zmat1 (LOC106583414)


Basic Information

Item Value
gene id zmat1
gene name LOC106583414
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 73197136 ~ 73206996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610544.2
CAGATAGGAAGAAAGATGGAGAAGGGAAGTATCTGTGCTCCGCTGCTAGCGGAGTCAGATACTGAAAATAACATTATTTCTACTCATAACGTGGCTTCTGTATCAGATGCTGACACAGTAATAAACACTAATAATACCAATAGTTCACAGATTGAAGCAGACTTGGGAGAAAGTGACCTGAAGGGTCTCTTCACGGACAGCCACTGCCATGTGTGTGAGGCTTCTCTGCTGTTCGAGTCCCAGAGGATCGCACACTACgagGGAAAGAAGCATGCTCAGAAAGTGAGACTCTACGTGCAGACCAAGAAAGATGAGAAACGAAGTAAAGACTTCCAGAGAGGAATCACTATGGACAAGGACCGCTTCTGTGAGCTGTGCAGCATGGTATTCAGTTCTCCGGTGGTGGCCCGCTCCCACTACGACGGCAAGGTCCATGCCAAGAACCTGAGAAAACAGGCCCTCTATCCCACCACCCAGCCAGCAGACACTCTCCCTCAAAGGGGCCTCGGGTTGGCCAAAGCAGGCCCACTCCAGGCCTCTGGCATTGACCAGGGAATGGTCGAGGAGGGGGGGAAgggaccccagaacacctcagaGACTGTGGACCTGAGTGACCCTAACAAGCACTGCCGCCTGTGTGCCGCCTCCTTCAACAACCCCCACATGGCCCAGCAGCACTACGCCGGCCGCAAGCACCAGAGGAACCACTCCCGCCAGCAGCTGCTCAAAGACCTGGGAGAGGACCCTGCACAAGCCAACTCCTTCACATGTCCGGTGTGTAACATTAAGCTTGACTCTGTGGAGATGTACCACGCTCACATGCAAGGAAACAAGCACCAGATCAAAGAGAAGAAGGTTGTTGACCTATGCAAGTCTCAGAAGAAGGTGTATGATTCGTTCGCAGATGAATTGGCCGACTACATCCACGTGCAGAAGGCCCGTGGTATAGCCCCAAAAACCAGCTTCGGGGCTAccggggaagaggaggaagaagagggagaaggagaagcgAACCTCAGCAAGGTTGACGGCCAAAATAAAACCACCTTGGGCCTTCCTCCTTCTTCccgccctcctcttcctctcacctctcttcctCTGCATCCTGCTGCTGCCTTTTATCCTCCTCCACTTTGGTGCCCGCCCTATCAGGCTCCTCCCACTCACTTTGGGTTCAAGGGAGTCACCTATGAGCAAACGGCCTGGGGCCACACTTTCCCTCAGCCCTTCCCTCCAGGATCTGCTCCGGCAGGCTTTATTGGCTGGCCTAAAGCCAGGGGGAGGGACAATGAATGTTCaagctcctcctcttcctacacaagctcctcctcttcctacaGCAGCAGCAGTGACAGCAGTGACAGCAGTGACAGTGACtacaggcacagagagaggaagaggaggaaaaggaagatgaggaaggagagagggaggagggcgagggaggaggactcagaggagaggaagaggaggaggagagggaagagtctAAGAGATGATGACAcagaagggagaagaggaagagagcatGACGAAGAAGCGGAGGAAGAGAGTAAGAGGAAGAGAAAAAGACTGCACTATAGTAGCAGGAGTCACAGGGAGGGACACAGGGCAAAGAAACGCCGGGAAGAGGATGAAgaaaaagaaggaaggaaggaggagaaagaagagagtaCAGAGGAAAgggtgggaagaggagaggagaaggaggtgcATATTCAGGCTGAGATTCAGGAAGCGATAGAAGAGAGGGAGCAGGCCAAGGAGACCAAGGCCAAACACAGGAAAGACAAGAAGAAGACCAAGGAGAAAGTGGACACCAGGACAGAGGAGGAAAAGCTATGGGATGAGTCCATCATAGGCTTGTGATGCAGAGAACCTCCTGGAACCCACCATCTGAAGACTAAAGCCAGGAACATACTCAATGCAAATATGTCTAGTGACATGATAAAATGTATACAGTTGGTGAACATGAACAAAAGCAACCAAGTTCTACGTGCTTCCCGAACTTTGTTCccatgttcttgtttttttatgTTCACCAACTGTCAGCTCTTGATGATGTCACTAGACGTCTTAACGCGTTAAGTATGTTCCAAGTTTTACAGCTGTCAAGCCGGACATTGCAGACGTCAACAACGACAACAACATTGGCTTACGACGACTGACTTTACACAGTCATGACACAAGCAGTAGTGTAGTAATGCTAGCTGGCTAGCCATATGCTTAGTGTAAAATAAGAGTTTGTGTCATGAATGTAATATAGTTTATTCACATCAGCTGCCATGACTGTTTATTACGTCTGCTATAACGTGCTTCTGACAGCGAGATGATGGGTGTACAAGAAATATGTCATGTTGTCGGCAACCTCGACACGCAACTCTATTGCACATCCATTTTGAAGTAACAGCACACTTCACGGCGCAAAATAATATAATGTTGCAATgacattaaaggcccagtgcagtcaaaaatttgatttcctgtgttttatgtaAGGTtacaaagggagggtatattactagAAACTTTTTAAGTTTACCTTTTAAATACCATAGTTTTGGTACTGTATCTTTCAAGGGTTTTATGTAACCTGCCACAAAACATCTAGTGGCCCATTTTGgaacttcagattatcacaggtgtctgtagtcatctctggccctctgtgtggccttaacACATGTCAAATGTATGAAATAATTAAATACGATTTAAAAATAGACTGACAAACCATTAAAACATTATCCTACATATAAA
>XM_021610546.2
CGCCTGCGTTGTTCAGATAGGAAGAAAGATGGAGAAGGGAAGTATCTGTGCTCCGCTGCTAGCGGAGTCAGATACTGAAAATAACATTATTTCTACTCATAACGTGGCTTCTGTATCAGATGCTGACACAGTAATAAACACTAATAATACCAATAGTTCACAGATTGAAGACTTGGGAGAAAGTGACCTGAAGGGTCTCTTCACGGACAGCCACTGCCATGTGTGTGAGGCTTCTCTGCTGTTCGAGTCCCAGAGGATCGCACACTACgagGGAAAGAAGCATGCTCAGAAAGTGAGACTCTACGTGCAGACCAAGAAAGATGAGAAACGAAGTAAAGACTTCCAGAGAGGAATCACTATGGACAAGGACCGCTTCTGTGAGCTGTGCAGCATGGTATTCAGTTCTCCGGTGGTGGCCCGCTCCCACTACGACGGCAAGGTCCATGCCAAGAACCTGAGAAAACAGGCCCTCTATCCCACCACCCAGCCAGCAGACACTCTCCCTCAAAGGGGCCTCGGGTTGGCCAAAGCAGGCCCACTCCAGGCCTCTGGCATTGACCAGGGAATGGTCGAGGAGGGGGGGAAgggaccccagaacacctcagaGACTGTGGACCTGAGTGACCCTAACAAGCACTGCCGCCTGTGTGCCGCCTCCTTCAACAACCCCCACATGGCCCAGCAGCACTACGCCGGCCGCAAGCACCAGAGGAACCACTCCCGCCAGCAGCTGCTCAAAGACCTGGGAGAGGACCCTGCACAAGCCAACTCCTTCACATGTCCGGTGTGTAACATTAAGCTTGACTCTGTGGAGATGTACCACGCTCACATGCAAGGAAACAAGCACCAGATCAAAGAGAAGAAGGTTGTTGACCTATGCAAGTCTCAGAAGAAGGTGTATGATTCGTTCGCAGATGAATTGGCCGACTACATCCACGTGCAGAAGGCCCGTGGTATAGCCCCAAAAACCAGCTTCGGGGCTAccggggaagaggaggaagaagagggagaaggagaagcgAACCTCAGCAAGGTTGACGGCCAAAATAAAACCACCTTGGGCCTTCCTCCTTCTTCccgccctcctcttcctctcacctctcttcctCTGCATCCTGCTGCTGCCTTTTATCCTCCTCCACTTTGGTGCCCGCCCTATCAGGCTCCTCCCACTCACTTTGGGTTCAAGGGAGTCACCTATGAGCAAACGGCCTGGGGCCACACTTTCCCTCAGCCCTTCCCTCCAGGATCTGCTCCGGCAGGCTTTATTGGCTGGCCTAAAGCCAGGGGGAGGGACAATGAATGTTCaagctcctcctcttcctacacaagctcctcctcttcctacaGCAGCAGCAGTGACAGCAGTGACAGCAGTGACAGTGACtacaggcacagagagaggaagaggaggaaaaggaagatgaggaaggagagagggaggagggcgagggaggaggactcagaggagaggaagaggaggaggagagggaagagtctAAGAGATGATGACAcagaagggagaagaggaagagagcatGACGAAGAAGCGGAGGAAGAGAGTAAGAGGAAGAGAAAAAGACTGCACTATAGTAGCAGGAGTCACAGGGAGGGACACAGGGCAAAGAAACGCCGGGAAGAGGATGAAgaaaaagaaggaaggaaggaggagaaagaagagagtaCAGAGGAAAgggtgggaagaggagaggagaaggaggtgcATATTCAGGCTGAGATTCAGGAAGCGATAGAAGAGAGGGAGCAGGCCAAGGAGACCAAGGCCAAACACAGGAAAGACAAGAAGAAGACCAAGGAGAAAGTGGACACCAGGACAGAGGAGGAAAAGCTATGGGATGAGTCCATCATAGGCTTGTGATGCAGAGAACCTCCTGGAACCCACCATCTGAAGACTAAAGCCAGGAACATACTCAATGCAAATATGTCTAGTGACATGATAAAATGTATACAGTTGGTGAACATGAACAAAAGCAACCAAGTTCTACGTGCTTCCCGAACTTTGTTCccatgttcttgtttttttatgTTCACCAACTGTCAGCTCTTGATGATGTCACTAGACGTCTTAACGCGTTAAGTATGTTCCAAGTTTTACAGCTGTCAAGCCGGACATTGCAGACGTCAACAACGACAACAACATTGGCTTACGACGACTGACTTTACACAGTCATGACACAAGCAGTAGTGTAGTAATGCTAGCTGGCTAGCCATATGCTTAGTGTAAAATAAGAGTTTGTGTCATGAATGTAATATAGTTTATTCACATCAGCTGCCATGACTGTTTATTACGTCTGCTATAACGTGCTTCTGACAGCGAGATGATGGGTGTACAAGAAATATGTCATGTTGTCGGCAACCTCGACACGCAACTCTATTGCACATCCATTTTGAAGTAACAGCACACTTCACGGCGCAAAATAATATAATGTTGCAATgacattaaaggcccagtgcagtcaaaaatttgatttcctgtgttttatgtaAGGTtacaaagggagggtatattactagAAACTTTTTAAGTTTACCTTTTAAATACCATAGTTTTGGTACTGTATCTTTCAAGGGTTTTATGTAACCTGCCACAAAACATCTAGTGGCCCATTTTGgaacttcagattatcacaggtgtctgtagtcatctctggccctctgtgtggccttaacACATGTCAAATGTATGAAATAATTAAATACGATTTAAAAATAGACTGACAAACCATTAAAACATTATCCTACATATAAA

Function

NR:

description
zinc finger matrin-type protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610544.2 False 2760 mRNA 0.48 7 73197136 73206983
XM_021610546.2 True 2770 mRNA 0.48 7 73197136 73206996

Neighbor

gene id symbol gene type direction distance location
LOC110528460 NA coding downstream 32904 73163029 ~ 73164232 (-)
pcsk1 LOC106583415 coding downstream 152309 73020932 ~ 73044827 (-)
ell2 LOC106583416 coding downstream 196426 72965547 ~ 73000710 (-)
nudt2 nudt2 coding downstream 297709 72894975 ~ 72899427 (-)
LOC110529025 NA coding downstream 307537 72888394 ~ 72889599 (-)
gnrh2 gon2 coding upstream 934 73207930 ~ 73210424 (-)
LOC110528463 LOC106583412 coding upstream 10270 73217266 ~ 73287242 (-)
LOC110528465 NA coding upstream 81308 73288304 ~ 73299941 (-)
LOC110527146 NA coding upstream 360788 73567784 ~ 73575603 (-)
LOC110528467 LOC106583411 coding upstream 410596 73617592 ~ 73620522 (-)
G645362 NA non-coding downstream 35934 73159725 ~ 73161202 (-)
G645364 NA non-coding downstream 43181 73148685 ~ 73153955 (-)
G645366 NA non-coding downstream 50368 73131526 ~ 73146768 (-)
G645405 NA non-coding upstream 9579 73216575 ~ 73217235 (-)
G645431 NA non-coding upstream 67758 73274754 ~ 73275053 (-)
G645436 NA non-coding upstream 72031 73279027 ~ 73279356 (-)
G645438 NA non-coding upstream 74074 73281070 ~ 73281368 (-)
G645156 NA other downstream 478687 72717746 ~ 72718449 (-)
G645145 NA other downstream 493414 72700709 ~ 72703722 (-)
G644738 LOC106583443 other downstream 1131013 72044221 ~ 72073477 (-)
G643823 NA other downstream 1438326 71756919 ~ 71758810 (-)
LOC110528404 LOC106583471 other downstream 1918356 71274346 ~ 71278978 (-)
G645928 NA other upstream 487577 73694573 ~ 73694925 (-)
G646073 NA other upstream 603906 73810902 ~ 73811457 (-)
LOC110528488 NA other upstream 1899901 75106897 ~ 75107924 (-)
G649025 NA other upstream 2412329 75619325 ~ 75623983 (-)

Expression


Co-expression Network