LOC110527147


Basic Information

Item Value
gene id LOC110527147
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 74602280 ~ 74604189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474084.2
gcttgacatcatgggaaaatctaaagaaaatcagccaagacctcagaaaaaaaggccctggtgtgctttaggaccatgcggacgcctcagAGTGATCGGCAGGCTGTTTTCCCTGATTTCAGTCGGCTGGATTTAGGATGCCATGGACACCACAGGACCAGCATGGGAGAGATAAACAGAGGCAGGATCAGGTGGTGACAGGAGTCTCATCAGGGTCAGGcaaccagggaagaccagtctgtgacagcGCAGAGGAGAACTTTTGCAGATACAACACTTGATTCTctctgtgcagcaaacactggacaagcaAGAAGCTTCAAAGATTCAAAATATTTTAAGGCAGTCTGCCAAACCTCTAAAGTTGATTACCAAACTGTGTCAAGGGTTGATATAGTATTTTCCCAATGACACaaaatatgtaaaacaaaaatgtaagGAAGAGCTGGGAGATATTAttgatgatgaatggatacagataTGTTAAATGCCCAGTCATGTTTATGTAATCTCACACACAAATCACTGCATTTTAAGACAATCTGTAGAATGTACTATATGCCAATGAAACTTAATTTCAGGCTCTCAGAAATGTAATTATTCTGCTGGAGGTGTAAACcacaaaaggggacatatttCTATATGGTATggctggctgaattctggcaaagagtaTGTGCTTTTATCTCAAAATGTCTACACCTCCCTTTtccctgtttttgtttggttggaaatgttgatactggagactgttatcaGAAGAAACTGTAACCTAGCATTTATAATGGCTAAAAAATGCATTGCCATTTATTGGAAGattggttatcctcccacaatggATGGAAGAAATATAAAGTTATGTATCACTGGATGCCTGATATGGAATACTGTACAACAAAAagagtctgtattgaaaacatgcccagGTCAGGGGAGATAACTATTTAGGcaatccctagctgctgggctgctcagtcctggccctatgggtctgttgtcctgttggttgtcactctggccttggcctaacacacctgaaaccaataatgaaAGTTTCACTAAGATCCAaaagctgagtggggtgtgttgggttggggtgCTGCAGTGCCATGGACCCCTAGGGGCAGGACGAGGTgacccagctatattgtgtgcaagtaaaaagagctctacagtactattaggCCTATGATATGAATTATATGAAGGGTgtactgtttctgtgtgttaatgtgtatgtgtgtttttattaAACTTTTGTTTTTCCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474084.2 True 1270 mRNA 0.42 2 74602280 74604189

Neighbor

gene id symbol gene type direction distance location
LOC110528476 LOC106583586 coding downstream 1170 74212515 ~ 74601110 (-)
LOC118965365 NA coding downstream 413188 74166402 ~ 74189092 (-)
LOC118965364 NA coding downstream 448452 74153394 ~ 74153828 (-)
LOC110528474 LOC106583591 coding downstream 664095 73935389 ~ 73938185 (-)
LOC110528472 LOC106565202 coding downstream 822797 73739527 ~ 73779483 (-)
LOC118965317 NA coding upstream 144344 74748533 ~ 74753634 (-)
LOC110528477 LOC107582337 coding upstream 154522 74758711 ~ 74770221 (-)
trim107 LOC106583598 coding upstream 173208 74777397 ~ 74787377 (-)
LOC110528480 LOC106583597 coding upstream 184612 74788801 ~ 74813362 (-)
LOC110528482 LOC106583600 coding upstream 225510 74829699 ~ 74837226 (-)
G647004 NA non-coding downstream 146592 74453584 ~ 74455688 (-)
G646983 NA non-coding downstream 173240 74423347 ~ 74429040 (-)
G646987 NA non-coding downstream 173996 74427640 ~ 74428284 (-)
G646838 NA non-coding downstream 392585 74207813 ~ 74209695 (-)
G646575 NA non-coding downstream 418554 74183356 ~ 74183726 (-)
G647099 NA non-coding upstream 23713 74627902 ~ 74628112 (-)
G647481 NA non-coding upstream 136303 74740492 ~ 74740696 (-)
G647489 NA non-coding upstream 166955 74771144 ~ 74771467 (-)
G647499 NA non-coding upstream 210351 74814540 ~ 74814755 (-)
G647500 NA non-coding upstream 210576 74814765 ~ 74815027 (-)
G646073 NA other downstream 790823 73810902 ~ 73811457 (-)
G645928 NA other downstream 907355 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 1391856 73207930 ~ 73210424 (-)
G645156 NA other downstream 1883831 72717746 ~ 72718449 (-)
G645145 NA other downstream 1898558 72700709 ~ 72703722 (-)
LOC110528488 NA other upstream 502708 75106897 ~ 75107924 (-)
G649025 NA other upstream 1015136 75619325 ~ 75623983 (-)
G649327 LOC106583642 other upstream 1610512 76214701 ~ 76220931 (-)
G649684 LOC100136508 other upstream 2409239 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 2778478 77380754 ~ 77390369 (-)

Expression


Co-expression Network