LOC110528491 (LOC106583605)



Basic Information


Item Value
gene id LOC110528491
gene name LOC106583605
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 75530377 ~ 75542507 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036984066.1
AACAGTGATCTCCATCTACAGAGAGTCTCTCAGTCTCCACAGACCACCTCCTCTAACACTGGCTAAAACGTAAGTTgtcatgtccaccagagctgtgaaGAGCTACTCTGTGAGGCCCTCCTCTGCAGGCATGGGCTCCCCTCAGAACTTCAGCAGCAGCTCCTACTCCGGTGGATATGGCGGTGCCAGACAGAGCTACAGCGTCCGCAGCTCCTACGGGGGCGTTGGCAGCAGCGCCAGGGGcgttgcagcaggtggttataGGGTAATTGTGGCTGGGGGGTCCGTGCAAAGACGGGGTGTGATGGAGTTTGGGTATACGGTCATGGGTGTTGGCGGTGGTATGGGTGTTGGCGGCGGTATGGGTATGGGGGGTGGTATGGGGGGTGGGACGATGAACTGTACTGGACCCCCTCAAATCACAGCTGTTCAGGTCAACCAGAGCCTGCTGGCACCACTGAACCTGGCGATCGACCCCAACATCCAGGTTGTCCGCACCCATGAGAAGGAGCAGATCAAGACCCTCAACAACCGCTTTGCCTCCTTCATCGATAAGGTGCGTTTCTTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGGACCAGACCACCACCTGCTCCAACATCGACGCCGTGTTCGAGGCCTACATCTCCAACCTGCGCAGACAGCTGGACGACCTGGGCAACGAGAAGATGAGGTTGGAGTCGGACCTGCACAACATGAAGGGTCTGGTGGAGAACTTCAAAACCAAGTATGAGGATGAGATCAACAAGCGTAACGAGTCTGAAAACAATTTTGTTCTCCTGAAGAAGGATACAGATTCTGCATACATGATCAAGATGGAGCTGGAGGCCAAGCTGGACTGTCTCACTGATGAGATTGAGTTCCTCAGGAGTATCTATGATATGGAGCTGCGTGAGCTGCAGGGCCAGATCAAGGACACCTCTGTGGTGGTAGAGATGGACAACAGCCGTAACCTGGACATGGACTCCATTGTCGCTGAAGTGCGCGCCCAGTACGAGGACATCGCCAACCGCAGCAGAGCTGAGGCCGAGACTTGGTACACACAGAAGTATGAACAGATGCAGGTGTCAGCCAGGAAGTATGGGGACGACCTGAAAAACACCAAGGCAGAGATCGCAGATATGAACCGTAAAATCATGAGATATCAGTCTGAAATTGACATGATGAAGGGTCAGCGCAACCACCTGGAGAACCAGATTCCTAAGGCAGAGGAACGCGGTGAGCTGGCGGTGAAGGACGCCAGGCTTCGCATCAACGATCTCAAGGTGGCCCTGCAGAGAGCCAAACAGGACATGACCATGCAAGTCCGCCAGTACCAGGAGCTGATGAATGTCAAGCTGGCCCTGGACATTGAGATCGCCACCTACAGGAAGctgctggagggagaggagagcagGCTCGTGACTGGAATCAAGTCGGTCAGCATCTCCAAACAGTCTTCTTCAATAAACTACAACTCTTACCCCCTGGAGAGCAGTCACACCACTAGCTACGCCCAGGGCTCAATAGGCGGATACAAGAGCAGCAGCACTTACATCAGTGGCCATGAGAACAGCCATGTAGGCCACAGTTTTGACCTGCCTGGCAGTATCATCCTGGGAGCCACCAACGGTATCCAGGTCTCTACCAGCAGAGACGTGGATGCCAGCATCAGCCTGGGAGGCAGCAAAGGCACCAGCAGAGATGTGGATTCCAGCATCACCCTGGGAGGCAGCAAAGGCACCAGCAGAGATGTGGATTCCAGCATCACCCTGGGAGGCAGCAAAGGCACCAGCAGAGACATGGATTCCACTGTCACCCGAGGAGATGAATGAGGAGACTTCGTCATCACAGGCGACCATGGAATTTGTTTATTCTTTCTGTGACAGATTTGTGCTTCCACAACCTACTTTTCAGCCTTCCACTCACATTCATTTGACTTTTCTAGCCAGGTTAGTACATAATTTACCTGCTAAACAGTGACCTTTCAAACAGGCTAATTAGATCCACCTGGAATCACAGGCAGTCTAACTGTAACTTAATTTTCCTACCCACAAATAGTCTGGTTTAAAGTGGTAAATGTGAAGGGTTATGTATTCCTGAAAGGCCCCTGAAAGTCAACCCCTTATGCCTATTTGGCCTACTTGTGTGGTCTCGTTCACTGTCAATGGAAGCTATCCATCTCATTTGTCTGTCCACACCTGAGTCACCAGCAGGTGCCATTGTAGCAGGTGTTTTTCTCTCTGCTTGCTCAGAGACCCATTAAAGCACTAGGAGAA
>XM_036984067.1
AACAGTGATCTCCATCTACAGAGAGTCTCTCAGTCTCCACAGACCACCTCCTCTAACACTGGCTAAAACGTAAGTTgtcatgtccaccagagctgtgaaGAGCTACTCTGTGAGGCCCTCCTCTGCAGGCATGGGCTCCCCTCAGAACTTCAGCAGCAGCTCCTACTCCGGTGGATATGGCGGTGCCAGACAGAGCTACAGCGTCCGCAGCTCCTACGGGGGCGTTGGCAGCAGCGCCAGGGGcgttgcagcaggtggttataGGGTAATTGTGGCTGGGGGGTCCGTGCAAAGACGGGGTGTGATGGAGTTTGGGTATACGGTCATGGGTGTTGGCGGTGGTATGGGTGTTGGCGGCGGTATGGGTATGGGGGGTGGTATGGGGGGTGGGACGATGAACTGTACTGGACCCCCTCAAATCACAGCTGTTCAGGTCAACCAGAGCCTGCTGGCACCACTGAACCTGGCGATCGACCCCAACATCCAGGTTGTCCGCACCCATGAGAAGGAGCAGATCAAGACCCTCAACAACCGCTTTGCCTCCTTCATCGATAAGGTGCGTTTCTTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGGACCAGACCACCACCTGCTCCAACATCGACGCCGTGTTCGAGGCCTACATCTCCAACCTGCGCAGACAGCTGGACGACCTGGGCAACGAGAAGATGAGGTTGGAGTCGGACCTGCACAACATGAAGGGTCTGGTGGAGAACTTCAAAACCAAGTATGAGGATGAGATCAACAAGCGTAACGAGTCTGAAAACAATTTTGTTCTCCTGAAGAAGGAGCTGCGTGAGCTGCAGGGCCAGATCAAGGACACCTCTGTGGTGGTAGAGATGGACAACAGCCGTAACCTGGACATGGACTCCATTGTCGCTGAAGTGCGCGCCCAGTACGAGGACATCGCCAACCGCAGCAGAGCTGAGGCCGAGACTTGGTACACACAGAAGTATGAACAGATGCAGGTGTCAGCCAGGAAGTATGGGGACGACCTGAAAAACACCAAGGCAGAGATCGCAGATATGAACCGTAAAATCATGAGATATCAGTCTGAAATTGACATGATGAAGGGTCAGCGCAACCACCTGGAGAACCAGATTCCTAAGGCAGAGGAACGCGGTGAGCTGGCGGTGAAGGACGCCAGGCTTCGCATCAACGATCTCAAGGTGGCCCTGCAGAGAGCCAAACAGGACATGACCATGCAAGTCCGCCAGTACCAGGAGCTGATGAATGTCAAGCTGGCCCTGGACATTGAGATCGCCACCTACAGGAAGctgctggagggagaggagagcagGCTCGTGACTGGAATCAAGTCGGTCAGCATCTCCAAACAGTCTTCTTCAATAAACTACAACTCTTACCCCCTGGAGAGCAGTCACACCACTAGCTACGCCCAGGGCTCAATAGGCGGATACAAGAGCAGCAGCACTTACATCAGTGGCCATGAGAACAGCCATGTAGGCCACAGTTTTGACCTGCCTGGCAGTATCATCCTGGGAGCCACCAACGGTATCCAGGTCTCTACCAGCAGAGACGTGGATGCCAGCATCAGCCTGGGAGGCAGCAAAGGCACCAGCAGAGATGTGGATTCCAGCATCACCCTGGGAGGCAGCAAAGGCACCAGCAGAGATGTGGATTCCAGCATCACCCTGGGAGGCAGCAAAGGCACCAGCAGAGACATGGATTCCACTGTCACCCGAGGAGATGAATGAGGAGACTTCGTCATCACAGGCGACCATGGAATTTGTTTATTCTTTCTGTGACAGATTTGTGCTTCCACAACCTACTTTTCAGCCTTCCACTCACATTCATTTGACTTTTCTAGCCAGGTTAGTACATAATTTACCTGCTAAACAGTGACCTTTCAAACAGGCTAATTAGATCCACCTGGAATCACAGGCAGTCTAACTGTAACTTAATTTTCCTACCCACAAATAGTCTGGTTTAAAGTGGTAAATGTGAAGGGTTATGTATTCCTGAAAGGCCCCTGAAAGTCAACCCCTTATGCCTATTTGGCCTACTTGTGTGGTCTCGTTCACTGTCAATGGAAGCTATCCATCTCATTTGTCTGTCCACACCTGAGTCACCAGCAGGTGCCATTGTAGCAGGTGTTTTTCTCTCTGCTTGCTCAGAGACCCATTAAAGCACTAGGAGAA
>XM_036984068.1
CAGTGATCTCCATCTACAGAGAGTCTCTCAGTCTCCACAGACCACCTCCTCTAACACTGGCTAAAACGTAAGTTgtcatgtccaccagagctgtgaaGAGCTACTCTGTGAGGCCCTCCTCTGCAGGCATGGGCTCCCCTCAGAACTTCAGCAGCAGCTCCTACTCCGGTGGATATGGCGGTGCCAGACAGAGCTACAGCGTCCGCAGCTCCTACGGGGGCGTTGGCAGCAGCGCCAGGGGcgttgcagcaggtggttataGGGTAATTGTGGCTGGGGGGTCCGTGCAAAGACGGGGTGTGATGGAGTTTGGGTATACGGTCATGGGTGTTGGCGGTGGTATGGGTGTTGGCGGCGGTATGGGTATGGGGGGTGGTATGGGGGGTGGGACGATGAACTGTACTGGACCCCCTCAAATCACAGCTGTTCAGGTCAACCAGAGCCTGCTGGCACCACTGAACCTGGCGATCGACCCCAACATCCAGGTTGTCCGCACCCATGAGAAGGAGCAGATCAAGACCCTCAACAACCGCTTTGCCTCCTTCATCGATAAGGTGCGTTTCTTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGGACCAGACCACCACCTGCTCCAACATCGACGCCGTGTTCGAGGCCTACATCTCCAACCTGCGCAGACAGCTGGACGACCTGGGCAACGAGAAGATGAGGTTGGAGTCGGACCTGCACAACATGAAGGGTCTGGTGGAGAACTTCAAAACCAAGTATGAGGATGAGATCAACAAGCGTAACGAGTCTGAAAACAATTTTGTTCTCCTGAAGAAGGATACAGATTCTGCATACATGATCAAGATGGAGCTGGAGGCCAAGCTGGACTGTCTCACTGATGAGATTGAGTTCCTCAGGAGTATCTATGATATGGAGCTGCGTGAGCTGCAGGGCCAGATCAAGGACACCTCTGTGGTGGTAGAGATGGACAACAGCCGTAACCTGGACATGGACTCCATTGTCGCTGAAGTGCGCGCCCAGTACGAGGACATCGCCAACCGCAGCAGAGCTGAGGCCGAGACTTGGTACACACAGAAGTATGAACAGATGCAGGTGTCAGCCAGGAAGTATGGGGACGACCTGAAAAACACCAAGGCAGAGATCGCAGATATGAACCGTAAAATCATGAGATATCAGTCTGAAATTGACATGATGAAGGGTCAGCGCAACCACCTGGAGAACCAGATTCCTAAGGCAGAGGAACGCGGTGAGCTGGCGGTGAAGGACGCCAGGCTTCGCATCAACGATCTCAAGGTGGCCCTGCAGAGAGCCAAACAGGACATGACCATGCAAGTCCGCCAGTACCAGGAGCTGATGAATGTCAAGCTGGCCCTGGACATTGAGATCGCCACCTACAGGAAGctgctggagggagaggagagcagAAGGAATGAATAGAAGGgacatccccat

Function


NR:

description
keratin, type II cytoskeletal 8-like

GO:

id name namespace
GO:0045095 keratin filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036984066.1 False 2296 mRNA 0.53 9 75530377 75542507
XM_036984067.1 False 2200 mRNA 0.53 8 75530377 75542507
XM_036984068.1 True 1460 mRNA 0.55 8 75535647 75542505

Neighbor


gene id symbol gene type direction distance location
LOC110528490 LOC106583604 coding downstream 38995 75485309 ~ 75491382 (-)
LOC110527148 LOC106583596 coding downstream 137718 75391704 ~ 75392659 (-)
LOC110528489 LOC106583603 coding downstream 215498 75276781 ~ 75314879 (-)
LOC110528488 NA coding downstream 422453 75106897 ~ 75107924 (-)
LOC110528483 LOC106583601 coding downstream 474646 74845476 ~ 75055731 (-)
trnaq-uug-2 NA coding upstream 164667 75707174 ~ 75707245 (-)
LOC110528500 LOC106583615 coding upstream 504541 76047048 ~ 76060389 (-)
LOC110528501 LOC106565236 coding upstream 526568 76069075 ~ 76085739 (-)
LOC110528502 LOC106565237 coding upstream 554656 76097163 ~ 76167318 (-)
LOC110528503 LOC106583643 coding upstream 636046 76178553 ~ 76192151 (-)
G648983 NA non-coding downstream 46186 75483934 ~ 75484191 (-)
G648114 NA non-coding downstream 65608 75464450 ~ 75464769 (-)
G648097 NA non-coding downstream 75706 75454439 ~ 75454671 (-)
G648074 NA non-coding downstream 107496 75422046 ~ 75422881 (-)
G648075 NA non-coding downstream 108935 75419167 ~ 75421442 (-)
G649036 NA non-coding upstream 50136 75592643 ~ 75593171 (-)
G649041 NA non-coding upstream 58403 75600910 ~ 75601170 (-)
G649025 NA non-coding upstream 78033 75619325 ~ 75623983 (-)
G649027 NA non-coding upstream 82992 75625499 ~ 75629826 (-)
G649056 NA non-coding upstream 99403 75641910 ~ 75642242 (-)
G646073 NA other downstream 1718920 73810902 ~ 73811457 (-)
G645928 NA other downstream 1835452 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 2319953 73207930 ~ 73210424 (-)
G645156 NA other downstream 2811928 72717746 ~ 72718449 (-)
G649327 LOC106583642 other upstream 672194 76214701 ~ 76220931 (-)
G649684 LOC100136508 other upstream 1470921 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 1840160 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 2486737 78029244 ~ 78029753 (-)

Expression



Co-expression Network