LOC110528502 (LOC106565237)


Basic Information

Item Value
gene id LOC110528502
gene name LOC106565237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76097163 ~ 76167318 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610605.2
TCTATGAGTCCTACACTGCTAGTATGAGAGGGAGATGCAGAGTGAAACGGGATCCTATTCCATTCACAATTAATTCATTTATATGTTGGAATATGCATTACCAAAATATAAGGCAGGCGTTTCACACCTCATAGCAGGTTAATTATTGTCTTGCGATTCGACGCACAAAAGAGATGGGCACTGGACGGCGATTTTCAGCAATTTCAGTCAACTCAATCCTGCGAAATCCAGGTTATTGCGCCCGTTTCGTTGTAATTGCAGTTGTTTTTATCCAGCTGTGCGCAACGTTTAACTTAGAAACAGAAAACCGGATTGTCTACTCTGGACCTAAGGGGTCTTTTTTCGGTTATTCCGTGGATTTTTTCTACAATAATGCATCTAGTTTCAGTATTCTGATTGGTGCTCCCAAAGCTAACACCAGCCAAACGAACATCATCGAAGGTGGATCTGTGTACTTGTGTCCCTGGAGCCAGGACCAATCGGATTGCAGTGTTGTCAATTTTGACAATGAAGGGGATCGCAGTTTCCACGTCAACGACGTCGACGTCCAGGTCGAGTTCAAGTCCCATCAGTGGTTTGGGGCTACGGTGCGTTCCCATGGCAACACTGTCCTGGCTTGTGCCCCAAGATATTACTGGAGAACGGAACACGATGCCCCCTTCTCGGATGCCACAGGAACCTGCTACCTCTCCGTGGACAACctcaagacatttgtggagtacGCCCCCTGTCGCACAGAGAGACATGGTCCTGCAGGACAGGGCTACTGTCAGGGTGGGTTCAGTGCTGACTTCACCAAGGATGGGAAGGTTGTTCTCGGAGGACCAGGAAGCTTTTACTGGCAAGGTCAACTAGTCTCTGCCACCACAGAGGAAATCGTCAAGGCCTACTTCCCATCCTACTTCCTGCTCTCTGTTACTGGGCAGATCCAGACTCGGCAGGTGCAGGGGAGCTATGACGACAGCTACCTCGGTTACTCTGTTGCCGGCGGGGAGTTCAGTGGAGATGATATTGAAGACTTCATCACCGGAGTTCCCAAAGGACTCATGCTGCATGGTTTAGTGTCATTACTCAATGGGACAGATCTGAAATCCATGCTGAACCTAACTGGAGAACAGATGGGTTCCTATTTCGGCTATGCAGTGGCAGCCACCGACATCAACAACGATGGTCTGGATGACCTGGTGGTGGGCGCTCCCATGTTCATGCAGAGGGGGTCTGACGGACTGCGTTGGGAGGAGGTGGGCCGTGTCTATGTGTACCTACAGCAGCGTCCCTTGTTGTTTGAGCCCAGCCTGCCCCCCTTGGGAGGTAGTCAGGCCTTCGGGAGGTTCGGAAGCTCCCTGGCCCCGCTGGGAGACCTCAACCAGGACGGCTTCAACGATATTGCAATTGGCTGTCCCTTTGGAGGAGACGACCAACAGGGATTGGTCCTCATCTATAACGGGCATGCCAGTGGGCTGAAGGACACGCCCACTCAGGCTCTAGCTGGCCAATGGGCCTCTGGCACCTTTCCTGCCAGTTTTGGCTATGCCCTCCGCGGAGAGAAAGATCTGGACCAGAATGGGTACCCAGATCTCATCGTAGGTGCTTTTGGGGCTGACAAGGCTGTTCTGTACAGGGCTCGGCCTATTGTCAACGCCAGTGCTTCTCTTACTGTGCAACCTACCATGATCAACTCAGAGGAGAAGAGTTGTATGGTGTCCAATGGGAACAAGACTATCTCTGTGTCTTGtGTCAACCTCAGTTTCTGCCTCTCGGCCAATGGGAAGCACCTCCCTGCTGATCTAGttTTTATGGTGGAGGTGCAGTTGGACCAtctggagcagaaacagagagagtcatccgtgaggagaactctgttcctAGATAGCCATCAGCCCAGCCTGCTGGAGACCATCACCATGGCCAACGGAGGACCAACGTGTCACGACACCCGCATCTACCTGCGCAGTGAAGGGGAGTTTCGGGATAAACTGTCCCCCATTTACATCACCCTCAACTTTAGCCTGGATCCTCTCGCTCAACTGGACCTCCATGGCCTAAAACCCATTCTAAACTACCAGACAACACATATTATAAAGCAGAAGGCCCAAATTCAGCTGGACTGTGGGGAGGACAACATCTGTGTTCCTGACCTCAAACTGGCCGTTTATGGCGATAGGACAGAGGTGTATCTTGGCGACGAGAACTCCCTGACCCTGACCTTCAATGCCAGGAACGAGGGAGAGGGCGGGGCCTACGAGGCAGAGCTTTACGTGGTACTGCCCGCGGAGGCTGACTACAGTGGTATTGCCCGCAACAATGCGAGTCTGACTCAGCTGACCTGTAGCTACGAGGCAGAGAATCAGACCCGCTCTCTGGTCTGTGACCTGGGCAACCCTATGAAGTCTGGGACAAGTTTGTGGGCAGGCCTCCGCTTCACTGTGCCTCGACTGAAGGACACTCACAATACAGTACAGTTTGAGCTCCAGATACGCAGTAAAAATGAGAATAAATCCCAGAGTGATGATGAGCTCTTTCATCTGGAGGtggctgtggttgctgatgttaTCCTACAGGGCGTTTCTCGTCCGGACAagctcctcttccctcccccgaACTGGAGGATGAGCCACAGCCTACAAGAGGAGCAGGATGTTGGGCCTGAGATCCAGCATGTGTACGAGttggTGAACAACGGGCCCAGtatgatcagtcagtcagtgctgGAGCTGCGCTGCCCTCTGAAATCTCAGGGTCACGACCTTTTGTACCCTCTGGAGGTCATCACTCAGGGACCACTCGACTGCAGCTCCAACCACACCCTCAATGCACTGAAGCTCAAGCTCCAGCCTCCTACAACAGAGCAGCCACCCTCACCACTGACAGCCAGCCCTGAACACCACGTCCAGAGGAGAGAGGTCTACAGGGATCCTCTGGATGAACAAGGAAACCTGTCGTGTTCTACCGCTGAGTGCTGGAGGCTGCGCTGTCATGTGGGGTTACTGGAGAGAGGAAACAGTGTCATTCTGACCGTCCGCTCACGCATCTGGCCTGAGGCCTTCCTTGAGAGGGCATACAAGCAGTATGTGCTGGAGTGTTCTGTGGAGTACGGAGTCGAGAAGATGCCCTATTCCATCGCTCCCAAACTCAAACCCAGTGGATCCAAGAAGGTCCTGACTCCAGTGATGTGGAACAAGCCAGACAGCCAGTACATGGTACCACTGTGGATCATCATTCTAGCCATACTGGCTGGATTGCTGCTGCTCACACTGGTCATATATGTACTCTACAAGTTGGGCTTCTTCAAACGATCCAATCTTTATGGTACAGCCATGGAGAAAGCTCAACTCAAACCACAGGCTTCTTCTGAGGCCTAAACGATGGACCATCCCAGACGTCGTTTTGAAAACTGGAAAGGCATTGCATAGGACTTAACTCTAAACAAACCACAGAATACTCACGTATGAAAGGAAGTCCATCCATAGGATGAGTACCACTGGGACCTCAATGGCATTCAGCCTTCTACTGCACTGAAATGCTGAAGCAGGCAAACCCACAATGAGATGTCTGGGCTGCATTATAATAGAGCTATCCTGAAAACGGGCAAATTTTGCGTACGGTTGCATAGACAATAATGTCTTTAAAATCCAGCTTTTTGCTTTTATGTGGGGAAATATCCATCAAAGTAGCAACCCTGGCTGAGGCAATGGAGCATTTATTCAATTGTTTGAGTCACCAAATATGTCTTTACCTATGAGGTGAGAATGTTGGGGAAGGTGTGCTATTGAACGATAACAGCCAAAGTCCTCTGAATGCTAGGAGCAGAAATAGACTCATAAAGTATATCAGTCAATTTAACATTTGTTTTCTCAATGTCACAAAAACACATTGATGCTGTTTGCTACTCCAACTGGCCTTACTTTGTCCCGAAATAGACCATCCCTGACCCTGATGGCAAGTTAACATTGCCCACCGTCTGCAAACAGGTGTTACTACTACTAATGGGTGTGTGTCGACCATCAGTTAGTCAGGGTCATTGCGCTGTTGTACAGCTGGCAGTATATCCCCATATCTGCCAACACAAGTGCGATTTCAGATTTTCTACAGTGTAGTGCTGCCTCACAGCCACCAGTTTTACGATGAGGGCTTGCTAGCTGGAGAGAGGTCCGAGATTCTTTAAGAGGAAACGCACCTGGCCTTTCTGCTTTAACATACGATCTGTCATGTTCTTTCTGATCCATTTTGTTACTATGCAACTTGACCACATTTGTAAATACAGTGCTAGAAGCTTTTAGATAATTATTACAGTTGAAGGATATAACCTCACATCCCCTAATCACTATTTATAACACGTTTTTGTGCATTCAACCAAATGAATTTGATCATACTTAAGGATATTTTTTCTTTGTTATGAGCGGATGTATATTTCAAAGTAGTACATTTATAATTTTGTGAAGAGTATATCAAACTGCATTGGAAATATGTTTTTCTGTGAAATAATTCCCTCCCATGTTGGGAGCTGCCATGGCtttttcatgttgttttgctGTTGACGACTAAAATTAAATTACCATTTTATTTTACTCTATCCAAATACAGATGCCATATTTAATTTGTTGCAGTAATTTTtatgcacagcaggaaatgcaaaaggcttctaaagtttgtaatttccacttttaaTAACGTAATTTGCCCTAActgaaaatgtatcaacccctacaaaaaaaatgcccttaattataatccacataattatAATTAATTTCCTGTTGCTGGAATTGGAATAGTTGTTGATAATTTTGCAAATGCTAttgtatataggcctaaatagcatAATTGATAATATATGAGTGACAACATTAAACCTAACCTTTGGAATGACTTTGCTAGTAACAGTGACTCTATTTAGCTTTAAAGTGGAGAACTTtcaacaatcattctcacggGAGTGTaatgcctgctcccgctcttcccctcgggggcgccaggctgccctgcattacgcactcctgccgccatcattacgcacacctgccttccctcgtcacagGCATCAGCGAATTATTGGACTtccctggactcaatcacctgtttattacctctcctatatgtgtcagttccccagctctgttcaaCACTGCTGCATTGATTGTCTTACGTCTGTGTTTTGCCCAGTTCTGACGCTGTTCCTATTCTGTTTTCATGTCTGTTCCGATTAAATGTTGACTCCTCGTACCTGCTTCTCTTCTCCAGTGTCATTCCTAACAGCAGCCATCAAATTAAGCATCTGGGACTGCTGGCGGTTCGGTTGGTGGTGACGTCGGGTCCAGGGGCTGCTGCCGATGGAACTGGGGGTTCCTTAGCTGGATCGTCGGGCTTCCATGCCCTAGCCGACTCGAGAGGTTCCCTTGCCCCAGTTGGCTCGGAAGATGACCATCCCACGTCaggcctcagccggatcgtcaggTTTTTACGCACAGCCAGCTCCTCAGGCTGCTACATCTCAGCTGGATTatcgggctcccacgcctcagcagGATCAACAGGCTTTCACGCCTCAGCTGGATCGTCAGGCTCCTATGCCTTACCCGGCTCTCCAGACTCCCACGCCTCTGTCGGTTCGACGGTATATTACACCCAGTCGGCTTGTCCAGCGCCGTGCCTCGGCCGGCCCGtcaggctcgcccaggtgggacgCGGGGTGGAGCCCCTGGGGGCTACTGCTCTTCCCCCCTGAAGTTCAATGGCGCCAGTCTGCCCTGCATtacacactcctgccaccatcattacacacacctgccttccctcgtcacagGCATCAGCGAACTATTGGACTcccctggactcaatcacctgtttattacctcccctatatgtgtcagttccccagctctttTCCCGCTGCTGCATTGATTGTCTTACGTCTGTGTTTTACCCagttctgacgctgttcctgtcctgttttcATGTCTGTTCCGATTAAATGTTGACTCCTCGTA

Function

NR:

description
integrin alpha-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610605.2 True 5987 mRNA 0.49 30 76097163 76167318

Neighbor

gene id symbol gene type direction distance location
LOC110528501 LOC106565236 coding downstream 11424 76069075 ~ 76085739 (-)
LOC110528500 LOC106583615 coding downstream 36774 76047048 ~ 76060389 (-)
trnaq-uug-2 NA coding downstream 389918 75707174 ~ 75707245 (-)
LOC110528491 LOC106583605 coding downstream 554656 75530377 ~ 75542507 (-)
LOC110528490 LOC106583604 coding downstream 605781 75485309 ~ 75491382 (-)
LOC110528503 LOC106583643 coding upstream 11235 76178553 ~ 76192151 (-)
LOC110528506 LOC106583640 coding upstream 100332 76267650 ~ 76279500 (-)
LOC110528507 LOC106583638 coding upstream 115931 76283249 ~ 76328059 (-)
LOC118965404 NA coding upstream 119816 76287134 ~ 76287188 (-)
LOC110528509 LOC106583637 coding upstream 246962 76414280 ~ 76428175 (-)
G649215 NA non-coding downstream 50976 76044214 ~ 76046187 (-)
G649202 NA non-coding downstream 120628 75976335 ~ 75976535 (-)
G649198 NA non-coding downstream 124862 75972056 ~ 75972301 (-)
G649197 NA non-coding downstream 126451 75970213 ~ 75970712 (-)
G649318 NA non-coding upstream 8644 76175962 ~ 76176181 (-)
G649320 NA non-coding upstream 10044 76177362 ~ 76177713 (-)
G649325 NA non-coding upstream 41587 76208905 ~ 76225014 (-)
G649337 NA non-coding upstream 60427 76227745 ~ 76228052 (-)
G649399 NA non-coding upstream 162696 76330014 ~ 76330342 (-)
G649025 NA other downstream 476226 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 989247 75106897 ~ 75107924 (-)
G646073 NA other downstream 2285706 73810902 ~ 73811457 (-)
G645928 NA other downstream 2402238 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 2886739 73207930 ~ 73210424 (-)
G649327 LOC106583642 other upstream 47383 76214701 ~ 76220931 (-)
G649684 LOC100136508 other upstream 846110 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 1215349 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 1861926 78029244 ~ 78029753 (-)
G650763 NA other upstream 1875981 78043299 ~ 78046469 (-)

Expression


Co-expression Network