LOC110528426 (LOC106583363)


Basic Information

Item Value
gene id LOC110528426
gene name LOC106583363
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 71830168 ~ 71839230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610477.2
TGACGCGGAAGtacttttttatttgatttcGCTGACCAGACGCTGATAATGCTTGCTACCATTAGACACCTTGTTAGCAGCAAAACACATATCTTCATAGTAAAACAAAGTGTACTTAGATTTCCATCAAAATGTCGAAAATTCAGCTTTTGCAGGTTTTTCTAAACGAGCGCTTAACAGCAGCGGCAGTTGAGATATTAGGGGCTGTGGAAAATACCATAGCAGAGTACCAGGAAGAAATCTCCCGTTCGAAGGAGGAGATCGAACGTCTACAAAGGCTGCTGGATTTGACTTTCAATCCCGACataaagttacatattgcagACTCCCAGCAGCTCACTCTCCCTGTCCCTGAAGACATTCCTCCTGAGCAGCAGGACTGGAGCCCCAGTCTGGGCCAGGAGGGCCCAGAGCCCACTcagattaaagaggaacaggaggagtttgggaccagtcaggaggaagagcagcttgAAGGGCTGGAGTCTGATATCAAAGAGTTCATATTCACTCTACCCTGTGTAAAAAGTGACTATGATCCGGACCCTCCTCAGCCCTTATATCTTCCCCAAACCCAGACtatggagaacagagagagggactctCTTCCCACCAAAACAACTGAACAAGACATCAAAACAGAACCTAATGGAGAGGGCCGCAGTGCATCAGAACCAACAAGTGAATCTCAACCCCTCTCTACAGTACACTCAGACTGCTCTGCAACTCAGATTCTGAACAGTGAAAGTGACAATGGGGTGGACTCTGGAGGATTAATGTCAGGGTTACAGCCACTCAAATCAAAGACAACTTGGACGAAGAAAGAACAAAGCTCTAAGATCAGGGAAGCCAGTGAGTTGAAAGTTCCATTGAGGGCGGCTCATTCAGGGGAGAGACCACACAAATGTCCTGTCTGCAGGAAATGCTTTCTGAAAAGTAGCATTTTAAAAGCACATCAGAGAATTCATACTGGGGAGAAACCATATTTCTGTAATGTATGTGGCAGAAGTTTCAGTCAGAAGGGAACCCTAACGGAACATATGAGAATTCACACTGGGGAGAAACCATATCAGTGCAAAGATTGTGGAAAATGCTTCAGCCGAATGAGAAACTTGGCAGGACATATGAggatacacactggagagaaaccataTAAGTGCAGTGATTGTGGCAAGTGCTTTAGTCAGAAGATATGCCTGAAAGATCATATGATGACTCACACAGGGGAGAGATCATATATTTCCCCGCTtttgccatcaaacccctgcaaaaTATCCAGATCGCCGCAACacgcctggtgttcaaccttcccaagctctcccatgtcaccccgctcctccgcacactctactggcttccagtcgaagctcacaTCATCTTTGAGACCCTGGTGCTTGCCTACGGAGCAGGAAGAGGACCTGCCCCTCCCTAACTTCAGGCTATGGTCAAACTCTACACCCCAACCcaagcactccgttctgccacctctggtctcttggccctcccacccctacaggagggcagctcccgctcagcccagtcaaagctcttctctgtcctggcaccccaatggtggaacaagTTCAGTACAGCGGAGTCCCTGCCCGAAAACGTCTGACACACTACttaaataaccccccccccccccccccccgccgccCCTAAGAGTATAGGTTTAATCACCATGAGCAatgtcaagcgtcggctggagtggtgtaaagctcgctgccattgggccctggagcagtggaaacgagttATCTGtaatgatgaatcacacttcaccatctggcagtccaacggacgaatctgggtttggcagatgccaggagaactttACCTGCCCAAATACCTAATGcaaactataaagtttggtgaaggaagaataatggtctggggctgtttttcatggttcaggcaaGGCCTCAACtgtacagtatacaatgacattctagacgattctgtgcttataactttgtggcaacagtttggggaaggcccattcctttttcagcttgacaatgccccgtgcacaaagcaaggtcaataaagaaatggtttgtcgagatcgttgtggaagaacttgactgtcctgcatgcacagagccctgaccttctATCCATGTTGTGAAAATATTGAGAAATTGAGGTTGTCCCTTGATGTTCAATtccttttagatttttttaaaaatgtacataTCAAATGTTATTCTTGCTGTTATTTACATATCAAATGTTGATACTTTTTGATGTAATAAAAATGTACTTCCATGTGTATAAAAGGGGCTGAAGTCTTTCAGAATAATTAATG

Function

NR:

description
zinc finger and SCAN domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610477.2 True 2311 mRNA 0.46 2 71830168 71839230
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Neighbor

gene id symbol gene type direction distance location
LOC118965362 NA coding downstream 39015 71788526 ~ 71791153 (-)
LOC100135991 cacna1d coding downstream 55823 71647403 ~ 71774345 (-)
LOC110529018 LOC106583452 coding downstream 217780 71536345 ~ 71612388 (-)
LOC110528421 LOC106583382 coding downstream 331597 71496172 ~ 71498571 (-)
LOC110528414 LOC106583457 coding downstream 377482 71440153 ~ 71452686 (-)
LOC110528428 LOC106583447 coding upstream 12520 71851750 ~ 71869526 (-)
LOC110528427 LOC106583448 coding upstream 30382 71869612 ~ 71872601 (-)
LOC110528431 LOC106583445 coding upstream 83046 71922276 ~ 71934520 (-)
LOC110528436 LOC106583361 coding upstream 282286 72121516 ~ 72220744 (-)
LOC110528438 LOC106583441 coding upstream 396828 72236058 ~ 72408131 (-)
G643854 NA non-coding downstream 459 71829483 ~ 71829709 (-)
G643762 NA non-coding downstream 212531 71617412 ~ 71617637 (-)
G643758 NA non-coding downstream 217139 71612792 ~ 71613029 (-)
G643745 NA non-coding downstream 243669 71585941 ~ 71586499 (-)
G643713 NA non-coding downstream 300534 71529396 ~ 71529634 (-)
G643869 NA non-coding upstream 3414 71842644 ~ 71842891 (-)
G643924 NA non-coding upstream 25971 71865201 ~ 71865817 (-)
G643953 yo84 non-coding upstream 79609 71918839 ~ 71920853 (-)
G643823 NA other downstream 71358 71756919 ~ 71758810 (-)
LOC110528404 LOC106583471 other downstream 551388 71274346 ~ 71278978 (-)
LOC110528398 LOC106583475 other downstream 623361 71198628 ~ 71207030 (-)
LOC110528382 LOC106583486 other downstream 948743 70877584 ~ 70881519 (-)
G643159 NA other downstream 1422050 70407033 ~ 70408118 (-)
G644738 LOC106583443 other upstream 204991 72044221 ~ 72073477 (-)
G645145 NA other upstream 861479 72700709 ~ 72703722 (-)
G645156 NA other upstream 878516 72717746 ~ 72718449 (-)
gnrh2 gon2 other upstream 1368730 73207930 ~ 73210424 (-)
G645928 NA other upstream 1855343 73694573 ~ 73694925 (-)

Expression

LOC110528426(LOC106583363) Expression in all Baseline Samples

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LOC110528426(LOC106583363) Expression in each Bioproject

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LOC110528426(LOC106583363) Expression in each Sample
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Co-expression Network