Item | Value |
---|---|
gene id | LOC110529019 |
gene name | LOC106565155 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048571.1 |
NCBI id | CM023225.2 |
chromosome length | 90918291 |
location | 71794234 ~ 71824936 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
transketolase-like isoform X1 |
id | description |
---|---|
K00615 | E2.2.1.1, tktA, tktB; transketolase |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036984000.1 | False | 3523 | mRNA | 0.51 | 14 | 71794234 | 71824936 |
XM_036984001.1 | False | 3517 | mRNA | 0.51 | 14 | 71794234 | 71824936 |
XM_036983999.1 | False | 3531 | mRNA | 0.51 | 14 | 71794235 | 71824936 |
XM_036984002.1 | False | 3509 | mRNA | 0.51 | 14 | 71794236 | 71824936 |
XM_036984003.1 | True | 3494 | mRNA | 0.51 | 14 | 71794236 | 71824936 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110527145 | rho | coding | upstream | 149230 | 71637341 ~ 71645004 (+) |
LOC118965390 | NA | coding | upstream | 278364 | 71513120 ~ 71515870 (+) |
LOC110528422 | NA | coding | upstream | 281399 | 71508965 ~ 71512835 (+) |
LOC110528420 | tmcc1 | coding | upstream | 299378 | 71470967 ~ 71494856 (+) |
LOC118965316 | LOC106583456 | coding | upstream | 327895 | 71462666 ~ 71466339 (+) |
LOC110528429 | LOC106583446 | coding | downstream | 59090 | 71884026 ~ 71912479 (+) |
LOC110528430 | LOC106565157 | coding | downstream | 88964 | 71913900 ~ 71918751 (+) |
LOC110528432 | LOC106583444 | coding | downstream | 112389 | 71937325 ~ 71993564 (+) |
LOC110528434 | NA | coding | downstream | 178294 | 72003230 ~ 72030527 (+) |
LOC110528433 | LOC106583443 | coding | downstream | 212871 | 72037807 ~ 72073482 (+) |
G642992 | NA | non-coding | upstream | 1106 | 71792906 ~ 71793128 (+) |
G642991 | NA | non-coding | upstream | 6657 | 71787303 ~ 71787577 (+) |
G642941 | NA | non-coding | upstream | 76345 | 71717292 ~ 71717889 (+) |
G642940 | NA | non-coding | upstream | 76622 | 71715449 ~ 71717612 (+) |
G642832 | NA | non-coding | upstream | 256229 | 71537387 ~ 71538005 (+) |
G643868 | NA | non-coding | downstream | 17899 | 71842835 ~ 71843074 (+) |
G643878 | NA | non-coding | downstream | 26745 | 71851681 ~ 71853556 (+) |
G643883 | NA | non-coding | downstream | 34394 | 71859330 ~ 71859548 (+) |
G643888 | NA | non-coding | downstream | 37237 | 71862173 ~ 71862415 (+) |
G643891 | NA | non-coding | downstream | 40434 | 71865370 ~ 71865867 (+) |
LOC110528419 | NA | other | upstream | 340444 | 71452369 ~ 71454640 (+) |
LOC110528409 | NA | other | upstream | 450205 | 71338839 ~ 71344029 (+) |
G642664 | NA | other | upstream | 615710 | 71177328 ~ 71178524 (+) |
LOC110528378 | LOC106583488 | other | upstream | 969523 | 70809354 ~ 70824711 (+) |
LOC110528375 | LOC106583493 | other | upstream | 1011453 | 70734084 ~ 70786210 (+) |
G643963 | NA | other | downstream | 171117 | 71996053 ~ 72002785 (+) |
G644178 | LOC106600668 | other | downstream | 522801 | 72347737 ~ 72359564 (+) |
LOC110528440 | LOC106583437 | other | downstream | 671409 | 72496317 ~ 72502995 (+) |
rhobtb3 | LOC106583418 | other | downstream | 1091169 | 72915910 ~ 72949393 (+) |
cast | LOC100136283 | other | downstream | 1233222 | 73058158 ~ 73160432 (+) |