LOC118965317


Basic Information

Item Value
gene id LOC118965317
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 74748533 ~ 74753634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052670.1
GTCAGTACCCTGTCTAGCCTGCCAGACATTTGAGAGGGTGAAGACTGTTGAGCCGGAGCTGAAGCCCATCAAAGTTGTTTCACCATGGCACATGATCGGTTTGGTGAATGGACCAACCAGACCCTCAAGACTACCATGGGCAAATCCCTTGATTGGTACCAGGAAGGGTGGTCGATCAACCTGAAGGTGAGACTGAACATCGACAAGACTCAGGAGAAACTGAAGGGGAGCTACCGGAGCAGAATCAAGAAGGGGACCAAGTGCTACGACATCCAGGCAAGAAGGATGAAAGGAAGGACGAAAAGAAGGACGAAAGGAAGGATGAAAAGAAGGCGAGACCTGGGAAACTTTGCTGCTTTTCGCTCCTAGCTGGGGTCACCATCTGTTAAAGTGAATAATACTGCCTCACAAAATGGAAGCAGCAGGAAATCAGAATCATCTCCTAGACGGTCGACGAGCAAGGATATCTACTTCGTCAACAGCAAGACCAACTGGCACAACTGGGGACGGCTATGGAAGAGGTTCTTCGCAGTGTTCAACGTCTCGAACATACCTGAGACGCGTTGCCTTCTACTACTGGAGGGTAGTCGACCCAGCGAGCCAGCCCATTTAGCAACCCGCCCAGGTCAACAATGCCCGTTTGTCCCTTCCAGATAAATATGACGGCACATCATCTAAATGCCCTGGCTTCCTACTACAGTGCTCCCTCTACTTTGTGCACCAGATGGGAGACCCCACGACCGAGAGGTCCAAGGTTGGAGGGCGCAAAGGACCCATTCGTCATCCTCACCGACCATCAGAACCTGAGGTACATATGGACAACGAGGAGGCTGACTCCACGCGATGTAAGGTGGGCTCTTTTCTTTATGAGATTTGACCTCACGCTAACCTATTGCCCAAGTTCAAAGAACACCAAAGCCGATGCCCTGTCCCGTCTCTACGATTCTGGAGAGGCTCCTGTCCAGAATGTATCCATAAACCCTTCCTCTCGAGTCGTAGCCCCTGTGGTCTGGGACGTAGATGTGGACATTcgccaggctctggagagggagCCCGCACCCACTACCTGTCCTCCTGAGTGCATGTACGTTCCCATGGGGTTTAAGGGATGGGTTGCTGACCTGGGTGCACACAGCTGTCGTCGCTGAACATCCAGGTACTTCTCATACTACTCAATCTGTCTCCGAGAAgtattggtggcctaccttggcgcAGGACGTTATTCGCTACATCAACTCATGTTCCTCATGTTATGTGCTCAAACCAAATCCTCCCGGCATGCTCCAGCAGGGAAACTCCTTCCCGTGCTTCATGGTGAGATGCCGTAGTCactgggaagctgtaacctataggtcacctccttgaccttgaacggccccacaaaccggggGCTCAGCTTCTTGCTGGGCAGAAGGAGTGGGAGGATCCTGGTAGAGATCCAGACACAATCCCCTGGATGGAACGCCCTACACTTCTGTGAAGCCCAATAGACAAAGATCGACTGTCTGATTCCCCCAGGAGGTATCCCGTCCACCAGAACCAGTGAGTTCGAATCAGTCTGATTGTGCTCTGAGTTGGAGGGGGAACAGCTTGAGgacctggggttctgcccaacacccagacgtggatccacctgatgtcctccatt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052670.1 True 1648 mRNA 0.53 6 74748533 74753634

Neighbor

gene id symbol gene type direction distance location
LOC110527147 NA coding downstream 144344 74602280 ~ 74604189 (-)
LOC110528476 LOC106583586 coding downstream 147423 74212515 ~ 74601110 (-)
LOC118965365 NA coding downstream 559441 74166402 ~ 74189092 (-)
LOC118965364 NA coding downstream 594705 74153394 ~ 74153828 (-)
LOC110528474 LOC106583591 coding downstream 810348 73935389 ~ 73938185 (-)
LOC110528477 LOC107582337 coding upstream 5077 74758711 ~ 74770221 (-)
trim107 LOC106583598 coding upstream 23763 74777397 ~ 74787377 (-)
LOC110528480 LOC106583597 coding upstream 35167 74788801 ~ 74813362 (-)
LOC110528482 LOC106583600 coding upstream 76065 74829699 ~ 74837226 (-)
LOC110528483 LOC106583601 coding upstream 91842 74845476 ~ 75055731 (-)
G647481 NA non-coding downstream 7837 74740492 ~ 74740696 (-)
G647099 NA non-coding downstream 120421 74627902 ~ 74628112 (-)
G647004 NA non-coding downstream 292845 74453584 ~ 74455688 (-)
G646983 NA non-coding downstream 319493 74423347 ~ 74429040 (-)
G646987 NA non-coding downstream 320249 74427640 ~ 74428284 (-)
G647489 NA non-coding upstream 17510 74771144 ~ 74771467 (-)
G647499 NA non-coding upstream 60906 74814540 ~ 74814755 (-)
G647500 NA non-coding upstream 61131 74814765 ~ 74815027 (-)
G647460 LOC106565219 non-coding upstream 71377 74825011 ~ 74827149 (-)
G647463 NA non-coding upstream 84353 74837987 ~ 74840905 (-)
G646073 NA other downstream 937076 73810902 ~ 73811457 (-)
G645928 NA other downstream 1053608 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 1538109 73207930 ~ 73210424 (-)
G645156 NA other downstream 2030084 72717746 ~ 72718449 (-)
G645145 NA other downstream 2044811 72700709 ~ 72703722 (-)
LOC110528488 NA other upstream 353263 75106897 ~ 75107924 (-)
G649025 NA other upstream 865691 75619325 ~ 75623983 (-)
G649327 LOC106583642 other upstream 1461067 76214701 ~ 76220931 (-)
G649684 LOC100136508 other upstream 2259794 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 2629033 77380754 ~ 77390369 (-)

Expression


Co-expression Network