XLOC_024992


Basic Information

Item Value
gene id XLOC_024992
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 3669634 ~ 3674174 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052544
atttaattacagaaatttactgtaaaatactggacATTAAATAACCGAAACTTGCTGTAAAATACCGgacataaaataactgaaattttccgtaaaataacggatattaaaatacagaaattcacTGTAAAATACCAGACattcaattacagaaatttactgtgaaataccgtacatttaaattacagaaatttactgtaaaataacggacattaaataactaaaatttgctgtaaaataacgaatattaaattacagaaacttacttGCAttcaaatttctgtaattcaacctatgttattttacagttaatctctgtaatttaatggccgttattttacggtttattttcaGCACCCTAGCAGctggaaataaactgtaaaattacagggtttttttacagtgtagattaatTGTATAAAAGcacatattaaaaatgttaaaatttaatggttaaataaaaattattaaagttACGATTTCAGTAAAAATGATCAtggtagtttattattattattattattattattgttattattattatttagttgttttgttAGTGCACACTgtagatttttacaaaaataataacataaaacaatttaaataaaatggtccatcataaataaaatcataattttgacCTAAGCTATTTCAAATTATTCAAATTACAgcgatttattaatattgttattgttgtcagTGCACACTGTGGATTATTCCTATAAAAGtccataattcatatttttaaaaaaaaaaaaggtcaatcaTGGGTGATATTGTAATTCTGACCTAAAATGTCAAATTCTTCAGAAAaatggtcagttttttttttttttttgatttatttatttaatttttttttccatttgtgcacATTGTGGATTATTTCTATGGAGGCCCCTGAGAACAAAACAACACACTATATTAAAACTGCTGGGTTTTTAAACTCATGTTTGGGTCAATATATGGACAAACCCATCAAACAAATGTTTGGCTCCATTGTTTTTATATCAAGTTTATAACATGAAATTTGGGATTCTGGGGTTCGTGCACACTGCATTATTTATGCAGTGAATATGTAAAAGCccatgaaaaaaaagttaaataaaatgatcAATCATAAGTgatattgtaatttaattttaataataataataaattatttttttgtgcacACTGTggattattaatataaaaatgtaaaaatttaacgGTCGATCGGGATGATATTTGAAGCTCAAAAATCCCAATTAAAGTTGTCATATTTGATTtcttattaatgttgttattgtgGTTTGTGCACACTGCATTACTATTAAAACCCcataagaaaaagaaataaaataaaatggtcaaTCAAAGGTGATGatataattctgaccttaaaatccCAAATTATTATAGTTaggacttttcttttttcttttcttttctttttttgtaagtgCACTCTGTGGATTATTAATATGGAAGCACTCTATAATGaaagaaaatgctgggttgtttaaacTCACTTCTGGGTCGATATATGGATCTACAACtgttgggttaattttttcaATTAAGTTTATAGCATCAAAATGTTGTTTCTCCATATGTGACCCAAAATTTGTCACCAGAATTGCTTTAGGAGTATTGTAACTTGTGTGAGTTTTGAGTTTCTGCAAAATAATCCACCGGTGAGAAGTAAAACAATACGGATTTCATTTCGAATCAAGATTATTTTGCGTACAGAATAATTAGCGTGTGTTAAAGAAAAACCCACTTAATTTTAGACTTTAGATTATTTCTGAAACAGAAACTATATTTTGTGCCTGTCCAGAAAattcagcaaatttaagacttttttagttGTTTAGACCAGAAACAAGACTCCAATGTAGACAATCAATATTTGCAGTGCAATCACTATCACCCTGCTGAACAACACCAGCATGACCATCAGCAGAGCTTCAGATGTAAACGTAGATGATTTTTTATATGATGATGTGTCGTCTCAGGGAACACGAGTCAGACTGAGAAACGTTCAGTGCCTTTGCTGATATCTGTATGTCTTTGATCATCGCTGTCGTAATCATTATCTTCCTCATCAGGATGTTTGTGATCTGTGCTCTTCTCCTTTATTTGACCAATGAATGATTTCCAGCCTCATTACTCACTGTTGTGTGCTGTTTTTGTTGATATTCTTCTTT
>TCONS_00052545
aaaaatcagtaattttacggtttattatattaaaaaaacataaaatacagaacattaaataacagaaatttactgtaaagtaacggacattaaattacagaaatttactgtaaaataccggacattaaataacagaaatttactttaaaataacggacattaaataacagaaatttactgtaaagtaacggactttaaattacagaaatttactgtaaaataccggacattaaataacagaaatttactttaaaataacggacattaaataacagaaatttactgtaaagtaacggactttaaattacagaaatttactgtaaaataccggacATTAAATAACCGAAACTTGCTGTAAAATACCGgacataaaataactgaaattttccgtaaaataacggatattaaaatacagaaattcacTGTAAAATACCAGACattcaattacagaaatttactgtgaaataccgtacatttaaattacagaaatttactgtaaaataacggacattaaataactaaaatttgctgtaaaataacgaatattaaattacagaaacttacttGCAttcaaatttctgtaattcaacctatgttattttacagttaatctctgtaatttaatggccgttattttacggtttattttcaGCACCCTAGCAGctggaaataaactgtaaaattacagggtttttttacagtgtagattaatTGTATAAAAGcacatattaaaaatgttaaaatttaatggttaaataaaaattattaaagttACGATTTCAGTAAAAATGATCAtggtagtttattattattattattattattattgttattattattatttagttgttttgttAGTGCACACTgtagatttttacaaaaataataacataaaacaatttaaataaaatggtccatcataaataaaatcataattttgacCTAAGCTATTTCAAATTATTCAAATTACAgcgatttattaatattgttattgttgtcagTGCACACTGTGGATTATTCCTATAAAAGtccataattcatatttttaaaaaaaaaaaaggtcaatcaTGGGTGATATTGTAATTCTGACCTAAAATGTCAAATTCTTCAGAAAaatggtcagttttttttttttttttgatttatttatttaatttttttttccatttgtgcacATTGTGGATTATTTCTATGGAGGCCCCTGAGAACAAAACAACACACTATATTAAAACTGCTGGGTTTTTAAACTCATGTTTGGGTCAATATATGGACAAACCCATCAAACAAATGTTTGGCTCCATTGTTTTTATATCAAGTTTATAACATGAAATTTGGGATTCTGGGGTTCGTGCACACTGCATTATTTATGCAGTGAATATGTAAAAGCccatgaaaaaaaagttaaataaaatgatcAATCATAAGTgatattgtaatttaattttaataataataataaattatttttttgtgcacACTGTggattattaatataaaaatgtaaaaatttaacgGTCGATCGGGATGATATTTGAAGCTCAAAAATCCCAATTAAAGTTGTCATATTTGATTtcttattaatgttgttattgtgGTTTGTGCACACTGCATTACTATTAAAACCCcataagaaaaagaaataaaataaaatggtcaaTCAAAGGTGATGatataattctgaccttaaaatccCAAATTATTATAGTTaggacttttcttttttcttttcttttctttttttgtaagtgCACTCTGTGGATTATTAATATGGAAGCACTCTATAATGaaagaaaatgctgggttgtttaaacTCACTTCTGGGTCGATATATGGATCTACAACtgttgggttaattttttcaATTAAGTTTATAGCATCAAAATGTTGTTTCTCCATATGTGACCCAAAATTTGTCACCAGAATTGCTTTAGGAGTATTGTAACTTGTGTGAGTTTTGAGTTTCTGCAAAATAATCCACCGGTGAGAAGTAAAACAATACGGATTTCATTTCGAATCAAGATTATTTTGCGTACAGAATAATTAGCGTGTGTTAAAGAAAAACCCACTTAATTTTAGACTTTAGATTATTTCTGAAACAGAAACTATATTTTGTGCCTGTCCAGAAAattcagcaaatttaagacttttttagttGTTTAGACCAGAAACAAGACTCCAATGTAGACAATCAATATTTGCAGTGCAATCACTATCACCCTGCTGAACAACACCAGCATGACCATCAGCAGAGCTTCAGATGTAAACGTAGATGATTTTTTATATGATGATGTGTCGTCTCAGGGAACACGAGTCAGACTGAGAAACGTTCAGTGCCTTTGCTGATATCTGTATGTCTTTGATCATCGCTGTCGTAATCATTATCTTCCTCATCAGGATGTTTGTGATCTGTGCTCTTCTCCTTTATTTGACCAATGAATGATTTCCAGCCTCATTACTCACTGTTGTGTGCTGTTTTTGTTGATATTCTTCTTT
>TCONS_00052546
gaaatttactgtaaaataacggacattaaattacaaaaatttactgtaaaataacggacattaaataacagaaatttaccgtaaaataacagatattaaattacagacatttactgtgaaaaaccagatattaaattacagaaaattactgtaaaatactggACATTAAATAACCGAAACTTGCTGTAAAATACCGgacataaaataactgaaattttccgtaaaataacggatattaaaatacagaaattcacTGTAAAATACCAGACattcaattacagaaatttactgtgaaataccgtacatttaaattacagaaatttactgtaaaataacggacattaaataactaaaatttgctgtaaaataacgaatattaaattacagaaacttacttGCAttcaaatttctgtaattcaacctatgttattttacagttaatctctgtaatttaatggccgttattttacggtttattttcaGCACCCTAGCAGctggaaataaactgtaaaattacagggtttttttacagtgtagattaatTGTATAAAAGcacatattaaaaatgttaaaatttaatggttaaataaaaattattaaagttACGATTTCAGTAAAAATGATCAtggtagtttattattattattattattattattgttattattattatttagttgttttgttAGTGCACACTgtagatttttacaaaaataataacataaaacaatttaaataaaatggtccatcataaataaaatcataattttgacCTAAGCTATTTCAAATTATTCAAATTACAgcgatttattaatattgttattgttgtcagTGCACACTGTGGATTATTCCTATAAAAGtccataattcatatttttaaaaaaaaaaaaggtcaatcaTGGGTGATATTGTAATTCTGACCTAAAATGTCAAATTCTTCAGAAAaatggtcagttttttttttttttttgatttatttatttaatttttttttccatttgtgcacATTGTGGATTATTTCTATGGAGGCCCCTGAGAACAAAACAACACACTATATTAAAACTGCTGGGTTTTTAAACTCATGTTTGGGTCAATATATGGACAAACCCATCAAACAAATGTTTGGCTCCATTGTTTTTATATCAAGTTTATAACATGAAATTTGGGATTCTGGGGTTCGTGCACACTGCATTATTTATGCAGTGAATATGTAAAAGCccatgaaaaaaaagttaaataaaatgatcAATCATAAGTgatattgtaatttaattttaataataataataaattatttttttgtgcacACTGTggattattaatataaaaatgtaaaaatttaacgGTCGATCGGGATGATATTTGAAGCTCAAAAATCCCAATTAAAGTTGTCATATTTGATTtcttattaatgttgttattgtgGTTTGTGCACACTGCATTACTATTAAAACCCcataagaaaaagaaataaaataaaatggtcaaTCAAAGGTGATGatataattctgaccttaaaatccCAAATTATTATAGTTaggacttttcttttttcttttcttttctttttttgtaagtgCACTCTGTGGATTATTAATATGGAAGCACTCTATAATGaaagaaaatgctgggttgtttaaacTCACTTCTGGGTCGATATATGGATCTACAACtgttgggttaattttttcaATTAAGTTTATAGCATCAAAATGTTGTTTCTCCATATGTGACCCAAAATTTGTCACCAGAATTGCTTTAGGAGTATTGTAACTTGTGTGAGTTTTGAGTTTCTGCAAAATAATCCACCGGTGAGAAGTAAAACAATACGGATTTCATTTCGAATCAAGATTATTTTGCGTACAGAATAATTAGCGTGTGTTAAAGAAAAACCCACTTAATTTTAGACTTTAGATTATTTCTGAAACAGAAACTATATTTTGTGCCTGTCCAGAAAattcagcaaatttaagacttttttagttGTTTAGACCAGAAACAAGACTCCAATGTAGACAATCAATATTTGCAGTGCAATCACTATCACCCTGCTGAACAACACCAGCATGACCATCAGCAGAGCTTCAGATGTAAACGTAGATGATTTTTTATATGATGATGTGTCGTCTCAGGGAACACGAGTCAGACTGAGAAACGTTCAGTGCCTTTGCTGATATCTGTATGTCTTTGATCATCGCTGTCGTAATCATTATCTTCCTCATCAGGATGTTTGTGATCTGTGCTCTTCTCCTTTATTTGACCAATGAATGATTTCCAGCCTCATTACTCACTGTTGTGTGCTGTTTTTGTTGATATTCTTCTTT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0009888 tissue development biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0060537 muscle tissue development biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052544 False 2195 lncRNA 0.29 2 3669634 3674174
TCONS_00052545 False 2493 lncRNA 0.28 2 3671087 3674174
TCONS_00052546 True 2324 lncRNA 0.28 2 3671781 3674174
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Neighbor

gene id symbol gene type direction distance location
XLOC_024990 pick1 coding upstream 34785 3610140 ~ 3634849 (+)
XLOC_024989 CR589947.3 coding upstream 66286 3598555 ~ 3603348 (+)
XLOC_024988 CR589947.2 coding upstream 91337 3573696 ~ 3578297 (+)
XLOC_024987 NA coding upstream 96803 3571827 ~ 3572831 (+)
XLOC_024986 CR589947.1 coding upstream 119022 3545825 ~ 3550612 (+)
XLOC_024993 art4 coding downstream 6942 3681116 ~ 3686482 (+)
XLOC_024994 BX908804.1 coding downstream 19243 3693417 ~ 3695256 (+)
XLOC_024995 BX908804.3 coding downstream 66555 3740729 ~ 3741748 (+)
XLOC_024996 pmm1 coding downstream 136745 3810919 ~ 3821845 (+)
XLOC_024997 si:ch73-338o16.4 coding downstream 178440 3852614 ~ 3886784 (+)
XLOC_025429 BX649540.1 misc downstream 26574565 30248739 ~ 30249036 (+)
XLOC_024984 NA non-coding upstream 179974 3483002 ~ 3489660 (+)
XLOC_024981 NA non-coding upstream 388760 3279609 ~ 3280874 (+)
XLOC_024977 NA non-coding upstream 597167 3022061 ~ 3072467 (+)
XLOC_024975 NA non-coding upstream 699649 2966612 ~ 2969985 (+)
XLOC_024999 BX005421.3 non-coding downstream 373615 4047789 ~ 4214905 (+)
XLOC_025002 NA non-coding downstream 563662 4237836 ~ 4294925 (+)
XLOC_025004 CR790363.1 non-coding downstream 595180 4269354 ~ 4270546 (+)
XLOC_025005 NA non-coding downstream 622177 4296351 ~ 4300461 (+)
XLOC_025010 NA non-coding downstream 1108689 4782863 ~ 4785568 (+)
XLOC_024970 NA non-coding upstream 355438 2570435 ~ 3314196 (+)

Expression

Expression of XLOC_024992 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Expression of XLOC_024992 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network