LOC110528454 (ubap1)


Basic Information

Item Value
gene id LOC110528454
gene name ubap1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 72836699 ~ 72866724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610527.2
TTCAAACAGGAACCATAGGAAGGAAGGCGAATAAATCAAGATGGCGTTCCACTATGAAGCATGAAAGAGATTTCGATTCcaataacatttattttaacaAAGTTTGAAGAAGGTGTCTTTGCTTTTAGGTGTACGTACGTTTTTGGAGAAGCAAGACGGAGCAGATAATACGGACTCTAAATGGCTGCGAGGAAGTCTGATACCCACAACAATGGACCCATCAGCTACCTTGATGACGTTCCATTTAAAATCAACGATAAGTTCCGCTGCCCTGCCAAAGTGGGTCTTCCTGTTGGCTTCTGCCTGCCcgactgtctctctgtgcttgCAGACCTGCAGTATGACTTCTCCCTGGAGAGGCGGAGTGTGCGCTGGGGGGCGGAGCTGGCCGAGGCCAGGGCGGCGGAGGCCCGAGCTGCAGAGGTGGCCAGGGTTGAGTTGGAGAGCAGGGAGCACTCACCCCCCGCACAAGACCCTGACGGGGGATTGGCCGGCGGGGGCAAGAGGCCTCGCCCCGCCGAGGAGCAGGATGCTCTCCCGCCTGCATTGAATCCGCTGATGGCCGCACTGCGCCACAACGCCATCCTCACCCCGCTGCCCGCGCCCGCCAGGCAGACCGCTCCCAGCATCCCGGAGCCCCAGTACCTTAACCTGGCTGACTTTGAGCGCGAGGAGGACCCCTTCGACAAGCTGGAGCTGAAAACGCTGGACGATAGGGAGGAGCTGCGCAACATCCTCCAGAGCCAGCCACAGCCCCAGCAGCAGTCTGTATCCCCACCTGGGGAACCCCAGCCCGAGCTGGCATCGCGAGGCAGCACGCCTCCACCCCAACTCCTCACCACCAGCCTTCCGGCAAAAACTGCCTTTTCCCTCAACGGGCTGGTGGCGCAACTGGACATGGACAGAGCTGGGAGTCTGGCCCAGGGACGGACAATGGACCCAGACCGGCCCTGCAACATCCGCTCGCTGACCTTCCCCAAGCTGTCGGACCAAGGGGACTTGTTATTTGACTCCTACTCTCCAGCCCCTGTACCACCTAGCCTATCCACCGGCAGCCCACCGGCACACCAGCAAAAGACAGAGGAGCCACCCAGGCACACCCAAAATGGGGCACCAAAGCAGATAAATGCAGGTCCTCTCCCGTGCGGCGCGGCACTGCTCAACCTGTCTTCCAGTGGGCGGCAATGTGTGGAGACCATCGTGTCCATGGGGTACTCCTACGAGGGGGTCCTGCGGGCCATGCAGAGGCGAGGCCAGAATGTGGAGCAGGTGCTGGAGTACCTGTTTACTCATACGCGTCTTTGTGAGCGGGGATTTGAGTCCAGTGCCGTAGAGGAGGGCTTAGAGATGTACCAGTGCTCTGAAGAGAAGGCCTTAGAGTTCCTGTCGCTGATGACGCGGTTCGGCGAGATGGGCTTTGAAAGGGACACCATCAAGGAGGTGCTACTGGTGCACAACAACGACCAGGAAAAGGCTCTGGAGGACCTCATGTCCCGTGCCGCAGCCAGCTGAGCCCCCCCTTCAACCATCCACCCACATGCTCCTTGCTGGCTTcctcccaccccacacacacatacacacacacgcacaacccCCATGTTTCAACAGTGTTGCAGCACAGAGGGGTGAACTCCGACCCAACGCAGCTCATGACTTCCGCTCATGATCCCACTCTGTTCCACTCTCACACAGTGACTCTAAGCGAGCAAACACGTACACTTCCATAGTCTATTATTCTGTTCTTAGAGTGTGGGGGGGTAAATGGAAGAATATGAGGAGCACCTGCGAGTTGAGGTGGTTGGTTTGTGCTGACCACACCAGGGAAActtgcctgttttttttttcttttacatTTCCTAGCATGTCAATCGACGTGTGTGCACCGTGATGGTTGGAAAGGAGGCATGAACTTCCCAAAGGAGCATAGAGGAGGAGACCCAATGCTGCACAGCACTTTGGTGAGTGTGTCTGACTCTGTGGATGGGGACAATGGGCCCCGAACTAGGAGGAACCACTAGCCAGGCTCTACTTTCTACAGATGCACAGTTAACACTCCCAGCTAACTAAGCTGCCATCTTCCGCTGCCCAACATAGGCCTACAAAATGGTAGAGTGGAGGGGACGCCAAGTGGCCCATGTGTGACTAACTGACCGACTGACGCCAGAACCTAAAAACACAACTGGCATCGTCGCAGAACAGAGAACTGAGTTCAAGTGCCCCCTCTGTTCCCGCGACTGGCGTTCACCGATCTTCCTCATCTTTTCTCTGCTGTCGTTTTGCTTGTTAATTTGTCCATTTGTTCAAAAGGACACACATTGTTATTGTTTCCCGAGTCCTTGTATAGAGATTCTTTCTTTGCTTTCTGTTTTAGGAACTGCATTAACAAACCTTAAAAGTAATAATAACATAACTGATACTACTGCCCGTTGGCTCGTCCTGCACTGGAACGGACTGCAAGACCAGTGGAGAAGAGGTGGTCAAATTATTTTGcaggaaacatgtacaaacaCTCACTGGCACAGAGAAGTGTGACAaactgtacagacacacacacaccttgccaaCATATATATTGACTTATTTAAAATGACACTGACATTTAGTAATAAAGAGATGAAATATGATTTAAAATGAGAACCTTGTATGAGAAGCAAGCACTAGGATGCAAGTGGTGCTTTGAAATGGTCCCTTTTGGTTTTGATTCAGACTGGACAGAGAGCTGGGAAAAAATTATTGTTTTTGCAACCTAAACTTTTGTGCAATATGTTTTATGATGTGTGACTGACTGGCATATTTTTGGGACCCAGTAAACCTTGGGTCTAAGCAGTGAGTAACTCCCAAAATGACAGATTGCCTTTGCTGGAGACACACTCACTGGAGGAGGAAatctgtaaaaaaaacatttgatttaattgtCTGCTGTCATTTACTCCCCTCATTACTGAAGATCAGGCTCTGCTATCAACTACGATTGTGATCTTTGTAACACACATTCATGCTGATCTGAAAGTGTTTTTGCTTCTTTGCctggtgtcatgcataggaatcGGACTGGCAAATATTCCAAGAACGGGTCAGAAGATCAAACAGCTTGTCAGTTAAATGATTAACCAAATTCATTAGGgtgatttatttgattttataATTGTATTTCATATAGCTATGTTTTCACCTTGCATCAACTCTTTTTTTATTGACCTGTGTGTATGAGTCTACAGGTAGTTTTTGAAGTGCCATGATGCTCTCCATTTCATGTGTGAATCTTGTGTGCAGAAAGCTGCTTTCCTCTCCCAACCAAGCAGCCAGTCGATTCAAGCTTCATGATTAATTTCCTAGTGTAATGACCAATGTCTTTAGAATACAACAGTCTTGATCTCTCTGGTAATCAAGAGGATCTCGTGACAAATTACAACATTAACATTTCATTTTAAGATTCAGAGCTGAGAAGTTGAATGCACTACATGGGAATGTGACTGAAAATTGGCACTTACCTCTGAGGTTGTACCTAGTTTTACCAGAAGACATGTACAAATCAATTGTTGCAGATTTACATTATCACATAGGCCTACTATTGTAAGAAGGATCTGTTATTGAGAGCATACGGTCTGTGGAGTTTGGTCTTTGTATTGATAATATGTTGGTAAtacgtgtgtgtgcgtctgcatCTGAGAGTGGTAGAGGAGAGCAGACCAAAGGGGCTTTCTGGTATTATAAGAAACGTGTTCAGAGCGCTTTGTACACAAATGTGAACCGGTCTAGAACTTCCCCTACATAGCTGTCTTAACGTCTAAGAGATTAAAACACCCCAGATTCCATTCAGAATTATTAGACTTATATAGTGTAGTGTCTAAACGCAAGACCACCTCCAGATCTTGCTCTGAACTAAAGTAAACATTTTTCCTCCTGATAACTGGTCAATTTCCTTTCAACATGACTGGcttcttttgggggggggcacacaagaTGCCAAGCCACATGGAACATGGTGATggttgaggggaaaaaaatattgctGGCCTGCTTTCTGTATTGTGGACATTATTGGGTCTAATCTTAACTTGAGATCTTGGTTTTGTAGTAAGCCTCGGAGTCAGTGAGAGACTTGAAGTGTGGGTCTGATATGACATCTGGATTTTGATGTCTTAAATTATAAAAATAAGGAGTTGTGTTCCTGGTAGCCCCTgaaatgtgatttaaaaaatgtCAGTTTACTCCTGAATCATTTGGCAATTCTTCAATGTGATTAAATGTACACATCTTTTCAATGGTGTGGCTGTTACTATTTA

Function

symbol description
ubap1 Predicted to enable ubiquitin binding activity. Acts upstream of or within axon extension. Predicted to be located in cytosol and endosome. Predicted to be part of ESCRT I complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human UBAP1 (ubiquitin associated protein 1).

NR:

description
ubiquitin-associated protein 1-like

GO: NA

KEGG:

id description
K24629 UBAP1; ubiquitin-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610527.2 True 4286 mRNA 0.48 7 72836699 72866724

Neighbor

gene id symbol gene type direction distance location
LOC110528453 dcaf12 coding downstream 15037 72806892 ~ 72821662 (-)
LOC110528452 ubap2 coding downstream 30035 72778129 ~ 72806664 (-)
mlnl NA coding downstream 98222 72734780 ~ 72738477 (-)
LOC110528447 LOC106583432 coding downstream 235693 72588016 ~ 72601006 (-)
LOC110528445 LOC106583431 coding downstream 263200 72555403 ~ 72573499 (-)
LOC110529025 NA coding upstream 21670 72888394 ~ 72889599 (-)
nudt2 nudt2 coding upstream 28251 72894975 ~ 72899427 (-)
ell2 LOC106583416 coding upstream 98823 72965547 ~ 73000710 (-)
pcsk1 LOC106583415 coding upstream 154208 73020932 ~ 73044827 (-)
LOC110528460 NA coding upstream 296305 73163029 ~ 73164232 (-)
G645185 NA non-coding downstream 65938 72769585 ~ 72770761 (-)
G645134 NA non-coding downstream 148534 72687794 ~ 72688165 (-)
G645132 NA non-coding downstream 150097 72686379 ~ 72686602 (-)
G645131 NA non-coding downstream 150601 72685855 ~ 72686098 (-)
G645129 NA non-coding downstream 153280 72683108 ~ 72683419 (-)
G645264 NA non-coding upstream 58328 72925052 ~ 72925492 (-)
G645268 NA non-coding upstream 65705 72932429 ~ 72932639 (-)
G645271 NA non-coding upstream 67592 72934316 ~ 72934652 (-)
G645334 NA non-coding upstream 211337 73078061 ~ 73078440 (-)
G645375 NA non-coding upstream 249336 73116060 ~ 73118179 (-)
G645156 NA other downstream 118250 72717746 ~ 72718449 (-)
G645145 NA other downstream 132977 72700709 ~ 72703722 (-)
G644738 LOC106583443 other downstream 770576 72044221 ~ 72073477 (-)
G643823 NA other downstream 1077889 71756919 ~ 71758810 (-)
LOC110528404 LOC106583471 other downstream 1557919 71274346 ~ 71278978 (-)
gnrh2 gon2 other upstream 341236 73207930 ~ 73210424 (-)
G645928 NA other upstream 827849 73694573 ~ 73694925 (-)
G646073 NA other upstream 944178 73810902 ~ 73811457 (-)
LOC110528488 NA other upstream 2240173 75106897 ~ 75107924 (-)
G649025 NA other upstream 2752601 75619325 ~ 75623983 (-)

Expression


Co-expression Network