XLOC_002499


Basic Information

Item Value
gene id XLOC_002499
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1423241 ~ 1433140 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005742
gagagtcctcgtaaaccaccaatgcatgtgtgtgtgacactgtatttgtgtttctgtgttcAGGACACAGCCGAAGCCGCTGTTCGccgaggaagaggaggaagaagaggatgACAAAGACGAGCCAGAATGGAAGAAGCGCAAGATCTGAGGAGATATTCTGTTCCCGCTTTACTCTGAGTCCTGCTGTGTTCTGGATGGACGTGTGGAGGGATTTTCCCGCAATTCCGCTCTGCGATTGGAGGGCTTTTGGAAATAATAAGCGCAGAAATAATCCAGCGGATGTCTGTGCTGAAGAGCAGCTGTGATGCACTGAAAACCCTCGAAAGCAAATCAGCGGAGCCATGAAAGTCTGAGAAAAAGAGTGTAATGAGGAACGAAGGATCCCAGCTTCCCCAGTGCAGAggcattcatttttattattagtaacgtacagttgaagtcagaattattagcccccctgcataTTTtattcccccaatttttgttaaaTGGAGAACatattttgttcaacacatttctaatcataatagttttaataactcatttcaaataactggtttatgttctctttgccatgatgacagcacataatattagactagatattcttcaagatactagtattcagcttaaagtgacatctaacAAGGTGATACCAACCATAGCTAGCTATGTTGTTAGATTATTTAGAGCCTTATAGgcaagaagcaatattttataatcactgtggaacttaacaggcagccagtgtaaggagtaTAAAACTGGGGTGATATAATcctattttctagacctggtaagaagcTGCGTTATGCTCTAACTGAGGattattaatagaggatgctgggcaaccagcgaacaaagcattacagtaatccagcctagaggtcataaaagcatgaactaggttttctgcatctgagatagcagatatatatatatatatatatatatatatatatatatatatatatatatatatatatataattttgttttcttttttaaatattttccaaattatgtttaacagagca
>TCONS_00005969
tttaatgtgtgtgtttttgtgtcatgGGTATGACAGAGATATTACTGGAGAAGGTGACTTATGAGGACATTACTGATATCACCATTTTCCAAAAGACTTAAGACAAAATTAGGACACAGCCGAAGCCGCTGTTCGccgaggaagaggaggaagaagaggatgACAAAGACGAGCCAGAATGGAAGAAGCGCAAGATCTGAGGAGATATTCTGTTCCCGCTTTACTCTGAGTGTGAGTTGTGAAGTAAAACCGATGGAGTCACGTCCGTCTGGATTCTCTCAAACTTTCCCAACCTTTATTTGGACTGAGTGCGGTGGAGGACATCTTTACGTCTCTATAAAAGTCTGTCAGTCTATATTGAAGCGGAAGAAATAGAAAATAATGCAGTCATTTTGCTGATAGTGGTTTTTAATTGATTGAGTCGTGCTCGTACTGACAgctcattgttattattttgactAGTATTTCATTATGTTCTTCGGTAGTGTTTGTCTCTTTTTACATACAAGTGAAACACCATAGTGGAGTGTGTTTCTCGCTTCAGCTAACACACTGTTGTATTTGGTATTACGGGTTGTAAagcaaaaatgtgtgtgttttacgTTCACTCAACCTTTAATAAATACTGTTggatatttgttatttttgtggAAGCTGTGCGAGTGGCGCGTCGAGGCGCGCTTTGTGTTGCTGTACGTATCGCTGTGTGCGATCACATGTTTGCGTGACGGTTTGTCGTGTAAACATTGGAGACGTCACGCTAGCACAACACATTCCTTTCCATTgagtcttgtgtgtgtgttggtcttt

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0007049 cell cycle biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032156 septin cytoskeleton cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031105 septin complex cellular_component
GO:0005940 septin ring cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005742 False 1040 lncRNA 0.38 2 1423241 1426474
TCONS_00005969 True 810 lncRNA 0.41 3 1424728 1433140

Neighbor

gene id symbol gene type direction distance location
XLOC_002498 opn4xa coding downstream 103127 1294463 ~ 1320114 (-)
XLOC_002497 pdlim5b coding downstream 147195 1187653 ~ 1276046 (-)
XLOC_002496 bmpr1bb coding downstream 242927 1082961 ~ 1180314 (-)
XLOC_002494 glis3 coding downstream 733071 644574 ~ 690170 (-)
XLOC_002495 NA coding downstream 765835 657051 ~ 657406 (-)
XLOC_002500 WDR70 coding upstream 1816 1434956 ~ 1523289 (-)
XLOC_002501 CABZ01066320.2 coding upstream 108123 1541263 ~ 1544095 (-)
XLOC_002502 CABZ01066320.1 coding upstream 111023 1544163 ~ 1552789 (-)
XLOC_002503 nup155 coding upstream 164130 1597270 ~ 1636452 (-)
XLOC_002504 NA coding upstream 233202 1666342 ~ 1667630 (-)
XLOC_002492 NA non-coding downstream 875040 546202 ~ 548201 (-)
XLOC_002491 NA non-coding downstream 1001588 415997 ~ 421653 (-)
XLOC_002489 NA non-coding downstream 1064534 356555 ~ 358707 (-)
XLOC_002488 NA non-coding downstream 1068584 354093 ~ 354657 (-)
XLOC_002505 NA non-coding upstream 236004 1669144 ~ 1718637 (-)
XLOC_002506 NA non-coding upstream 245143 1678283 ~ 1741175 (-)

Expression


Co-expression Network