LOC110528503 (LOC106583643)


Basic Information

Item Value
gene id LOC110528503
gene name LOC106583643
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76178553 ~ 76192151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610606.2
ACGTTTTTAGCTAATTTACCATGATGTCACCAGTGCTGCCTTCAGACGTTTTTACGTTATGGAATATTCAATTGGATGGAAACAGTGGTGTCCTGAACGTCCAGTTTAAAAACGGGGAGGGGTTGGGTTGTGGGTTAGAGAAGGATGTCAGCATGGCCTCTTCTCTTTTAAAACGTCACTCATTGCTTCAAACCACACCCATCAAACGGGAGGAAACATACCTCAAAGTCTGTTCAAGAACGTTTTGGGGGGTGGAAACGTGTCGTTCAGTACCAACCATTCAAGCGAACTGAACCCACCTCTAGATATAGAACAGGAATAGAACAACAAATTAACGTTTCGTATTTTTCAGGTGATTAATATATTCATCCTGCGAGCTACCTGTGTTTGGTTGCGCAAAAGTATTGCGTTTACTTGCTGATGACGGGATAAGCATGGTGTGAATCACGGAGTAACTCAACAAAGATATAAGCACAAGAGCAGCGGCTTAACAAGAGGAATCATACACATACCGGAGTGAGAAGACACGATGGCAGAGAACAAGATGGGGCCAAACattggggctggggctggaggtTTTGCCAAACTGGTACAAAAGTCATTGAATCGAGCTCAGGAGAAGGTCATGCAGAAGCTGGGTAAGAACATGGAGACAAAAGATGAACAGTTTGAGCAGTACTCCCAGAACCTTCTCAAACAACAGAATGATGGCGGCAGGCTATTTAAAGACGTCAAAGCATACTTCAGTGCAGTGAAAGTGATGCATGAGACTTCCAAGCGCCTGTCCCAGACGTTAAGAGATGTCTACGAACCTGACTGGCAGGGAGGAGAGGACCTATCTGTCATCATGGAGAGTGAGGACTTGCTGTGGAATGATTATGAAGAGAAACTAACAGACCAGATAGTTCGCACCATGGAGAATTACACTGGACAGTTTCATGAAGTCAAGGAACGAGTAGCCAAACGTGGTCGGAAGCTCGTAGACTACGATTCCTCACGCCACCACTTGGAGACGCTGCAGAATGCCAAGAAGAAAGACGATGCCAAAATCACCAAGGCAGAGGAGGAGTTCAACAAAGCCCAGAGTGTGTTTGAGGAAATCAACAAAGAGATGAGGGAGGAGCTTCCTGTTCTCTATCAAAGCCGGATTGGATGTTACGTGACCGTCTTTCAAAACATTTCCAACCTGAGGGACGTCTTCTATAAGGAAATGAGTGTGCTGAACCATGAGCTTTACAGCGTGATGAAGAAGCTGGAGACTCAGTATTCAGGAAAAGCTTTTATCATCAAGGGCCTTAACAGCACCAAGTCCAagaagagaaaatccctggtcatctcaGCGCCCATCCCCTGTAACACAGCCTTCCCCTCGGAACACACAGCTCTCCACGCATCCACAGCCCCGGAGAACGGCAAGGAGACCTGTACCCAGAGTATCCCTGAGGAGCCCGCTGCCATCTCAGGAGAGGCTGACGAGGGCACTGGCACAGCGGACCCCTGCGTCTTCACCTCCGTTCTCTCGGACGAGTTGAGCTCCAACGGCACCACTACACCCAACAGGCGGTCGGCGTGCGACAGCGACAACGGGGTCGGGAGTGACGTCGCTTCAGAGGGTCTGAGTGACCTCCAAGATGGCGGTGCTTTGGAAGAGCAGGGCCTTAGCCAATTGCAGGACTCCTCTGCCTTAGAAGAGCAGGTTCAAAGGTCAGAGGTGACCTCTGGAGGTGAGGTCATTACCAGTCAGAAGGCTGTGGCTGAGTCCACAGAGAGCAAAGTCCTATATGACACTGACCAGGCTAATCTTCCAGAGCATGGCAAAGCCAAGGCTCCACCGCGTCCTGCGCCACAACTTTCCTTACCCCACTCTGAGAAGCACTCCTTCCCCCCTGCAGAGGCCAGCCAAGTGGAGGTGGTggaagagaagggagaaagagcTTCCCAGGAGCTGCAGGCAGGTGACACCGAGAGCACTGGAAATGACTCGGACTCCCAGAATCCACCTGGTTTCATTTACAAGGGAGTGGCGCTCGAGGGTCACATTTCAGAAGACGGCACACTGCAGTATGACGTGGAAGATCTGATTCTTATCCTCGCCGACGCAgaggagaagCAGGAAGGCATGGCCAAGGTGGTGAGGGAGAAGACATGTATTGAGCAGGGAGATCTGCCAGAATGAGCCAATTTGTACCTGTCATTCCTGTCTTCCCCTCGAGCTGTGGTGACCCATTCAGTGTTCATGTGCTAGTCAGAACATTTccaacttgctaactggttgtcgTTATACACGTGCCGCGCTCAACCAGTGACCAAGTTGGAGTTCCGATTAGCACACCGGCACACACAATGGCAATGGACGGAGATGGTATGGGTGTGGAGGACTTCGtaagaagagaaagaggaaaaacAGGAACACAAGCCCTATTAATCACACGCTTCCATGTCTCAACTTGTTGGAAGAAAACGATGTGTCATACTTACCGAGAGAATGTTCTTTTGTTAACACATGTTTTTGATATGCAGTATTTTGGCCTTGTTTGTGTTAACATTGTGTAAGTCTCAACTGTGAAACGTATagaaaccatttttttttatattgatgCCATTGAAAGAGTTGTAGTTTAATAAAGTTATGTGAGAGAGGAGTGGTGTTGTTGAAATAGCAAAAAGAATAGCATTTTCACTGTTCTAATAGGTTGCATGGGTCTGCTTTAGCTTTACtgcttaagcaataaggcccgaggaggtgtggtatatggacaatataccacggctaagggctgtccgGATGCACggcgcaacgcagagtgcctggccACAGCCCTGaggtgtggtatattggccaaatatATGACAAACCgcctgaggtgccttattactattataaactggttaccaacgtaattcgAGCAGTAAGAATATTTTCTGTCATACCCGTTGTATACGGTCTGCTATACCACTGCTGAAAGCCAATGaacattcagggcttgaaccacccagtttctaATATTCCATATTCCCATGAGTAGTCAAGCCCCTGTGTatcacatgttacaacacaaGGTGGCGCTAGTGGTCTAACAAACTACAGAGATAACCCATTTTCACTTGAGGTGCTTTCccattctttttttgttgttgcagtgaTTGTGAATATTAGTGTCAACTTCGTGGCCGACCTTGAAACTTGGTGGGATAACCTCATT
>XM_021610607.2
ACGTTTTTAGCTAATTTACCATGATGTCACCAGTGCTGCCTTCAGACGTTTTTACGTTATGGAATATTCAATTGGATGGAAACAGTGGTGTCCTGAACGTCCAGTTTAAAAACGGGGAGGGGTTGGGTTGTGGGTTAGAGAAGGATGTCAGCATGGCCTCTTCTCTTTTAAAACGTCACTCATTGCTTCAAACCACACCCATCAAACGGGAGGAAACATACCTCAAAGTCTGTTCAAGAACGTTTTGGGGGGTGGAAACGTGTCGTTCAGTACCAACCATTCAAGCGAACTGAACCCACCTCTAGATATAGAACAGGAATAGAACAACAAATTAACGTTTCGTATTTTTCAGGTGATTAATATATTCATCCTGCGAGCTACCTGTGTTTGGTTGCGCAAAAGTATTGCGTTTACTTGCTGATGACGGGATAAGCATGGTGTGAATCACGGAGTAACTCAACAAAGATATAAGCACAAGAGCAGCGGCTTAACAAGAGGAATCATACACATACCGGAGTGAGAAGACACGATGGCAGAGAACAAGATGGGGCCAAACattggggctggggctggaggtTTTGCCAAACTGGTACAAAAGTCATTGAATCGAGCTCAGGAGAAGGTCATGCAGAAGCTGGGTAAGAACATGGAGACAAAAGATGAACAGTTTGAGCAGTACTCCCAGAACCTTCTCAAACAACAGAATGATGGCGGCAGGCTATTTAAAGACGTCAAAGCATACTTCAGTGCAGTGAAAGTGATGCATGAGACTTCCAAGCGCCTGTCCCAGACGTTAAGAGATGTCTACGAACCTGACTGGCAGGGAGGAGAGGACCTATCTGTCATCATGGAGAGTGAGGACTTGCTGTGGAATGATTATGAAGAGAAACTAACAGACCAGATAGTTCGCACCATGGAGAATTACACTGGACAGTTTCATGAAGTCAAGGAACGAGTAGCCAAACGTGGTCGGAAGCTCGTAGACTACGATTCCTCACGCCACCACTTGGAGACGCTGCAGAATGCCAAGAAGAAAGACGATGCCAAAATCACCAAGGCAGAGGAGGAGTTCAACAAAGCCCAGAGTGTGTTTGAGGAAATCAACAAAGAGATGAGGGAGGAGCTTCCTGTTCTCTATCAAAGCCGGATTGGATGTTACGTGACCGTCTTTCAAAACATTTCCAACCTGAGGGACGTCTTCTATAAGGAAATGAGTGTGCTGAACCATGAGCTTTACAGCGTGATGAAGAAGCTGGAGACTCAGTATTCAGGAAAAGCTTTTATCATCAAGGGCCTTAACAGCACCAAGTCCAagaagagaaaatccctggtcatctcaGCGCCCATCCCCTGTAACACAGCCTTCCCCTCGGAACACACAGCTCTCCACGCATCCACAGCCCCGGAGAACGGCAAGGAGACCTGTACCCAGAGTATCCCTGAGGAGCCCGCTGCCATCTCAGGAGAGGCTGACGAGGGCACTGGCACAGCGGACCCCTGCGTCTTCACCTCCGTTCTCTCGGACGAGTTGAGCTCCAACGGCACCACTACACCCAACAGGCGGTCGGCGTGCGACAGCGACAACGGGGTCGGGAGTGACGTCGCTTCAGAGGGTCTGAGTGACCTCCAAGATGGCGGTGCTTTGGAAGAGCAGGGCCTTAGCCAATTGCAGGACTCCTCTGCCTTAGAAGAGCAGGTTCAAAGGTCAGAGGTGACCTCTGGAGGTGAGGTCATTACCAGTCAGAAGGCTGTGGCTGAGTCCACAGAGAGCAAAGTCCTATATGACACTGACCAGGCTAATCTTCCAGAGCATGGCAAAGCCAAGGCTCCACCGCGTCCTGCGCCACAACTTTCCTTACCCCACTCTGAGAAGCACTCCTTCCCCCCTGCAGAGGCCAGCCAAGTGGAGGTGGTggaagagaagggagaaagagcTTCCCAGGAGCTGCAGGCAGGTGACACCGAGAGCACTGGAAATGACTCGGACTCCCAGAATCCACCTGGTTTCATTTACAAGGGAGTGGCGCTCGAGGGTCACATTTCAGAAGACGGCACACTGCAGTATGACGTGGAAGATCTGATTCTTATCCTCGCCGACGCAgaggagaagGAAGGCATGGCCAAGGTGGTGAGGGAGAAGACATGTATTGAGCAGGGAGATCTGCCAGAATGAGCCAATTTGTACCTGTCATTCCTGTCTTCCCCTCGAGCTGTGGTGACCCATTCAGTGTTCATGTGCTAGTCAGAACATTTccaacttgctaactggttgtcgTTATACACGTGCCGCGCTCAACCAGTGACCAAGTTGGAGTTCCGATTAGCACACCGGCACACACAATGGCAATGGACGGAGATGGTATGGGTGTGGAGGACTTCGtaagaagagaaagaggaaaaacAGGAACACAAGCCCTATTAATCACACGCTTCCATGTCTCAACTTGTTGGAAGAAAACGATGTGTCATACTTACCGAGAGAATGTTCTTTTGTTAACACATGTTTTTGATATGCAGTATTTTGGCCTTGTTTGTGTTAACATTGTGTAAGTCTCAACTGTGAAACGTATagaaaccatttttttttatattgatgCCATTGAAAGAGTTGTAGTTTAATAAAGTTATGTGAGAGAGGAGTGGTGTTGTTGAAATAGCAAAAAGAATAGCATTTTCACTGTTCTAATAGGTTGCATGGGTCTGCTTTAGCTTTACtgcttaagcaataaggcccgaggaggtgtggtatatggacaatataccacggctaagggctgtccgGATGCACggcgcaacgcagagtgcctggccACAGCCCTGaggtgtggtatattggccaaatatATGACAAACCgcctgaggtgccttattactattataaactggttaccaacgtaattcgAGCAGTAAGAATATTTTCTGTCATACCCGTTGTATACGGTCTGCTATACCACTGCTGAAAGCCAATGaacattcagggcttgaaccacccagtttctaATATTCCATATTCCCATGAGTAGTCAAGCCCCTGTGTatcacatgttacaacacaaGGTGGCGCTAGTGGTCTAACAAACTACAGAGATAACCCATTTTCACTTGAGGTGCTTTCccattctttttttgttgttgcagtgaTTGTGAATATTAGTGTCAACTTCGTGGCCGACCTTGAAACTTGGTGGGATAACCTCATT
>XM_036984085.1
GCTATGACAGTGTCCTTTGTCCCCACCCATCAGGCACCACTTTCCAGAAGTTCTGTTAACAATGGCAGGTGTTCAGCAGGCAGTCTAAGATACTGTGTGCTAACTAGGAGGACTACAGTAGGCagGTGATTAATATATTCATCCTGCGAGCTACCTGTGTTTGGTTGCGCAAAAGTATTGCGTTTACTTGCTGATGACGGGATAAGCATGGTGTGAATCACGGAGTAACTCAACAAAGATATAAGCACAAGAGCAGCGGCTTAACAAGAGGAATCATACACATACCGGAGTGAGAAGACACGATGGCAGAGAACAAGATGGGGCCAAACattggggctggggctggaggtTTTGCCAAACTGGTACAAAAGTCATTGAATCGAGCTCAGGAGAAGGTCATGCAGAAGCTGGGTAAGAACATGGAGACAAAAGATGAACAGTTTGAGCAGTACTCCCAGAACCTTCTCAAACAACAGAATGATGGCGGCAGGCTATTTAAAGACGTCAAAGCATACTTCAGTGCAGTGAAAGTGATGCATGAGACTTCCAAGCGCCTGTCCCAGACGTTAAGAGATGTCTACGAACCTGACTGGCAGGGAGGAGAGGACCTATCTGTCATCATGGAGAGTGAGGACTTGCTGTGGAATGATTATGAAGAGAAACTAACAGACCAGATAGTTCGCACCATGGAGAATTACACTGGACAGTTTCATGAAGTCAAGGAACGAGTAGCCAAACGTGGTCGGAAGCTCGTAGACTACGATTCCTCACGCCACCACTTGGAGACGCTGCAGAATGCCAAGAAGAAAGACGATGCCAAAATCACCAAGGCAGAGGAGGAGTTCAACAAAGCCCAGAGTGTGTTTGAGGAAATCAACAAAGAGATGAGGGAGGAGCTTCCTGTTCTCTATCAAAGCCGGATTGGATGTTACGTGACCGTCTTTCAAAACATTTCCAACCTGAGGGACGTCTTCTATAAGGAAATGAGTGTGCTGAACCATGAGCTTTACAGCGTGATGAAGAAGCTGGAGACTCAGTATTCAGGAAAAGCTTTTATCATCAAGGGCCTTAACAGCACCAAGTCCAagaagagaaaatccctggtcatctcaGCGCCCATCCCCTGTAACACAGCCTTCCCCTCGGAACACACAGCTCTCCACGCATCCACAGCCCCGGAGAACGGCAAGGAGACCTGTACCCAGAGTATCCCTGAGGAGCCCGCTGCCATCTCAGGAGAGGCTGACGAGGGCACTGGCACAGCGGACCCCTGCGTCTTCACCTCCGTTCTCTCGGACGAGTTGAGCTCCAACGGCACCACTACACCCAACAGGCGGTCGGCGTGCGACAGCGACAACGGGGTCGGGAGTGACGTCGCTTCAGAGGGTCTGAGTGACCTCCAAGATGGCGGTGCTTTGGAAGAGCAGGGCCTTAGCCAATTGCAGGACTCCTCTGCCTTAGAAGAGCAGGTTCAAAGGTCAGAGGTGACCTCTGGAGGTGAGGTCATTACCAGTCAGAAGGCTGTGGCTGAGTCCACAGAGAGCAAAGTCCTATATGACACTGACCAGGCTAATCTTCCAGAGCATGGCAAAGCCAAGGCTCCACCGCGTCCTGCGCCACAACTTTCCTTACCCCACTCTGAGAAGCACTCCTTCCCCCCTGCAGAGGCCAGCCAAGTGGAGGTGGTggaagagaagggagaaagagcTTCCCAGGAGCTGCAGGCAGGTGACACCGAGAGCACTGGAAATGACTCGGACTCCCAGAATCCACCTGGTTTCATTTACAAGGGAGTGGCGCTCGAGGGTCACATTTCAGAAGACGGCACACTGCAGTATGACGTGGAAGATCTGATTCTTATCCTCGCCGACGCAgaggagaagCAGGAAGGCATGGCCAAGGTGGTGAGGGAGAAGACATGTATTGAGCAGGGAGATCTGCCAGAATGAGCCAATTTGTACCTGTCATTCCTGTCTTCCCCTCGAGCTGTGGTGACCCATTCAGTGTTCATGTGCTAGTCAGAACATTTccaacttgctaactggttgtcgTTATACACGTGCCGCGCTCAACCAGTGACCAAGTTGGAGTTCCGATTAGCACACCGGCACACACAATGGCAATGGACGGAGATGGTATGGGTGTGGAGGACTTCGtaagaagagaaagaggaaaaacAGGAACACAAGCCCTATTAATCACACGCTTCCATGTCTCAACTTGTTGGAAGAAAACGATGTGTCATACTTACCGAGAGAATGTTCTTTTGTTAACACATGTTTTTGATATGCAGTATTTTGGCCTTGTTTGTGTTAACATTGTGTAAGTCTCAACTGTGAAACGTATagaaaccatttttttttatattgatgCCATTGAAAGAGTTGTAGTTTAATAAAGTTATGTGAGAGAGGAGTGGTGTTGTTGAAATAGCAAAAAGAATAGCATTTTCACTGTTCTAATAGGTTGCATGGGTCTGCTTTAGCTTTACtgcttaagcaataaggcccgaggaggtgtggtatatggacaatataccacggctaagggctgtccgGATGCACggcgcaacgcagagtgcctggccACAGCCCTGaggtgtggtatattggccaaatatATGACAAACCgcctgaggtgccttattactattataaactggttaccaacgtaattcgAGCAGTAAGAATATTTTCTGTCATACCCGTTGTATACGGTCTGCTATACCACTGCTGAAAGCCAATGaacattcagggcttgaaccacccagtttctaATATTCCATATTCCCATGAGTAGTCAAGCCCCTGTGTatcacatgttacaacacaaGGTGGCGCTAGTGGTCTAACAAACTACAGAGATAACCCATTTTCACTTGAGGTGCTTTCccattctttttttgttgttgcagtgaTTGTGAATATTAGTGTCAACTTCGTGGCCGACCTTGAAACTTGGTGGGATAACCTCATT

Function

NR:

description
bridging integrator 2-like isoform X1

GO: NA

KEGG:

id description
K20119 BIN2; bridging integrator 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610606.2 False 3203 mRNA 0.48 13 76178553 76191798
XM_021610607.2 False 3200 mRNA 0.48 13 76178553 76191798
XM_036984085.1 True 2976 mRNA 0.49 14 76178553 76192151

Neighbor

gene id symbol gene type direction distance location
LOC110528502 LOC106565237 coding downstream 11235 76097163 ~ 76167318 (-)
LOC110528501 LOC106565236 coding downstream 92814 76069075 ~ 76085739 (-)
LOC110528500 LOC106583615 coding downstream 118164 76047048 ~ 76060389 (-)
trnaq-uug-2 NA coding downstream 471308 75707174 ~ 75707245 (-)
LOC110528491 LOC106583605 coding downstream 636046 75530377 ~ 75542507 (-)
LOC110528506 LOC106583640 coding upstream 75499 76267650 ~ 76279500 (-)
LOC110528507 LOC106583638 coding upstream 91098 76283249 ~ 76328059 (-)
LOC118965404 NA coding upstream 94983 76287134 ~ 76287188 (-)
LOC110528509 LOC106583637 coding upstream 222129 76414280 ~ 76428175 (-)
LOC110528512 LOC106583634 coding upstream 277936 76470081 ~ 76608047 (-)
G649320 NA non-coding downstream 840 76177362 ~ 76177713 (-)
G649318 NA non-coding downstream 2372 76175962 ~ 76176181 (-)
G649292 NA non-coding downstream 50612 76126640 ~ 76127941 (-)
G649215 NA non-coding downstream 132366 76044214 ~ 76046187 (-)
G649325 NA non-coding upstream 16754 76208905 ~ 76225014 (-)
G649337 NA non-coding upstream 35594 76227745 ~ 76228052 (-)
G649399 NA non-coding upstream 137863 76330014 ~ 76330342 (-)
G649400 NA non-coding upstream 138644 76330795 ~ 76331027 (-)
G649413 NA non-coding upstream 157439 76349590 ~ 76349821 (-)
G649025 NA other downstream 557616 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 1070637 75106897 ~ 75107924 (-)
G646073 NA other downstream 2367096 73810902 ~ 73811457 (-)
G645928 NA other downstream 2483628 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 2968129 73207930 ~ 73210424 (-)
G649327 LOC106583642 other upstream 22550 76214701 ~ 76220931 (-)
G649684 LOC100136508 other upstream 821277 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 1190516 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 1837093 78029244 ~ 78029753 (-)
G650763 NA other upstream 1851148 78043299 ~ 78046469 (-)

Expression


Co-expression Network