LOC110528501 (LOC106565236)


Basic Information

Item Value
gene id LOC110528501
gene name LOC106565236
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76069075 ~ 76085739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610604.2
ACAGCGTCTATTCTGTCGGAAACGCAGAAGAAGAATAACAACAACCGTTTTTGGCTTACAAATAGGGCACATCGttcgtgttgtgttgttgtgtagacttTTATATTAACTATGTCGATTTAGCTCACATTTGCAGCAACTGTCGTATTAGCTACTGTCGTTCGGACGTTTTTATCCCAGTACACTACCATGCAGCTGTTAAACTAGCTTGAGTCGTGGAGTACAGAAGCGAGTTTCTCAAAGCAAAGCACTTGTTTTTAAACGTTGACGGTATTGTTATTTAAGTCTTCTTCTCGTGTGTCATCCGTGCCCAATGGGGTTCAATAAGACGTACATCAGTGTGGGGTATGCCTCTTTGGGCATGCTTATAGGATTCTCTGCGTTTCTCGTGTGGAACATCGCGTACAAACAATCATGGACAGCTGCAATGGGAGGATTATCAGgtgTGCTGGCTTTCTGGGCCCTCATCACCCACATCATGTACTTGCAGGACTACTGGCGCACCTGGCTGAAGGGCCTCAAGTTCTTCCTTTTCATGGGTGTCTTCTTTGCCCTTCTGGCAGTGGTGGCCTTCATCACCTTTCTCTCCCTCGCCATCACCAACAAAGAGTCACTGACCGACCCGAGGAGCCTGTTCCTGTCGGGCGTGTGGAGTTTAATGACCCTGAAGTGGTCCATCCTGCTGGCCCTCTACTCCCACCGCTACCGCAAAGAGTTTGCTGACATCAGCATCCTCAGTGACTTTTGATAAGGGCCATTGAACCCCTCTAGTGAGGGAATGAGTACCATGATCTCCACCTATGCCCGCGCCTCCTCGTTTAGGTTACCCCCTCTTTTCCTATGTCTGTGAAATCAAATCAACGTTAATTTGTCACGTGCACAGGATACAACcggtgtaaacagtacagtgaaatgcttacctgcaAGCTCTTCCTTAACAATGTAGTATTCAATATCAAAGAGAAAGAAATAGAACATCCACAATAGAATCTTAAAAAGCTCACAGAAACAGGGAATGCTCAGCGCCTGCTAGCCAGTCTATCCACAAGTTCATCCCTATTTTATACTGTTTATGAATTTTACTGTCTTCATATACATATGTATGTGACACTTGTCTGTGTTCCTGTTGTATGTCCTCTAAAGTTGTTTTAGTCAtgccaatatctctctctttatgaGATTAGgggttcttatttgattaatttgTATCTAACCCTTGATGATCATGTACATCTACCTATGATGTTTTTTTACTAtctaataaagagagagatattggcaTGACTAAAACAACTTTAGAGGACATACAACAGGAACACAGACAAGTGTCACATACATATGTATATGAAGACAGTAAAATTCATAAACAGTATAAAATAGGGATGAACTTGTGGATAGACTGGCTAGCAGGcgctgaatatatatatatatatattcatattcctTCTCTGATTTATTTGTGGTTATGATACAGAATTGACTTCCATTATCTTGCCACAAGGGGGCGTCACTCCATCAAATGCGTTGGCTgttggaaaatgtttgtttttagatggaaaatgtttgtttttagaTGTAAGCCTTTCTCAGAATTCATCTCGGTGTAGTATAACTGTACTCTACCTGCACAAATCATAGAACATCAATTCTAGACAACAATAGGACACATCACAGACATGTTTGGGAAATCTAAGTAGTTGGATTTTAGTATGACTGTTCTGTGTTATCTGTTTTTGCACTTTGCGCTTGGGTTCATAAAAACTTACTGTCACCTGCAGTAATGTGACGAAGCCACTACATTTAGTTTGTTGGGTCTCAACACTATTTGGAAACACTTGACTTAATGCTGGCAGGTATAATGCATTTTTTATGCAGCTATAATGCTTTCTAAGACTTATCATAAGACTTGTTTGACCCGccctttataatgtcttatagCGTTATACCTGCCAGTGTTAGCCACTATCACAGCATCCCACCACCACTGTATAAAATTATTATATGAAGAAAGATTGTACTACCATCCCATAATGTAAGAACAACTGCTTTTATAACAGTAAGCAAATTAATTTCAAATGTCTCTCTTTTTTTTAGTACTCATCGTATTTGAATGGAGATATTTCGTAGCATTTTTATTATTGCCATGATGGGAAGTTGTCAACAAAGTGAGCGAGGACCGAACCAATGATGTCACAAGTGTGAGAGGGGACCATTGGGGCTTAATAATATGAGCCTTTGACCAATTTTATTCCGATAAACGCTTTGACTCCCAACACACGGACCCGAGTCCGAAAAGGTACCCTactccctagatagtgcactacagaCGGACCAAGGACTAATTGCGTGAATGCTTCAGTAATCCTAAACATTTGTTTGTTGCTTCTCCGATCCAAAAATATTGGTGGTCATCATACTGCTGCCTGTGGAGATGAATTTGATCCTGTTCTTCCTTTTTAAAAGTCTGTTTCTATGTGAGCTACCACATCTAGCATATTGTAATAATGAAACATGAAATGATGTATATCCACTTGCGTGTGTGTAGGAATGTATGTCTGTTGTacaggtatgtatgtatgtatgtatgtatgtatgtgagaGCCATATTAATAAAATATAATTGTAGGACAA
>TU737820
tatatatatatattcatattcctTCTCTGATTTATTTGTGGTTATGATACAGAATTGACTTCCATTATCTTGCCACAAGGGGGCGTCACTCCATCAAATGCGTTGGCTgttggaaaatgtttgtttttagatggaaaatgtttgtttttagaTGTAAGCCTTTCTCAGAATTCATCTCGGTGTAGTATAACTGTACTCTACCTGCACAAATCATAGAACATCAATTCTAGACAACAATAGGACACATCACAGACATGTTTGGGAAATCTAAGTAGTTGGATTTTAGTATGACTGTTCTGTGTTATCTGTTTTTGCACTTTGCGCTTGGGTTCATAAAAACTTACTGTCACCTGCAGTAATGTGACGAAGCCACTACATTTAGTTTGTTGGGTCTCAACACTATTTGGAAACACTTGACTTAATGCTGGCAGGTATAATGCATTTTTTATGCAGCTATAATGCTTTCTAAGACTTATCATAAGACTTGTTTGACCCGccctttataatgtcttatagCGTTATACCTGCCAGTGTTAGCCACTATCACAGCATCCCACCACCACTGTATAAAATTATTATATGAAGAAAGATTGTACTACCATCCCATAATGTAAGAACAACTGCTTTTATAACAGTAAGCAAATTAATTTCAAATGTCTCTCTTTTTTTTAGTACTCATCGTATTTGAATGGAGATATTTCGTAGCATTTTTATTATTGCCATGATGGGAAGTTGTCAACAAAGTGAGCGAGGACCGAACCAATGATGTCACAAGTGTGAGAGGGGACCATTGGGGCTTAATAATATGAGCCTTTGACCAATTTTATTCCGATAAACGCTTTGACTCCCAACACACGGACCCGAGTCCGAAAAGGTACCCTactccctagatagtgcactacagaCGGACCAAGGACTAATTGCGTGAATGCTTCAGTAATCCTAAACATTTGTTTGTTGCTTCTCCGATCCAAAAATATTGGTGGTCATCATACTGCTGCCTGTGGAGATGAATTTGATCCTGTTCTTCCTTTTTAAAAGTCTGTTTCTATGTGAGCTACCACATCTAGCATATTGTAATAATGAAACATGAAATGATGTATATCCACTTGCGTGTGTGTAGGAATGTATGTCTGTTGTacaggtatgtatgtgagaGCCATATTAATAAAATATAATTGTAGG
>TU737821
tatatatatatattcatattcctTCTCTGATTTATTTGTGGTTATGATACAGAATTGACTTCCATTATCTTGCCACAAGGGGGCGTCACTCCATCAAATGCGTTGGCTgttggaaaatgtttgtttttagatggaaaatgtttgtttttagaTGTAAGCCTTTCTCAGAATTCATCTCGGTGTAGTATAACTGTACTCTACCTGCACAAATCATAGAACATCAATTCTAGACAACAATAGGACACATCACAGACATGTTTGGGAAATCTAAGTAGTTGGATTTTAGTATGACTGTTCTGTGTTATCTGTTTTTGCACTTTGCGCTTGGGTTCATAAAAACTTACTGTCACCTGCAGTAATGTGACGAAGCCACTACATTTAGTTTGTTGGGTCTCAACACTATTTGGAAACACTTGACTTAATGCTGGCAGGTATAATGCATTTTTTATGCAGCTATAATGCTTTCTAAGACTTATCATAAGACTTGTTTGACCCGccctttataatgtcttatagCGTTATACCTGCCAGTGTTAGCCACTATCACAGCATCCCACCACCACTGTATAAAATTATTATATGAAGAAAGATTGTACTACCATCCCATAATGTAAGAACAACTGCTTTTATAACAGTAAGCAAATTAATTTCAAATGTCTCTCTTTTTTTTAGTACTCATCGTATTTGAATGGAGATATTTCGTAGCATTTTTATTATTGCCATGATGGGAAGTTGTCAACAAAGTGAGCGAGGACCGAACCAATGATGTCACAAGTGTGAGAGGGGACCATTGGGGCTTAATAATATGAGCCTTTGACCAATTTTATTCCGATAAACGCTTTGACTCCCAACACACGGACCCGAGTCCGAAAAGGTACCCTactccctagatagtgcactacagaCGGACCAAGGACTAATTGCGTGAATGCTTCAGTAATCCTAAACATTTGTTTGTTGCTTCTCCGATCCAAAAATATTGGTGGTCATCATACTGCTGCCTGTGGAGATGAATTTGATCCTGTTCTTCCTTTTTAAAAGTCTGTTTCTATGTGAGCTACCACATCTAGCATATTGTAATAATGAAACTTGCGTGTGTGTAGGAATGTATGTCTGTTGTacaggtatgtatgtgagaGCCATATTAATAAAATATAATTGTAGG

Function

GO:

id name namespace
GO:0048821 erythrocyte development biological_process
GO:0015886 heme transport biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015232 heme transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610604.2 False 2631 mRNA 0.40 3 76069075 76085739
TU737820 False 1185 lncRNA 0.37 2 76069079 76070283
TU737821 True 1165 lncRNA 0.37 3 76069079 76070283

Neighbor

gene id symbol gene type direction distance location
LOC110528500 LOC106583615 coding downstream 8686 76047048 ~ 76060389 (-)
trnaq-uug-2 NA coding downstream 361830 75707174 ~ 75707245 (-)
LOC110528491 LOC106583605 coding downstream 526568 75530377 ~ 75542507 (-)
LOC110528490 LOC106583604 coding downstream 577693 75485309 ~ 75491382 (-)
LOC110527148 LOC106583596 coding downstream 676416 75391704 ~ 75392659 (-)
LOC110528502 LOC106565237 coding upstream 11424 76097163 ~ 76167318 (-)
LOC110528503 LOC106583643 coding upstream 92814 76178553 ~ 76192151 (-)
LOC110528506 LOC106583640 coding upstream 181911 76267650 ~ 76279500 (-)
LOC110528507 LOC106583638 coding upstream 197510 76283249 ~ 76328059 (-)
LOC118965404 NA coding upstream 201395 76287134 ~ 76287188 (-)
G649215 NA non-coding downstream 22888 76044214 ~ 76046187 (-)
G649202 NA non-coding downstream 92540 75976335 ~ 75976535 (-)
G649198 NA non-coding downstream 96774 75972056 ~ 75972301 (-)
G649197 NA non-coding downstream 98363 75970213 ~ 75970712 (-)
G649193 NA non-coding downstream 110547 75957589 ~ 75958528 (-)
G649292 NA non-coding upstream 40901 76126640 ~ 76127941 (-)
G649318 NA non-coding upstream 90223 76175962 ~ 76176181 (-)
G649320 NA non-coding upstream 91623 76177362 ~ 76177713 (-)
G649325 NA non-coding upstream 123166 76208905 ~ 76225014 (-)
G649337 NA non-coding upstream 142006 76227745 ~ 76228052 (-)
G649025 NA other downstream 448138 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 961159 75106897 ~ 75107924 (-)
G646073 NA other downstream 2257618 73810902 ~ 73811457 (-)
G645928 NA other downstream 2374150 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 2858651 73207930 ~ 73210424 (-)
G649327 LOC106583642 other upstream 128962 76214701 ~ 76220931 (-)
G649684 LOC100136508 other upstream 927689 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 1296928 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 1943505 78029244 ~ 78029753 (-)
G650763 NA other upstream 1957560 78043299 ~ 78046469 (-)

Expression


Co-expression Network