LOC110528427 (LOC106583448)


Basic Information

Item Value
gene id LOC110528427
gene name LOC106583448
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 71869612 ~ 71872601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610480.2
AACTGACGTCGTTGTTAGTGTCGCTAGCATAATAGTAGTGATGCAGGAGCTGAACAAATATAAATGATAAAAGGCTACAGATGAAAGGGGAAAGTATCTTCAATCTTGAACCAAGGGGAAATGGTTGTTGCTTGCTAGCGTTCACAAGCACCGCGTTAGCTACAAAATAGCCTAAACGTTTCCTTGAAAATGTCTAAAATGCAGCTGTTGCAGGATTATCTAAACGAGCGGTTAACAGCGGTGGCTGTTGAGATATTTGGGGCTGTGGAAAATACCATAGCAGAGTACCAGGAAGAAATCTCCCGTTCGAAGGAGGAGATTGAACGTTTACGGAAGCTGCTGGATTTGGTTTTCCAACCCGACATAAAGCTACAGAAAGCAGACCCCCCGCAGCTCACGCTCCTTGTCCCTGAAGAGGAGGTTCTTGCTGAGAAGCAGCACTGTGAGCAGGAGTGGGGCCCCAGTCTGGACCAGGAGGACCCAGAGCCCACTcagattaaagaggaacaggaggattTTGGGACCagtcaggaggaagagcagcttcagGGGCTGGAGTCTGATATCAAAGAGGTCATATTCTCTCCTCTATTTTCTCCCCAGCCCTCACATCATCCCCAAACCCAAACTGTggagcacagagagagggacgcTCTACCCACCAAAACAACTGAAGAGATCAAAACGGAACCGGATGGAGAGGGCTATGGAAGATCTGAAGCAAACAATGAATTACAGCCCCTCTCTCCAGTAAATTCCGACTGTTCTGCAGCTCATATCGGGAACAGTGAAAGGGACAGTATAGGGCTAATGTCAGGGTTACAGCCACTCAAATCAAAGACAACATGGACAAATAAAGTACAAAGCTCTATTAAGACCAGGGAAGCCAGTGAGTTGAAAGTTCCATTGAGGGCGGCTCACTCAGGGGAGAGACCACACAGGTGTCCCGTCTGCAGGAAATGCTTTCTGAAAATTAGCATTTTAAAAACTCATCAGAGAATTCACACTGGGGAGAAACCATATTGCTGCAATGTATGTGGCAAATGCTTCAGCCGGATGGGACACCTGACTGAGCATATGAGAACTCACACGGGGGAGAAACCATATCAGTGCAAAGAATGTAGCAAATGCTTCAGCCGGATGAGAAACCTGACCGTTCATATGAGGACTCACACAGATGAGAGACCATATAAGTGCCCCATGTGTGTAGAATGCTTCAGATCAGCAAGTCATCTAAAATGGCACCAGCGAAGacatcacacaggagagaaaccacgTTGCTGACTTTGTGGTAAATGCTTCACTTGTAAGAACTGAGGAGGAGAATGAACCCAGAGGGATAAACATGACAGTGCTGCTGGGGCAAAATGGTACTCTCCCTTGTAGGAGGACCTTTCCATTGTAAAACACTGATGTTTCATAACCCTTCTGGGCATGGcacaaatgtatatactgtaataaGTTTTTCAGAACCTAGTAGTTATTTGGCAATTCTAGCATTATTTGCACGCAAAATCACAATTTATATGTCTCACAGAATGGACAAACAAAATGTAAATTCAACTtttgatgtgtgtgtctctagTACCCCTTGGGGGGAGTGTTTACCCCCTAAAAGTCAACTTGTAAATATTGACATGTTGGGCAAATAAGAAGTGTTCTGGATGTTACACACCCTCTGTTCTGGATGTTACACACCCTCTGTTCTGGATGTTACAGGAAATTGAACATATTAGCAAAAGTCTGAGTGAGGTCAAAACATGGATTGCCATTTCGATCAcaaaaaagtataattttcaaAAGAATGTAACAACGTATGGATGTTACAGAATCTGAAAGTTTTATTGATCaaaatcaaaaaaatatatattttttgaaagtTTTTCAAATGTCTGCAGAAGGCATAGTATCTCAGGATTACATAAATGCAGTTAGCCTAAATACCACACCCTAATAGGTTATGTTTTGTctttaaatacactatatatacaaaagtatgtggacacccttttaAATTAGTGGATTGGGCTATGTCAACCACACCTGTTGCTGGTGTAAAAAAagagatgttattgcaggtgtagtgaaatgcttgtgttcgtagctccaacagtgcagtgatatctaacaattcaTACAAATCTAAAAATGAAacaaatggaattaagaaatattaggacgagcaatgtcggagtccggAGTATACATATACACtgaatctacaaaacattaagaacacttgctctttccatgactgacTAAtctggtgaatccaggtgaaagctatgatccattaa
>TU731852
GAAACCTGACCGTTCATATGAGGACTCACACAGATGAGAGACCATATAAGTGCCCCATGTGTGTAGAATGCTTCAGATCAGCAAGTCATCTAAAATGGCACCAGCGAAGacatcacacaggagagaaaccacgTTGCTGACTTTGTGGTAAATGCTTCACTTGTAAGAACTGAGGAGGAGAATGAACCCAGAGGGATAAACATGACAGTGCTGCTGGGGCAAAATGGTACTCTCCCTTGTAGGAGGACCTTTCCATTGTAAAACACTGATGTTTCATAACCCTTCTGGGCATGGcacaaatgtatatactgtaataaGTTTTTCAGAACCTAGTAGTTATTTGGCAATTCTAGCATTATTTGCACGCAAAATCACAATTTATATGTCTCACAGAATG

Function

NR:

description
zinc finger protein 572-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610480.2 False 2297 mRNA 0.42 2 71869612 71872601
TU731852 True 397 lncRNA 0.42 1 71870368 71870764

Neighbor

gene id symbol gene type direction distance location
LOC110528428 LOC106583447 coding downstream 86 71851750 ~ 71869526 (-)
LOC110528426 LOC106583363 coding downstream 30382 71830168 ~ 71839230 (-)
LOC118965362 NA coding downstream 78459 71788526 ~ 71791153 (-)
LOC100135991 cacna1d coding downstream 95267 71647403 ~ 71774345 (-)
LOC110529018 LOC106583452 coding downstream 257224 71536345 ~ 71612388 (-)
LOC110528431 LOC106583445 coding upstream 49675 71922276 ~ 71934520 (-)
LOC110528436 LOC106583361 coding upstream 248915 72121516 ~ 72220744 (-)
LOC110528438 LOC106583441 coding upstream 363457 72236058 ~ 72408131 (-)
LOC110528439 LOC106583439 coding upstream 538758 72411359 ~ 72430465 (-)
LOC110528442 NA coding upstream 651236 72523837 ~ 72529052 (-)
G643924 NA non-coding downstream 3795 71865201 ~ 71865817 (-)
G643869 NA non-coding downstream 26721 71842644 ~ 71842891 (-)
G643854 NA non-coding downstream 39903 71829483 ~ 71829709 (-)
G643762 NA non-coding downstream 251975 71617412 ~ 71617637 (-)
G643953 yo84 non-coding upstream 46238 71918839 ~ 71920853 (-)
G644739 LOC106583443 non-coding upstream 165189 72037790 ~ 72039966 (-)
G644738 LOC106583443 non-coding upstream 174075 72044221 ~ 72073477 (-)
G644797 NA non-coding upstream 267736 72140337 ~ 72196853 (-)
G644873 NA non-coding upstream 399780 72272381 ~ 72272617 (-)
G643823 NA other downstream 110802 71756919 ~ 71758810 (-)
LOC110528404 LOC106583471 other downstream 590832 71274346 ~ 71278978 (-)
LOC110528398 LOC106583475 other downstream 662805 71198628 ~ 71207030 (-)
LOC110528382 LOC106583486 other downstream 988187 70877584 ~ 70881519 (-)
G643159 NA other downstream 1461494 70407033 ~ 70408118 (-)
G645145 NA other upstream 828108 72700709 ~ 72703722 (-)
G645156 NA other upstream 845145 72717746 ~ 72718449 (-)
gnrh2 gon2 other upstream 1335359 73207930 ~ 73210424 (-)
G645928 NA other upstream 1821972 73694573 ~ 73694925 (-)

Expression


Co-expression Network