LOC110528506 (LOC106583640)


Basic Information

Item Value
gene id LOC110528506
gene name LOC106583640
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76267650 ~ 76279500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984086.1
CAGAAAAGAGAACAGATGTCCTTTAGAGGGGACCAGGCTAATGCCACATGTTGGTGACAGGTACAACACATGCTGGCACTGAGGATGGAGCAAcgaggaagaaaagagaggagagagaggaacaagatGGAGTTATCATGAGACAGAGGgaaaggtagaaagaaagaaaatagaaagagcaaaggagagagagggatagaaagagagagatagagaccccATTTCAGTCTGATAGCCCTGCTCACACAGACGACAGCGGgcaccccctccttccctcccacccGTTTCAGTCTGATAGCCCTGCTCGCACAGACGACAGCAgcaccccctccttccctcccaccctTTTCAGTCTGATAGCCCTGCTCGCACAGACGACAGCAgcaccccctccttctctcccacttGCACAGAAATACCATCACGACCCAATTTGTTTGCTTCCCAGAGGAGAGGAAACCCCTGCCAGCGACTGGACAGGTACTCTTAATGCTTCGCCTCGGGACTCACACCTCATCATCCCCACTCAATGTCACCCTGCAGTCCTTCGCCTTCCGAGCCTTAGAACCACGGACCGTCATCTATTATCACCTCGTTTTTCATCTGCGACTCACCAACCAGCGCCCCACGTcacttctctccagcccaacatgAGAAAGGGACTCCAGGCCAGCCAGGCTGCTCACACAGGGCAGTGGGACGAGCAGAGGCACCACGAGCAGCGGCTGGGGAGGGCAGAGAAAAAGTTAGCAGCCTTCTGGTTGTCCTTGTCGCAGAGGACGTGGACGTTTTTCAGGCCCCGCGGCGGCAAATGCACCGGCTGCTTCCAGCGGAGCTCCTCGGCAGCTCGCCTACTGAAGAGCGAAGcgtgaggactgtgtgtgtgagtgtttgtgtctgtctgtcagcggCGGGTGTCAGAAGAGTCCTGGCAGACACCCCTATCTGGAGGACCCATATCTGCGTGTGTATGTGACCTCCATCCCAAAGGTCAAAGGCAGTCTGTCGTTCTTCAGCCTTCTCCACCATTGGCATTCTTTCTTGGTTGTGTTATCTTAGCAACGTTGACTAAAGATGGAAGGACAAGCTGTCATTCTAATGTCATTCTCATTCAGAAGGACAAACAAACTGTCATTCTAAAGTCCCTGAAATACGTCGAGCCCAGTGGATCGGTTGAAGAGCGTTTGCCGATTTTCTGCTGTCGACTGGAAGGAATCTCCCCATTCACTAAACTAAACTATCAAAGAGGAGACCATACCACAGAGAAGACATTAGTGGTGGAGATTGGTGTGAAAAAGGGCAGCTGTCACTCCCTTAACCCCTACTGGGGACTTTCCAGATGGGGTAACTGCGACCTGCGGAGACCATGGTGGTCACCCATTTAGAGCTAGAGCTGTGCTACCAGGGGAAGAAGCTGAGGGGCTTCACCTGTAAGCTGACCCGCTCCCCACATGGCTATCTGCCTGAGAGTGCCTGGCTCATCTTGGCTCAGATCCTACTGCCCTACCTGGTGGCCGGCCTGGGCATGGTGGCGGCAGGCATAGTCATGGACTTGGTTCAACATTGGGAAGTGTTTAAGGAGATCACAGAGGTGTTTATCTTGGTGCCAGCCCTGGTGGGACTGAAAGGCAACCTGGAGATGACACTGGCATCCAGACTGTCTACAGCAGCGAATACTGGGCAGCTGGATGATCCAAAGCAGCAGTGGAGGATAGTGTGTAGCAACCTGGCTCTCATTCAGgtCCAGGCCACAGTGGTGGGTTTCCTGGCTGCGGTAGCTGCAGTGGGTTTGGGCGCGATGACCAGGGGTCGTGTAGACCTGCTGCAGGCTGCTGTTTTATGTGCCAGCAGCATCACCACAGCCTTTGTAGCTGCCCTGTCATTGGGCCTGGTGATGGTGGGAGTGATCATTGGCTCAAGGAAGGTGGGCATCAACCCTGACAACGTGGCCACGCCCATCGCTGCCAGCCTGGGTGacctcatcaccctctctctgcTGGCTGGGGTCAGCAGCTTCCTCTTCCGGTTTAAAGAGATGTGGTACCTGCCTGCTCTGGTGTGTGGCTTTTTCCTGGTTCTCATTCCGCTGTGGGTGGTCATTGCCCGGCAATCTCCTCCAGTCAGAGAGGTGCTGAGGTCTGGGTGGCAGCCCGTCATCATGGCCATGTCCATCAGCAGTATTGGGGGCCTGATACTGGATAAGACGGTGAGCGACCCGAACTTTGAGGGCATGGCGGTGTTCACTCCCGTAATCAACGGTGTGGGAGGTAACCTGGTAGCCATCCAGGCCAGCCGCATCTCCACCTACCTACACTACTGGAGTATGCCAGGGACCCTGCCCTTCCCGATGACACAACACTGGCCTGGGCCCTGCCTGACCTTCTGCTCCTCAGGGGTCAACTCCAAGTCAGCGAGGGTTCTAGTCTTCCTGGTAGTTCCGGGTCACCTGCTTTTCCTCTACACCATCCACTTACTGAATGGCGGCCATGGCGCCCTCACGCCTGCCTTTGTCTGCCTCTACCTGTGTGCGGCCCTGctacagGTTGTGATACTGCTGTACCTGGCTGACCTGATGGTGCGCTGGATGTGGCGGAGGGGGCTGGACCCGGATAACTACTCTATCCCGTACCTCACGGCTCTGGGGGATCTGTTGGGGACCGGCTTCCTGGCCCTGAGCTTCAGGGCCATTCAATCTATACCAGCCCACCATGTCTAGTGCGACTGAAATTAAGATATAACAACGTGGCCTACACACTGTAGTTTCACAGGCCTCCGACAACCACCAAGCTTGACTTCACATACGGTCTCTTGGCTCCACAGCAGCCCTGTTTATGCCTGCCATTAACATGCGTCCTTCGTCCTGATCTTGTCCATTTACACTTATAAGATCTGATCACAATGCGTCTTTTAAAAGTCtacacaatcagaatgtggaaaaGATCAGGGAAAAGGCGtcatgttagaaccaggtatcaACAGGGCTTAAGAAATGAATGCTGCTAAGGGAGTACCTGTATACTGTAGCTCGACAGTCTTTCAGCGCCCAGTTACCACATAGAAGCTACCTGTTGAGATGTGAACGCTTTAAACGCTTTAATGGTAAAATGGTAAATGCACTGTACTAAAGCAATAATATTGTCTGCGCTTGTTTGTTTGCTGACTGTCTATACATTTATCTTCATTCTCAAAAATGGTTCACTTGTGAGTTTAGTCACAATAAATGTACTAATGCACTCACGGGATAAACACACTATAAACCAATAGAGGACATGGGATTAATCCATGTGTCACAATTTCAATGATCGACCACTGCTACTTTCATTTGTGCCTCCAAACCATTACTGTACAAACTACGGGAGTCATGTGGGGCCTTTTAAGTCAATTAATATATACTTTTAAAAACAGCATCTTTGATGCTCTGCAATGACACAAACAATATAACTTTCACCAAAGATTTCAACAGTTAGAATCATGTTTTCAATTGTACATGTTGACTTAGTATGTATGTTACTGTGTTAACAATAGTCTGATTGTACCTAGAGAGCACTTGCTCACTTGCTCTTATTTTAGTAACCCAATTTGTATCAATGTGTTCCATTGTTGGAGTAAAACCATTCACATACAATGCCTGTCTTCCATTTTATGACCCCACATATCTTACAGTAGAATCAATGCATGTCATGTGATTTTACAaaacagatcaataaaatgtGACCTCACCACCAGCAACATTCAAACACGTCCTTGTGACAACCCTGCATTTCAACACCACGGTACCCAGGCCGATC

Function

NR:

description
solute carrier family 41 member 3-like

GO: NA

KEGG:

id description
K15122 SLC41A; solute carrier family 41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984086.1 True 3788 mRNA 0.51 10 76267650 76279500

Neighbor

gene id symbol gene type direction distance location
LOC110528503 LOC106583643 coding downstream 75499 76178553 ~ 76192151 (-)
LOC110528502 LOC106565237 coding downstream 100332 76097163 ~ 76167318 (-)
LOC110528501 LOC106565236 coding downstream 181911 76069075 ~ 76085739 (-)
LOC110528500 LOC106583615 coding downstream 207261 76047048 ~ 76060389 (-)
trnaq-uug-2 NA coding downstream 560405 75707174 ~ 75707245 (-)
LOC110528507 LOC106583638 coding upstream 3749 76283249 ~ 76328059 (-)
LOC118965404 NA coding upstream 7634 76287134 ~ 76287188 (-)
LOC110528509 LOC106583637 coding upstream 134780 76414280 ~ 76428175 (-)
LOC110528512 LOC106583634 coding upstream 190587 76470081 ~ 76608047 (-)
LOC110528513 LOC106583633 coding upstream 328962 76608462 ~ 76659615 (-)
G649337 NA non-coding downstream 39598 76227745 ~ 76228052 (-)
G649325 NA non-coding downstream 42636 76208905 ~ 76225014 (-)
G649320 NA non-coding downstream 89937 76177362 ~ 76177713 (-)
G649318 NA non-coding downstream 91469 76175962 ~ 76176181 (-)
G649292 NA non-coding downstream 139709 76126640 ~ 76127941 (-)
G649399 NA non-coding upstream 50514 76330014 ~ 76330342 (-)
G649400 NA non-coding upstream 51295 76330795 ~ 76331027 (-)
G649413 NA non-coding upstream 70090 76349590 ~ 76349821 (-)
G649421 NA non-coding upstream 80536 76360036 ~ 76360270 (-)
G649423 NA non-coding upstream 84391 76363891 ~ 76364172 (-)
G649327 LOC106583642 other downstream 46719 76214701 ~ 76220931 (-)
G649025 NA other downstream 646713 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 1159734 75106897 ~ 75107924 (-)
G646073 NA other downstream 2456193 73810902 ~ 73811457 (-)
G645928 NA other downstream 2572725 73694573 ~ 73694925 (-)
G649684 LOC100136508 other upstream 733928 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 1103167 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 1749744 78029244 ~ 78029753 (-)
G650763 NA other upstream 1763799 78043299 ~ 78046469 (-)
eya2 LOC106583664 other upstream 1996648 78209092 ~ 78312601 (-)

Expression


Co-expression Network