LOC110528488


Basic Information

Item Value
gene id LOC110528488
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 75106897 ~ 75107924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474264.2
CATGCAGCCTCCAGCATATTGTTACTGAAGCTGAACCAAACACTCAGACTCACTATCAATTCTCATCACCATGAAGATGATGTTGAccatctctctgctcctcagTGTTGGCTTTGCACTGGCTGATACAATGTCTGTTCCAGAATTGAGAAACGACCTGAACAGACCAGGTTGGAAGGTCATCAAGAACTGTGTGAAAGTGACAACGACCGTGGTAGAGGAGTTTGACAACATGCCGCCGCAGGAGAAGGAGACGGTTCAGATCTTCGGGGGACCAGAGTGTGAGAACAACAATGAGAGAAGCAAAAGAGGATTTGTTCGCATCGGCCGACAACTCTCCAATTACTGAAGCCTTGAGTAGTGTCACCTGGAGAAGACTGACCTGGCCTCCCCAGTTTACGTACGTGGCCCTTGACTGTGGGTATCCGGTGACAGTGGACGATCCAGTACAGTGACAGGCAGTGAAGACGACATGGGAATGTGGGATAATCATGAATTAGAAAGTTCAATTAAATTTATTGGATTCACTCCAACTACTGTCTGTCTGAAAAGTGACACACTATACCCTGTGTTTTGCAGATTTTGATGGTCATAATTAGTTTGCTTCTCTGTTATATACCATCTGGTAACTCTCTCTAACTGTGAAGTCTCTGAGGCCATACTGTAATGTATATGAACACAGTATT
>TU736097
CTCCAGCATATTGTTACTGAAGCTGAACCAAACACTCAGACTCACTATCAATTCTCATCACCATGAAGATGATGTTGAccatctctctgctcctcagTGTTGGCTTTGCACTGGCTGATACAATGTCTGTTCCAGAATTGAGAAACGACCTGAACAGACCAGGTTGGAAGGTCATCAAGAACTGTGTGAAAGTGACAACGACCGTGGTAGAGGAGTTTGACAACATGCCGCCGCAGGAGAAGGAGACGGTTCAGATCTTCGGGGGACCAGAGTGTGAGAACAACAATGAGAGAAGCAAAAGAGGATTTGTTCGCATCGGCCGACAACTCTCCAATTACTGAAGCCTTGAGTAGTGTCACCTGGAGAAGACTGACCTGGCCTCCCCAGTTTACGTACGTGGCCCTTGACTGTGGGTATCCGGTGACAGTGGACGATCCAGTACAGTGACAGGCAGTGAAGACGACATGGGAATGTGGGATAATCATGAATTAGAAAGTTCAATTAAATTTATTGGATTCACTCCAACTACTGTCTGTCTGAAAAGTGACACACTATACCCTGTGTTTTGCAGATTTTGATGGTCATAATTAGTTTGCTTCTCTGTTATATACCATCTGGTAACTCTCTCTAACTGTGAAGTCTCTGAGGCCATACTGTAATGTATATGAACACAGTATTGAAAAGTAACCTTGAATAATCATAATGTATGTTAACGCTCACATTTTTAATGTTGCGTTGGATATGTATTTTATGGAATGCTTCTAATATGATCAAGATAAAAATAGACtcatcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474264.2 False 686 mRNA 0.45 2 75107013 75107924
TU736097 True 794 TUCP 0.42 2 75106897 75107916

Neighbor

gene id symbol gene type direction distance location
LOC110528483 LOC106583601 coding downstream 51282 74845476 ~ 75055731 (-)
LOC110528482 LOC106583600 coding downstream 269787 74829699 ~ 74837226 (-)
LOC110528480 LOC106583597 coding downstream 293651 74788801 ~ 74813362 (-)
trim107 LOC106583598 coding downstream 319636 74777397 ~ 74787377 (-)
LOC110528477 LOC107582337 coding downstream 336792 74758711 ~ 74770221 (-)
LOC110528489 LOC106583603 coding upstream 168857 75276781 ~ 75314879 (-)
LOC110527148 LOC106583596 coding upstream 283780 75391704 ~ 75392659 (-)
LOC110528490 LOC106583604 coding upstream 377385 75485309 ~ 75491382 (-)
LOC110528491 LOC106583605 coding upstream 422453 75530377 ~ 75542507 (-)
trnaq-uug-2 NA coding upstream 599250 75707174 ~ 75707245 (-)
G647534 NA non-coding downstream 169245 74892955 ~ 74937768 (-)
G647549 NA non-coding downstream 183836 74920876 ~ 74923177 (-)
G647463 NA non-coding downstream 266108 74837987 ~ 74840905 (-)
G647460 LOC106565219 non-coding downstream 279864 74825011 ~ 74827149 (-)
G647715 NA non-coding upstream 32484 75140408 ~ 75140617 (-)
G647721 NA non-coding upstream 40086 75148010 ~ 75148480 (-)
G647917 NA non-coding upstream 50393 75158317 ~ 75158648 (-)
G647918 NA non-coding upstream 51393 75159317 ~ 75159516 (-)
G647919 NA non-coding upstream 52410 75160334 ~ 75160623 (-)
G646073 NA other downstream 1295556 73810902 ~ 73811457 (-)
G645928 NA other downstream 1412088 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 1896589 73207930 ~ 73210424 (-)
G645156 NA other downstream 2388564 72717746 ~ 72718449 (-)
G645145 NA other downstream 2403291 72700709 ~ 72703722 (-)
G649025 NA other upstream 511401 75619325 ~ 75623983 (-)
G649327 LOC106583642 other upstream 1106777 76214701 ~ 76220931 (-)
G649684 LOC100136508 other upstream 1905504 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 2274743 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 2921320 78029244 ~ 78029753 (-)

Expression


Co-expression Network