LOC110528402 (LOC106583472)


Basic Information

Item Value
gene id LOC110528402
gene name LOC106583472
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 71237011 ~ 71239592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610443.2
TGTATCTCGAACGCACCCAGAATCTACGCATTCTACGTTTCTCGACTGTTTACTAGCCATCGGACTACGATTTGGAAACATTGCCTAAAACGCCAATACGGTGGTATTTTATTCACAAAATGACAAAGTTGAAGCTGCTAAATGTGTTTTTAAGTGAGAGATTAGCTGCAGCTGCTAAAGAAATATTTATAGAGGTGGAAAATATTTTAATCGAATACCAGGAAGAAATCACTCGTTCAAAGGCAGAGAATGACCGTCTTCGCGGGCTACTGGACGTCGCTTTCCAGTTTACGCCAGCACAACAGCCCATTCAGCTTATAGCCTCTGATGAGGAGGTTTCCCCTAAGCATCAGCAGCACTGTGAACAAGAGTGGAGCCCCAGTCTGGGCCAGGAGGACCCAGAGCCAACACAGTTTAAAGAGGAACGGGAGCTCAGGACCAGTCAGTTGGAAGATCAGTTTCAAGGGCTGGAATCGGATACAGAATCCATATTCACTCCTTCCTGTGTGAAAAGTGACTATAATCATGATTCGCCTCAGCCCTTAAATCTTTACCAAATTCAAACTGTGGAGGTTGGAGAGGGAaactctccgtctctccccgcCAACAAAACTGAAAAAATCAAACCAGAACCTGAAGGAGAGGGCTTTGAAATATCCGATCCAAGCAATCCACAATCCTTCTATGCCATGAATCTAGACAATGCTGAAGCTCAGAGTGAAAATGGTATATATTTCAATGAGATAGACAGTGATGGACTTCCCTCTGAGTTTGAGGTACCACAGCCAAATCAACCAAGGAGTGCCAGGAGAGGGCAAAGAATATGCACAGCGAAGACTGTGAAAAAGAACCCTGATGAGAAGCCGTACCAGTGCAACGTCTGTGGGAAAAGTTTTCATCACATGTCCAAACTTAGAACACATCTAAgggtacacacaggagagaggccaTTCAGCTGTCCAGAGTGTGGGAAATGTTTCAGTCAGTCTGGCGAAGTCAACAGACACCTTAAAACACACAATCGGCACAGGGCCTATTTATCCGGCCTATGAGGGAGATGCACCCTCTCTCGTGTCGAACtatgaataaaaaataataaagatTGCTGTTTTTTGTTTGAAAACAAGTGTTCTTGCTATTTATTTCTAGGGGTGGGAGATATTATGCCTACCATTCCACTCAGTTCAGCAGGACAGCATTTGTTTGTTTGTCCTGTGGCAGTTGAAATAGCATTAGCCAAAATTGACCCCAATTGTTATACAGTCTTGTTTACCAATGTACACATGAAAAACATTCAGAAACATATTTGGACTGACTCACTCTTGGCACTCATTGGACCCTAAATGTAGGCCTAATCTCTGTTCATGTTGTGGTATGAATAGTGTTGCTTAAAACAGAAAATGTGACTATTGTACATGAATGTCTTTATTGCATATTTTGTGGTGTTTGAACATGTCTGTTTACCATTGGGGTGTTTCATAGCCATTAGTATTGCTTGACTTGGACTTGCTACGTCAATCTGACGGCCCTTCAGATCTTGGACCCTGGAGATCACAGGACAGGGCATGGTCGAAAAATGTCCTAAACATTCATTGCACTGCTAGCCAactattttaaaacatttttgatTTGGAATCAGGGAGATTATCACAGAGATTCTATAAAATCTATCGATTCTaaaggaatgctaatcttatcaaACTGTTTATTGCTCAATCACACAGACCATGTGTTATGTTGTTCTTGCATTGGTTTACACATGGACATGAACTGTATTTATATTACTTTAGCAACTTCGGGTGGTAGCCTCGACCGGGACTCAAACCCGATTCCagcgactgtcaagccaacacaTTAACCATTAAGCCAAGTGGGCCAAACCTCTTGAATAGGGTTtataggtgttgggttaaggtcactgCACTAACCCCTTCCTTCGGGAGAGCATGTCCCCACACTTCTATGTACTGAGTCCCTCACGTGGATACGCCTCTCCGATGGCCCCACAGACTTCCATCTTACTTTTGACACCAATGTAGCAAATTTGGGGGGTATCCCTGACCAGGACTTGGTCCAGCACGGGTCCAGCGACTGTAAAGCCAACACCTTAAacgttaaagggatacttcaagattttggcaatgatgccctttatctacttccccagacaaactcgtggataccatttttatgtctcagtagctaggtttccatccaatttgcaacagattttcatgcgaatataaaaaaaaaaaaatctgcataaaaacaatatgcataTTTTCCCagcagagatgtgtttccatcaaattgacttgttgcagataaaaggctgtgcatGATGACGAAGTGCCCATCAAAAAAACTATTgcggttaaataaaaaaatgc

Function

NR:

description
gastrula zinc finger protein XlCGF48.2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610443.2 True 2390 mRNA 0.42 2 71237011 71239592

Neighbor

gene id symbol gene type direction distance location
LOC110528399 LOC106583473 coding downstream 1167 71210241 ~ 71235844 (-)
LOC110528398 LOC106583475 coding downstream 29981 71198628 ~ 71207030 (-)
LOC110528397 NA coding downstream 38947 71196371 ~ 71198064 (-)
LOC110528396 LOC106583476 coding downstream 69968 71150302 ~ 71167043 (-)
LOC110529014 lamb3 coding downstream 95322 71122628 ~ 71141689 (-)
LOC110528404 LOC106583471 coding upstream 34754 71274346 ~ 71278978 (-)
LOC110528410 LOC106583465 coding upstream 127558 71367150 ~ 71379759 (-)
LOC110528411 LOC106583463 coding upstream 143969 71383561 ~ 71392197 (-)
LOC110528413 LOC105016853 coding upstream 159030 71398622 ~ 71402695 (-)
LOC110528412 LOC106583462 coding upstream 163380 71402972 ~ 71412268 (-)
G643499 NA non-coding downstream 27656 71209056 ~ 71209355 (-)
G643546 NA non-coding downstream 28827 71207903 ~ 71208184 (-)
G643494 NA non-coding downstream 41598 71193175 ~ 71195413 (-)
G643542 NA non-coding downstream 44040 71192704 ~ 71192971 (-)
G643557 NA non-coding upstream 697 71240289 ~ 71240732 (-)
G643559 LOC100136012 non-coding upstream 2440 71242032 ~ 71242267 (-)
G643582 NA non-coding upstream 49975 71289567 ~ 71292139 (-)
LOC110528382 LOC106583486 other downstream 355586 70877584 ~ 70881519 (-)
G643159 NA other downstream 828893 70407033 ~ 70408118 (-)
G643054 NA other downstream 978129 70255345 ~ 70258882 (-)
G642089 NA other downstream 1175756 70057997 ~ 70061255 (-)
G643823 NA other upstream 517327 71756919 ~ 71758810 (-)
G644738 LOC106583443 other upstream 804629 72044221 ~ 72073477 (-)
G645145 NA other upstream 1461117 72700709 ~ 72703722 (-)
G645156 NA other upstream 1478154 72717746 ~ 72718449 (-)

Expression


Co-expression Network