LOC110528500 (LOC106583615)


Basic Information

Item Value
gene id LOC110528500
gene name LOC106583615
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76047048 ~ 76060389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610603.2
GTTGTTGTTCTACACACGGGTTGAGGAGATGGGAAACTGGAGGTGAGGAATTCACCACAGAGGCACAGGAACGAGACAGAGCTTTCTGACTGACTGGGAGTAAAGCCAAACCTATGGATCTTCAACAGTTTGCAGTTTAGAAGCGTGAAGCGTATCACTCATCGTCCTTCACTGGAGGAAGAAGACGAAACTTCTAAACCTGTGTGTCTCCACCAGAACTTCCCACGCGGCTGTCTGAAGAAGAgaagtagagggaaagagagagaggaacgaaGAGCAAAAACCAGCCTGCCTTGGAAAGGGAAGAAGGACGGTGTCCTGAGAGGGAGGTGGCTATGCGTGAGGAGGTTTCCTGTGCCAACTCCCCTGAAGGGGGGCTGGGGGCCAGCGAGGAGGAGCTGGAGAGGGGCTCCAAGAAGAGTGGGCCAACAGGGGGGCGAAAGCGGGTGCCGTACCCCAAGAAGGACAGTTTGGGTCGGGCCGAGGAGAGGGCCGTGGTCAGCGGGAGCCCCAACTGCCTTGTTCCGTCAGGGCCAAAGCGGCAGAAGAAGCAACAGAGCTCCCCCACGTCGGTGGTGTGTGTGGCCCCATCCGTGCTGAGCTCCAGCGGCCTTGGTTTGGGCCCGGGCGGCGAGCCCTTCGAGGACCTGCACACTCAGCGAGTGATCGCCAACGTTCGCGAGCGCCAGCGCACGCAGTCACTGAACGACGCCTTTGCCTCGCTGCGTAAGATCATCCCCACTCTGCCCTCCGACAAACTTAGCAAGATACAGATCCTGAAACTGGCGTCACGCTACATCGACTTCCTGTACCAGGTGCTGCAGAGTGATGAGATGGACGCCAAGCTGGCTAGCTGCAACTACCTAGCCCACGAACGCCTCAGCTACGCCTTTTCCGTCTGGAGGATGGAGGGTGCCTGGGCAATGTCTGCCAGCCACTAGTgtcccctctccatcctccatcctgcTCTGCCCGTCCTGCTCTGTCTTAACCTTACTTTCTCTTACTTCCTTCTTGTACTGCCTAACCCCACCATCCCTGGCCTCCCCTAACCCACTATCTCTGTACCCCCTAACCCCACCATCCCTGGCCTCCCCTAACCCACTATCTCTGTACCCCCTAACCCCACCATCCCTGGCCTCCCCTAACCCACTATCTATGTACCCCCTAACCTCACCATCACTGGCCTCCCCTAACCCACTATCTCTGTACCCCCTAACCCCACCATCCCTGGCCTCCCCTAACCCACCATCTCTGTACCCCCTAACCCCACCATCCCTGGCCTCCCATAACCCACTATCTATgtaccccctaaccctaccaatCCTGGCCTCCCCTAACCCACTCTCTCTGTACCCTGTAACACAACCAACCATGGCCTCCCTTAAGCCACTATCTCTGTACCCTGTAACCTCACCATCCAAGGCCTCCCTTAAGCCACTATCTCTGTACCCCCTAACCCCACCATCCCTGGCCTCCCCTAACCCACCATCTCTGTACCCCCTAACCCCACCATCCCTGGCCTCCCATAACCCACTATCTATgtaccccctaaccctaccaatCCTGGCCTCCCCTAACCCACTCTCTCTGTACCCTGTAACACAACCAACCATGGCCTCCCTTAAGCCACTATCTCTGTACCCTGTAACCTCACCATCCAAGGCCTCCCTTAAGCCACTATCTCTGGCCCTCCTTTAAGCCAAAACACACTGTTTCCTCCTAAcccactacctccctctcttcaaTATTCTCTATTCTCTACTGTTCTTCAAACTGTTCTTTGCTTACCCTCTCATTCCCCTAATCGCCCACTgctccatcactcaccttacccaCTGCCCCAACACTCACCTTACCCACTGCCCCACCACTCACCTTACCCACTGCCCCAACACTCAACTTAACCACTGCCCCATCACTCCCACTGTACCCGTTCACCCTTCGAGCTttgcccccccaaccccccttTCCACCTAAAATGCCCCTGTATGCCGCCTAACAATTTAGCCCCAACTCCACAACTCTACGGTACACCTCTGCAGGACAGACATCTAACGAATGGACTCCTCTTTACCTCTAAAAAGGTCTGTCGTGTCCAtcctcccctgcataccccatcTCTCCTTCTTCGGAAGCCCTGGCCCACAGACATGGGCATTGGAGCGAACACAGGCATTGATTTAAGGACAGATATCCAGTCGACTCTCCTTTTgcagcctgacagacagacagtattaaCATGCagcctgacagagagacagaccgttTTATAATGCTCTATTACAGTATGTGACTGTCACTGAGGCATGACGAAGATCCTCAATTTATACGCCACTTCAAAGACTCCACAGAGGAAGATTCTTTGACAACTGAGATGACTTACGCTCATGATAATTACGATAATGGCCATAATAATGACGCCAAAGGGATGGATAGCTGGTGGTCCCAGCCCAATGAATGTTTACAGCAAAGATGCTAATAAGCTAATAATTGTAGGCTCTTCCACCTCCATTTGATGGGTAGGAAAAGTCACAGAAGCCTGCCATGTTTCCAACAGTTATATAAATGTATCTGATTGATTTGTCTGTTGCCTGTGTTCATGTATTTCTCTGTTTGCATTATGTCCCTTCATAGTGAGTGGACTTAGCATGTGCATATGCTTTTTGCTTATtcataaaggttacattttacaTTACAATGACTTTATATCAGAGTAAGTAATAAGCGATAAGCTATGCTGGCTCCCTACAACACATGACTACAGTAGTACACACAGTTTTGTAGCATGCACAGACTATGGTTAGATGAGACATAGTGGATAGATTCCATTAAACCTAAGGTCTGTGATAGATTAAGTATGAAAACTTAACATACTAAATAACTACGTGGTAATACAGTAGGATCAGAGTAACATATTACATATTATTTGGACACTCTTAATTAAAGTAAAGATACAATTAGGAGTGACATTGTACATTGTTGTATATACAAGTAACATTGTACTTATAGTTTTAAGTACCATTGTACTTATAGTTTTAAGTAGCAGTGTAGTacttgtaaattaaagataaaagtATAGTTTGAATATTGTAAGTTTAGTAATTCATTGGAATTTCTCTTTAAGATACCGTTAAGGAAATACTTCAATATGCTATCAGTAATTTGAGAGTGTAATGAAAATTGTAAACTGTACTTTTTTTTACAATGTGATAAATTCAGATTTTGTTGCTACTGGGTAATGGTAGGTAGTGGGAATATCTGATATACTGTCTCCAGAAAATGTAGTTGGTTAATATGTTTTATCCTCGTGCTCAGATGTAGTTCTTTTGGCAGATTGTTTGTCACCAGCTTTTCATTACATGAGCTCCTGTGGATAATAATAAAAACAGTTTTGGTAAAATA

Function

NR:

description
twist-related protein 2-like

GO: NA

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610603.2 True 3405 mRNA 0.48 2 76047048 76060389

Neighbor

gene id symbol gene type direction distance location
trnaq-uug-2 NA coding downstream 339803 75707174 ~ 75707245 (-)
LOC110528491 LOC106583605 coding downstream 504541 75530377 ~ 75542507 (-)
LOC110528490 LOC106583604 coding downstream 555666 75485309 ~ 75491382 (-)
LOC110527148 LOC106583596 coding downstream 654389 75391704 ~ 75392659 (-)
LOC110528489 LOC106583603 coding downstream 732169 75276781 ~ 75314879 (-)
LOC110528501 LOC106565236 coding upstream 8686 76069075 ~ 76085739 (-)
LOC110528502 LOC106565237 coding upstream 36774 76097163 ~ 76167318 (-)
LOC110528503 LOC106583643 coding upstream 118164 76178553 ~ 76192151 (-)
LOC110528506 LOC106583640 coding upstream 207261 76267650 ~ 76279500 (-)
LOC110528507 LOC106583638 coding upstream 222860 76283249 ~ 76328059 (-)
G649215 NA non-coding downstream 861 76044214 ~ 76046187 (-)
G649202 NA non-coding downstream 70513 75976335 ~ 75976535 (-)
G649198 NA non-coding downstream 74747 75972056 ~ 75972301 (-)
G649197 NA non-coding downstream 76336 75970213 ~ 75970712 (-)
G649193 NA non-coding downstream 88520 75957589 ~ 75958528 (-)
G649292 NA non-coding upstream 66251 76126640 ~ 76127941 (-)
G649318 NA non-coding upstream 115573 76175962 ~ 76176181 (-)
G649320 NA non-coding upstream 116973 76177362 ~ 76177713 (-)
G649325 NA non-coding upstream 148516 76208905 ~ 76225014 (-)
G649025 NA other downstream 426111 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 939132 75106897 ~ 75107924 (-)
G646073 NA other downstream 2235591 73810902 ~ 73811457 (-)
G645928 NA other downstream 2352123 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 2836624 73207930 ~ 73210424 (-)
G649327 LOC106583642 other upstream 154312 76214701 ~ 76220931 (-)
G649684 LOC100136508 other upstream 953039 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 1322278 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 1968855 78029244 ~ 78029753 (-)
G650763 NA other upstream 1982910 78043299 ~ 78046469 (-)

Expression


Co-expression Network