGATGTAGAAATAGACCCTGTGGACCAAAAGAGCCAGACGATCAGAAACTCACAGTCAGCCAGTCTGCTGAGAGACGACAAATGGAAAGCGCAAACCAAACAGGACTATCAGAACGACAGGGAGAGCAGTGAAGAGAAGTCTGCAATCACGGACAGTGGCGGCTCCTTGAGCGGCGGAGGCCTTGACTTGGTGTCCGAATCCATCAACATGGCCACTGTCCCTCTCCTCATGGCCAAGAACACTGGAGAGGAGGAccaggaggaggaagaggacgaGACTCTGACGGGACAGCAGGACAGCAGGTCTCTGAGCCCCATCAGCAACGACCTGCCTTTTTACCAGGACACAGAGGAGCCACACATCACCCTCAGCCCCACATCAGCGGAGCAGCAAAGCACGGAGACCAGAGAAAACAATCTGATCCTGGAGCTCAAGAGTCTGAACTGCTCCAGCGAACTCCTGGAGTCTGTGGAGAAGTTTCTCTCCTGA

Function

symbol description
opn4xa Enables photoreceptor activity. Acts upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; heart; integument; testis; and visual system.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110622-1 Enables photoreceptor activity. Acts upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; heart; integument; testis; and visual system.

Ensembl:

ensembl_id ENSDARG00000079129

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004668 True 1596 mRNA 0.53 9 1294463 1320114

Neighbor

gene id symbol gene type direction distance location
XLOC_002497 pdlim5b coding downstream 18417 1187653 ~ 1276046 (-)
XLOC_002496 bmpr1bb coding downstream 114149 1082961 ~ 1180314 (-)
XLOC_002494 glis3 coding downstream 604293 644574 ~ 690170 (-)
XLOC_002495 NA coding downstream 637057 657051 ~ 657406 (-)
XLOC_002493 rfx3 coding downstream 652854 600164 ~ 641609 (-)
XLOC_002499 NA coding upstream 103127 1423241 ~ 1433140 (-)
XLOC_002500 WDR70 coding upstream 114842 1434956 ~ 1523289 (-)
XLOC_002501 CABZ01066320.2 coding upstream 221149 1541263 ~ 1544095 (-)
XLOC_002502 CABZ01066320.1 coding upstream 224049 1544163 ~ 1552789 (-)
XLOC_002503 nup155 coding upstream 277156 1597270 ~ 1636452 (-)
XLOC_002492 NA non-coding downstream 746262 546202 ~ 548201 (-)
XLOC_002491 NA non-coding downstream 872810 415997 ~ 421653 (-)
XLOC_002489 NA non-coding downstream 935756 356555 ~ 358707 (-)
XLOC_002488 NA non-coding downstream 939806 354093 ~ 354657 (-)
XLOC_002504 NA non-coding upstream 346228 1666342 ~ 1667630 (-)
XLOC_002505 NA non-coding upstream 349030 1669144 ~ 1718637 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000168_00064868_00079828 OPN4XA, OPN4X1B2 coding CI01000168 null 64741 ~ 80101 (+)