LOC110528490 (LOC106583604)


Basic Information

Item Value
gene id LOC110528490
gene name LOC106583604
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 75485309 ~ 75491382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610592.2
GAGGTGTCAGCCAGATCGTCACTTGAGGAACTTGACTCTCCTTTTTGAAGCCTCCTTGTCCTTATTCCATTGCTCTCTCTTTTGAGAATTCAGGCTTGTAAAGCAGAGTCAACACTACCCTAAAGTTGCAACCATGAGCTTCAGGACAAGCTACAGAAGCGGCGGCAGCAGCATGGGCGGCGGCATGGGGGGCAGCACCACCATTCGCAAGAGTTTCACCAGCCAGTCCTTGGCTGCTCCCGGATCCACCCGGATGAGCAGCGGGTCTGTCCGCCATTCTGGCGCCGGGTTCGGTGGTGGCATGGGTATGGGTGGAGGCAGCGgcttcagcagcagcagcagcgcaGGTGGCTACGGTGGTGGTCTCGGCGCTGGCTATGGTGGTGGTATGGGTGGCGGATTCCATGGCGCCACCATCACAGCTGTCACAAGCAACCAGAGCCTGCTGGCACCACTGAACCTGGCGATCGACCCCAACATCCAGGTTGTCCGCACCCATGAGAAGGAGCAGATCAAGACCCTCAACAACCGCTTTGCCTCCTTCATCGATAAGGTGCGTTTCTTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGGACCAGACCACCACACGCTCCAACATCGACGCCATGTTCGAGGCCTACATCTCCAACCTGCGCAGACAGCTGGACGGCCTGGGCAATGAGAAGATGAAGCTGGAGGGGGAGCTGAAGAACATGCAGGGTCTGGTTGAAGACTTCAAGAACAAGTATGAAGATGAAATCAACAAGCGCGCCTCAGTAGAGAACGAGTTTGTCCTGCTGAAGAAGgaTGTTGACGGTGCTTACATGAACAAGGTGGAGCTGGAGGCCAAGGTTGACGCTCTACAGGATGAGATCAACTTCCTCAGGGCCGTCTACGAGGCGGAGCTGCGTGAGCTGCAGGGCCAGATCAAGGACACCTCTGTGGTGGTAGAGATGGACAACAGCCGTAACCTGGACATGGACTCCATTGTCGCTGAAGTGCGCGCCCAGTACGAGGACATCGCCAACCGCAGCAGAGCTGAGGCCGAGACCTGGTACAAGCAGAAGTATGAAGAGATGCAGAGCTCTGCTGGACAGTATGGTGAAGACCTCCGCTCAACCAAGACTGAGATCGCTGAGCTGAACCGCATGATCGCTCGTCTCCAGAACGAGATTGAGTCCGTCAAGGGTCAGCGGGCCAACCTTGAGGCTCAGATCGCTGAGGCAGAGGAACGCGGTGAGCTGGCAGTGAAGGACGCCAAGCTCCGAATCAGGGACTTGGAGGATGCTCTCCAGAGAGCCAAGCAGGACATGGCCCGCCAGGTGCGCGAGTACCAGGAGCTGATGAATGTCAAGCTGGCCCTGGACATTGAGATTGCCACTTACAGGAAGctgctggagggagaggagagcagAATATCCTCGGGTGGTGCATCTGCAACAATCCATGTGCAGCAGAGCTCTGGTGGCAACTACTCCAGCGCAGGCTCAGGTGGATTCGGCTATGGTGGCGGCAGCAGCAGCTACGGCGGCGGCAGCAGCAGCTATGGTGGCGGCAGCAGCAGCTACGGCAGCGGCGGTGGTGCCACAATCACCAAGTCCATGACATCCACCAGCTCCAGCAGGCGTTTCTAGAGACAGTCAACTCTCCACCCAAACCAGACCCATACCAATCCACGGTGCTACGCAGTAATCTTAGACCTACACAGCTGATTTACAGTCGGATTGATGACCTGTATTTACGTTTATTTTTCAATCCCTCCCAAGACAAAAAAAAGAAGAATGGGCAAGTTGAATTACACTGCCTTGGTAGATTCACTGGAAAACAATGAAAGTATCACTGTTATTTCAGGAACAATACCTGTTCTCCCCTGTATTATTCACCATAATTCACAGGTAACCAATAATGTACAAGTGCCAGTTCCTCACAAGGCCAACATTTCTATATTTCTGCACTGATGTTTAAGGAATATAAAtggaaaaagaaaaagaaaatgtGTGAAAACGTAAACCAACCTTAAAGAAAGCTAGCTAAGGATCTACTCTGTACCTTTGTCAGCTTGTAGCTTGCATCTACATGTATCAGTGGTTGTAGGACATATTGCTCTAGCTTCATACTCATAGATGGCAGTGTCATGGTCATAATCAATTAACTTTGGGCACTTGCTGATTTGGCAGCTGAATGGAGAAAACCATTGACACTATGTGGTGCTATGAACAAGTGATGCCTTCATATTCCTTTTAGGTGATTTATGTATGCTATGAAAGTGATGATGTGTCACATtatgctgctgaggggagaacagctcataataatggctggaatggagtgaatttAATGCTATCACATGGAAACTATGTGTTTGAGTTCTATACCATTACATTACTATGAGTCCGTCCTTcccagttaaggtgccaccaacctcctgtggtgttgTCATAACAAAAATAGGCCTTTTTTGCTAACACATGACATGTCTCTTTCATAGTGTACTGAAGTAGAAGGAACAGTAGTCAATCTTCAGTCACATAACTCAAAAGGATATACTTGTTTGTCAGAGGTTTACATTTTAGAGAAGTTTCCTGTTAATAGTTTTTTCTTTGCTTGGTTTTGCTTTTATTACCATTAGAAGGAAATAATGTTGTGACCAGATTCTACATAATTTGTGACAATTGACTTAACACCAAAAATAACTAAATTAATTAATTTGAGATCTTAAATCACTGTCTCTAGTGTGTGAAATGTTTGCCTTTTTTCTGAATTTTGTGTACTTCACATGCCTCTCTGGCACCATCTAGCTGTGCCTTCTTTGATCAAACTTCAATGTTGAGCATTCTGGAATTTCAGATAATTAAACTCCATTAAACTGA
>XM_021610593.2
CGAGGTGTCAGCCAGATCGTCACTTGAGGAACTTGACTCTCCTTTTTGAAGCCTCCTTGTCCTTATTCCATTGCTCTCTCTTTTGAGAATTCAGGCTTGTAAAGCAGAGTCAACACTACCCTAAAGTTGCAACCATGAGCTTCAGGACAAGCTACAGAAGCGGCGGCAGCAGCATGGGCGGCGGCATGGGGGGCAGCACCACCATTCGCAAGAGTTTCACCAGCCAGTCCTTGGCTGCTCCCGGATCCACCCGGATGAGCAGCGGGTCTGTCCGCCATTCTGGCGCCGGGTTCGGTGGTGGCATGGGTATGGGTGGAGGCAGCGgcttcagcagcagcagcagcgcaGGTGGCTACGGTGGTGGTCTCGGCGCTGGCTATGGTGGTGGTATGGGTGGCGGATTCCATGGCGCCACCATCACAGCTGTCACAAGCAACCAGAGCCTGCTGGCACCACTGAACCTGGCGATCGACCCCAACATCCAGGTTGTCCGCACCCATGAGAAGGAGCAGATCAAGACCCTCAACAACCGCTTTGCCTCCTTCATCGATAAGGTGCGTTTCTTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGGACCAGACCACCACACGCTCCAACATCGACGCCATGTTCGAGGCCTACATCTCCAACCTGCGCAGACAGCTGGACGGCCTGGGCAATGAGAAGATGAAGCTGGAGGGGGAGCTGAAGAACATGCAGGGTCTGGTTGAAGACTTCAAGAACAAGTATGAAGATGAAATCAACAAGCGCGCCTCAGTAGAGAACGAGTTTGTCCTGCTGAAGAAGgaTGTTGACGGTGCTTACATGAACAAGGTGGAGCTGGAGGCCAAGGTTGACGCTCTACAGGATGAGATCAACTTCCTCAGGGCCGTCTACGAGGCGGAGCTGCGTGAGCTGCAGGGCCAGATCAAGGACACCTCTGTGGTGGTAGAGATGGACAACAGCCGTAACCTGGACATGGACTCCATTGTCGCTGAAGTGCGCGCCCAGTACGAGGACATCGCCAACCGCAGCAGAGCTGAGGCCGAGACCTGGTACAAGCAGAAGTATGAAGAGATGCAGAGCTCTGCTGGACAGTATGGTGAAGACCTCCGCTCAACCAAGACTGAGATCGCTGAGCTGAACCGCATGATCGCTCGTCTCCAGAACGAGATTGAGTCCGTCAAGGGTCAGCGGGCCAACCTTGAGGCTCAGATCGCTGAGGCAGAGGAACGCGGTGAGCTGGCAGTGAAGGACGCCAAGCTCCGAATCAGGGACTTGGAGGATGCTCTCCAGAGAGCCAAGCAGGACATGGCCCGCCAGGTGCGCGAGTACCAGGAGCTGATGAATGTCAAGCTGGCCCTGGACATTGAGATTGCCACTTACAGGAAGctgctggagggagaggagagcagAATATCCTCGGGTGGTGCATCTGCAACAATCCATGTGCAGCAGAGCTCTGACTACTCCAGCGCAGGCTCAGGTGGATTCGGCTATGGTGGCGGCAGCAGCAGCTACGGCGGCGGCAGCAGCAGCTATGGTGGCGGCAGCAGCAGCTACGGCAGCGGCGGTGGTGCCACAATCACCAAGTCCATGACATCCACCAGCTCCAGCAGGCGTTTCTAGAGACAGTCAACTCTCCACCCAAACCAGACCCATACCAATCCACGGTGCTACGCAGTAATCTTAGACCTACACAGCTGATTTACAGTCGGATTGATGACCTGTATTTACGTTTATTTTTCAATCCCTCCCAAGACAAAAAAAAGAAGAATGGGCAAGTTGAATTACACTGCCTTGGTAGATTCACTGGAAAACAATGAAAGTATCACTGTTATTTCAGGAACAATACCTGTTCTCCCCTGTATTATTCACCATAATTCACAGGTAACCAATAATGTACAAGTGCCAGTTCCTCACAAGGCCAACATTTCTATATTTCTGCACTGATGTTTAAGGAATATAAAtggaaaaagaaaaagaaaatgtGTGAAAACGTAAACCAACCTTAAAGAAAGCTAGCTAAGGATCTACTCTGTACCTTTGTCAGCTTGTAGCTTGCATCTACATGTATCAGTGGTTGTAGGACATATTGCTCTAGCTTCATACTCATAGATGGCAGTGTCATGGTCATAATCAATTAACTTTGGGCACTTGCTGATTTGGCAGCTGAATGGAGAAAACCATTGACACTATGTGGTGCTATGAACAAGTGATGCCTTCATATTCCTTTTAGGTGATTTATGTATGCTATGAAAGTGATGATGTGTCACATtatgctgctgaggggagaacagctcataataatggctggaatggagtgaatttAATGCTATCACATGGAAACTATGTGTTTGAGTTCTATACCATTACATTACTATGAGTCCGTCCTTcccagttaaggtgccaccaacctcctgtggtgttgTCATAACAAAAATAGGCCTTTTTTGCTAACACATGACATGTCTCTTTCATAGTGTACTGAAGTAGAAGGAACAGTAGTCAATCTTCAGTCACATAACTCAAAAGGATATACTTGTTTGTCAGAGGTTTACATTTTAGAGAAGTTTCCTGTTAATAGTTTTTTCTTTGCTTGGTTTTGCTTTTATTACCATTAGAAGGAAATAATGTTGTGACCAGATTCTACATAATTTGTGACAATTGACTTAACACCAAAAATAACTAAATTAATTAATTTGAGATCTTAAATCACTGTCTCTAGTGTGTGAAATGTTTGCCTTTTTTCTGAATTTTGTGTACTTCACATGCCTCTCTGGCACCATCTAGCTGTGCCTTCTTTGATCAAACTTCAATGTTGAGCATTCTGGAATTTCAGATAATTAAACTCCATTAAACTGA

Function

NR:

description
keratin, type II cytoskeletal 8-like isoform X2

GO:

id name namespace
GO:0045095 keratin filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07605 KRT2; type II keratin, basic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610592.2 False 2887 mRNA 0.49 9 75485309 75491381
XM_021610593.2 True 2882 mRNA 0.49 9 75485309 75491382

Neighbor

gene id symbol gene type direction distance location
LOC110527148 LOC106583596 coding downstream 92650 75391704 ~ 75392659 (-)
LOC110528489 LOC106583603 coding downstream 170430 75276781 ~ 75314879 (-)
LOC110528488 NA coding downstream 377385 75106897 ~ 75107924 (-)
LOC110528483 LOC106583601 coding downstream 429578 74845476 ~ 75055731 (-)
LOC110528482 LOC106583600 coding downstream 648083 74829699 ~ 74837226 (-)
LOC110528491 LOC106583605 coding upstream 38995 75530377 ~ 75542507 (-)
trnaq-uug-2 NA coding upstream 215792 75707174 ~ 75707245 (-)
LOC110528500 LOC106583615 coding upstream 555666 76047048 ~ 76060389 (-)
LOC110528501 LOC106565236 coding upstream 577693 76069075 ~ 76085739 (-)
LOC110528502 LOC106565237 coding upstream 605781 76097163 ~ 76167318 (-)
G648983 NA non-coding downstream 1118 75483934 ~ 75484191 (-)
G648114 NA non-coding downstream 20540 75464450 ~ 75464769 (-)
G648097 NA non-coding downstream 30638 75454439 ~ 75454671 (-)
G648074 NA non-coding downstream 62428 75422046 ~ 75422881 (-)
G648075 NA non-coding downstream 63867 75419167 ~ 75421442 (-)
G648972 NA non-coding upstream 45779 75537161 ~ 75591273 (-)
G649036 NA non-coding upstream 101261 75592643 ~ 75593171 (-)
G649041 NA non-coding upstream 109528 75600910 ~ 75601170 (-)
G649025 NA non-coding upstream 129158 75619325 ~ 75623983 (-)
G649027 NA non-coding upstream 134117 75625499 ~ 75629826 (-)
G646073 NA other downstream 1673852 73810902 ~ 73811457 (-)
G645928 NA other downstream 1790384 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 2274885 73207930 ~ 73210424 (-)
G645156 NA other downstream 2766860 72717746 ~ 72718449 (-)
G649327 LOC106583642 other upstream 723319 76214701 ~ 76220931 (-)
G649684 LOC100136508 other upstream 1522046 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 1891285 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 2537862 78029244 ~ 78029753 (-)

Expression


Co-expression Network