LOC110528507 (LOC106583638)


Basic Information

Item Value
gene id LOC110528507
gene name LOC106583638
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76283249 ~ 76328059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984088.1
GTGTAATTCCTAATGGCTGTTACAGTCGCTCACATGCAGCAACCAGCCTTCTGACATTCTCGGCCCGAAATAAAGAGCAACGGTGTCCACACGATCCCTCTCTGCACGCCAGTAGGGGAGACTTTGGCCAGCATTAAAGTAACGTAGTTTGTGATCGCTCATGATGAGGATAGCTGTGATTGGTCAGAGTGTTTTTGGCCTGGAGGTGTACAAGGAGTTGAGGAAGGAGGGCCACACCATCGTTGGAGTGTTCACTATACCTGACAAGGATGGCAAAGCCGACCCTCTAGGCGCGGAGGCTGAGAAGGATGGTGTGAACGTCTTCAAGTTCCCACGCTGGCGCCTGAAGGGGAAAGGCATCCCGGAGGTGGTGCAGGTCTACAAGGCCACGGGGGCCGAGCTCAACGTCATGCCCTTCTGCTCCCAATTCATCCCCATGGAGGTCATCGACCACCCGGCCCACGGTTCCATCATCTACCACCCCTCCCTGTTGCCCCGACACAGGGGTGCCTCCGCCATCAACTGGACCTTGATCCACGGGGACAAGAAAGGTGGGTTCACAGTGTTCTGGGCGGATGACGGACTTGACACTGGACCAATCCTGCTGCAGAGGGAGTGTGATGTGGAGCCTGATGACACTGTCAACACCATCTACAAGAGGTTCCTCTTCCCTGAGGGAGTGAAAGGCACAGTGGATGCAGTGAGGCTGATCGCAGCAGGGAATGCCCCAAAGATCGTCCAGCCAGAGGAGGGAGCCACCTATGAGGGGATTCAGAAGAAAGACAATGCCAAGATTGACTGGAACCAGTCTGCACAGGTCCTACACAACTGGATCAGAGGAAATGACAAAGTGCCTGGAGCCTGGGCAGAGGTTGATGGACAGaAGGTGACGTTCTACGGTTCCTCTCTGCTAGACAGTGGTGCCACTGCTATTGGTCAGCCCCTGGAGATCCCTGGTGCCAGTCAACCCGGTCTGGTCTCTAAGGCGGGCCTGATGCTGTTTGGCAACGACGGCAAAGCGttGCTAGTGAAGAACCTGCAGTTTGAAGATGGGAAGATGATCGCGGCGGCAAGGTACTTCAGCTCTGGGAGCTGCGCTTCTGTGGAGCTCACTGAGGAGGAGAAGGCCTTCGCTGAGCAAATGAGgGGTGTGTGGAAGAGCATCTTGACTAATGTGGATGCCATCGAGGACTCCACTGACTTCTTCAAGTCTGGGGCTGCTTCTATGGACGTGGTCAGGCTGGTGGAGGAGGTGAAGCTGAGGGCCAGTGGGTGTCAGCTGCAGAATGAGGACGTGTACATGAACACCACCTTCCAGGACTTCATCCAGATGTGTGTGAGGAAGCTCCGAGGGGAGGACGACGAGGAGGAGCTGGTCGTTGACTACGTGGAGAAGAACATCAACAACATGACCATCCGGATGCCCCACCAGCTCTTCATCAACGGGGAGTTTGTGGATGCAGAGGGAGGGAAGACGTACAAGACCATCAACCCAACAGATGGAACAgCTATCTGTGATGTGTCTTTAGCTCAAGCCAGTGACGTGGACCGAGCTGTAGCGGCCGCCAAGGAGGCGTtcgaggagggagagtggggaaaGATAAACcccagagacagaggcagactcCTATATAAGCTGGCTGACCTGATGGAGGAGCACCAAGAGGAGTTAGCCACCATAGAGTCCATGGACTCTGGGGCCGTATACACACTGGCCCTGAAGACCCATGTGGGCATGTCCATCCAGACCTTCCGCTACTTCGCTGGCTGGTGTGACAAGATCCAGGGCTGCACCATCCCCATCAACCAGGCCCGACCCAATCGCAACCTTACCTTCACCAAGAAAGAACCAATCGGAGTGTGTGCTATCGTAATTCCCTGGAACTACCCTCTCATGATGTTGGCCTGGAAAACAGCTGCCTGTCTGGCTGCTGGTAACACTGTGGTCCTCAAACCTGCCCAAGTGACTCCACTGACAGCGATGAAGTTTGCTGAATTGGCTGCGAGGGCAGGATTCCCCAAGGGAGTGATCAACATCCTCCCTGGATCAGGTGCTCTGGTGGGCCAGCGTCTGTCCGACCACCCGGACGTCCGGAAGCTTGGCTTTACTGGCTCCACTGAGATAGGGAAACACATCATGAAGAGCTGTGCAGTCAGTAATGTGAAGAAGGTGTCCCTAGAACTGGGGGGTAAATCTCCACTCATCATCTTCAGTGACTGTGACATGGACAAGGCCGTCCGCATGGGATTGAGTGCTGTATTCTTCAACAAGGGAGAGAACTGCATTGCAGCAGGCAGACTCTTTGTGGAAGAGAACATCCATGACCAGTATGTCAAGAGAGTGGTGGAGGAGGTTAAGAAGATGAAGATTGGAGATCCTCTGGACCGCTCCACAGACCACGGACCCCAGAACCACAAGGCCCACTTGGACAAGCTGGTGGAGTACTGCCAGACAGGCGTGAGGGAAGGCGCCACTCTGGTGTGTGGGGGCAAACAGGTCTCCCGCCCAGGATTCTTCTTTGAGCCCACCATCTTCACCGATGTTCAGGACCACATGTTCATTGCTATAGAGGAGTCGTTTGGCCCCGTCATGATCCTCTCCAAGTTCAAGAGCGGggATGTGGACGAGGTTCTGCGGAGGGCCAATGCCACTGAGTATGGCCTGGCATCAGGAGTGTTCACCCGTGACATCAGCAAGGCGCTGTATGTCAGCGAGAAGCTCAACGCCGGCACCGTCTTTGTCAACACCTACAACAAGACGGACGTGGCTGCTCCCTTCGGCGGATTCAAGCAGTCCGGCTTTGGCAAAGATCTGGGACAAGAGGCTCTTAACGAATACCTGAAGACCAAGGCTGTCACTGTAGAGTACTAAatatacagctctggaaaaaatgAAGAGACCACTACAAAATGATCAAtttctctggttttactatttataggtatgtTTTTGGTTAAAatgaacatttttgttttattctataaactactgacaacatttctcccaaattccaaataaaaaatattgtaatttaagagcatttatttgcagaaaatgtgAAGGATCAAAATAACAAAaagatgcagtgttgtcagaccttgaataatgcaaagaaaaatgttaatattcatttttaaacaacacaatactaatgttttaacttaggaagagttcagaaatcaatatttggtggaataaccctgattttcaatcagactgatcctccaccaaatttcacagtggcTGCGAGACAGAgcatgccaagacgcatgaaagcTGTAAAACCAGAGACATTGATAATTTTGCAGTGGTCTGTTAATTTTTTccagagttatagagagatgtgtggtagctacccactgggcacagacgtcagttcaacgtctagttttgatttgcatttggttgagttgtcaactaacacaAATTcaatttaggttaaaagtttgttaaaaaatccaatcagttttcctgTTGATTCAACGTTAAcacattattatatatatttgtttaaatggcttggaaacaatgttgattccaaacggtttttgcccagtgggtattCTCTCTTTATAATCAGACTCACTGATGTCACTAAGCAAATTCCTGAACTAAATGTGAATGATAGACGAGGCAGAAAGGAAACCTAATACCTCCACATGCCCTGATGAACAATTCTACTTGTAATTCAGTCTTTCTGAAATGTGATTAACCCTCTAATATTTCTTAGTGCTGTTTGCACAATTACTTATGAAATTGAATTTTTTTATTAATGAGAAATACAATGTGAAATGATTTCCCCCTCTTAGAAATAAGAAagtctgtcttaaatcattttccacacacagcctgtgcctgtatttagtttcatgctagtgagggctgagaatccactctcacacaggtacgtggttgcaaagggcatcagtgtcttaacagcgcaataTGCCAATGCAGGATagtctgagcgcagcccaatccagaaatctggcagtggcttctgattaaattaaattctcaccgaaccgcttgttgcaattttgatgaggctctctcaTTCAGATTtctgtaagtggactggaggcagggcatgaaagggataacgaatctaGTTGTGTCAACCGTTTCGGAAAAGTATGTGCTTAATTACatacccaactcactcaggtgcttcgctatatcacatttgacattgtacgTAAGCTTGagttaaaaaaaacatcacccagataggccagtcatgtgagaaactcattatcatgcaagtggtcagacaagtgaaaattatggtcagtaaagaaaagtttaagctcgtctctcatttaaaaaaaaactttcaatactttgccccttgataaccagcgcacttctgtatgttgtaaaagcattacatggtcgctgcccatatgattgcatagtgcagaaaatacacaagagttcaggggccttgctttaagaaagttaacaattttcactagtgtccaaaacgtattttaagttgtcaggcattcccttggcagtaaGAGCCTCTCGATGGATGCTGCATGGTACTCAATTGGCATCGGGAGAAACTGCTTGCATGCGTATTACCACTTCACTatatctccctgtcatggcttttgcaccatcagtacagataccaacatgagcagcagctacgtttggctacatacggaccgttagtggaattccagcAAGAGactaacggttaatgtgattggatgttaattatttgactaggctacctgtatttgacattgcgttgttatttcgctgaacactagatggtttcattttatttttggcagtgaaacaaggcaaCTCAGACAATTAAAAAAtgctcacccaaatgtatagccctgttggaaaatataaatggactgtttgaaaatgtggagagaaaaaagttaaatgtttatttttttatttctattaatgttgatcacatttttatttggcgtacccctgaCGGCATtgcaccccagtttgggaatacctggtctaCACAATAGATGTGTTGTGTTCATGGACAATACTGGATGACAATTGAATGGAACTTTATGAATGATGATCTCCATATCAGAGCTTGAACAAGCGCCTTTTTACTAGTTTTCCTGattcattaaaatcacaaagGTTTATACAGTAATA
>XM_036984087.1
CTGTTGTGTAATTCCTAATGGCTGTTACAGTCGCTCACATGCAGCAACCAGCCTTCTGACATTCTCGGCCCGAAATAAAGAGCAACGGTGTCCACACGATCCCTCTCTGCACGCCAGTAGGGGAGACTTTGGCCAGCATTAAAGTAACGTTTGTGATCGCTCATGATGAGGATAGCTGTGATTGGTCAGAGTGTTTTTGGCCTGGAGGTGTACAAGGAGTTGAGGAAGGAGGGCCACACCATCGTTGGAGTGTTCACTATACCTGACAAGGATGGCAAAGCCGACCCTCTAGGCGCGGAGGCTGAGAAGGATGGTGTGAACGTCTTCAAGTTCCCACGCTGGCGCCTGAAGGGGAAAGGCATCCCGGAGGTGGTGCAGGTCTACAAGGCCACGGGGGCCGAGCTCAACGTCATGCCCTTCTGCTCCCAATTCATCCCCATGGAGGTCATCGACCACCCGGCCCACGGTTCCATCATCTACCACCCCTCCCTGTTGCCCCGACACAGGGGTGCCTCCGCCATCAACTGGACCTTGATCCACGGGGACAAGAAAGGTGGGTTCACAGTGTTCTGGGCGGATGACGGACTTGACACTGGACCAATCCTGCTGCAGAGGGAGTGTGATGTGGAGCCTGATGACACTGTCAACACCATCTACAAGAGGTTCCTCTTCCCTGAGGGAGTGAAAGGCACAGTGGATGCAGTGAGGCTGATCGCAGCAGGGAATGCCCCAAAGATCGTCCAGCCAGAGGAGGGAGCCACCTATGAGGGGATTCAGAAGAAAGACAATGCCAAGATTGACTGGAACCAGTCTGCACAGGTCCTACACAACTGGATCAGAGGAAATGACAAAGTGCCTGGAGCCTGGGCAGAGGTTGATGGACAGaAGGTGACGTTCTACGGTTCCTCTCTGCTAGACAGTGGTGCCACTGCTATTGGTCAGCCCCTGGAGATCCCTGGTGCCAGTCAACCCGGTCTGGTCTCTAAGGCGGGCCTGATGCTGTTTGGCAACGACGGCAAAGCGttGCTAGTGAAGAACCTGCAGTTTGAAGATGGGAAGATGATCGCGGCGGCAAGGTACTTCAGCTCTGGGAGCTGCGCTTCTGTGGAGCTCACTGAGGAGGAGAAGGCCTTCGCTGAGCAAATGAGgGGTGTGTGGAAGAGCATCTTGACTAATGTGGATGCCATCGAGGACTCCACTGACTTCTTCAAGTCTGGGGCTGCTTCTATGGACGTGGTCAGGCTGGTGGAGGAGGTGAAGCTGAGGGCCAGTGGGTGTCAGCTGCAGAATGAGGACGTGTACATGAACACCACCTTCCAGGACTTCATCCAGATGTGTGTGAGGAAGCTCCGAGGGGAGGACGACGAGGAGGAGCTGGTCGTTGACTACGTGGAGAAGAACATCAACAACATGACCATCCGGATGCCCCACCAGCTCTTCATCAACGGGGAGTTTGTGGATGCAGAGGGAGGGAAGACGTACAAGACCATCAACCCAACAGATGGAACAgCTATCTGTGATGTGTCTTTAGCTCAAGCCAGTGACGTGGACCGAGCTGTAGCGGCCGCCAAGGAGGCGTtcgaggagggagagtggggaaaGATAAACcccagagacagaggcagactcCTATATAAGCTGGCTGACCTGATGGAGGAGCACCAAGAGGAGTTAGCCACCATAGAGTCCATGGACTCTGGGGCCGTATACACACTGGCCCTGAAGACCCATGTGGGCATGTCCATCCAGACCTTCCGCTACTTCGCTGGCTGGTGTGACAAGATCCAGGGCTGCACCATCCCCATCAACCAGGCCCGACCCAATCGCAACCTTACCTTCACCAAGAAAGAACCAATCGGAGTGTGTGCTATCGTAATTCCCTGGAACTACCCTCTCATGATGTTGGCCTGGAAAACAGCTGCCTGTCTGGCTGCTGGTAACACTGTGGTCCTCAAACCTGCCCAAGTGACTCCACTGACAGCGATGAAGTTTGCTGAATTGGCTGCGAGGGCAGGATTCCCCAAGGGAGTGATCAACATCCTCCCTGGATCAGGTGCTCTGGTGGGCCAGCGTCTGTCCGACCACCCGGACGTCCGGAAGCTTGGCTTTACTGGCTCCACTGAGATAGGGAAACACATCATGAAGAGCTGTGCAGTCAGTAATGTGAAGAAGGTGTCCCTAGAACTGGGGGGTAAATCTCCACTCATCATCTTCAGTGACTGTGACATGGACAAGGCCGTCCGCATGGGATTGAGTGCTGTATTCTTCAACAAGGGAGAGAACTGCATTGCAGCAGGCAGACTCTTTGTGGAAGAGAACATCCATGACCAGTATGTCAAGAGAGTGGTGGAGGAGGTTAAGAAGATGAAGATTGGAGATCCTCTGGACCGCTCCACAGACCACGGACCCCAGAACCACAAGGCCCACTTGGACAAGCTGGTGGAGTACTGCCAGACAGGCGTGAGGGAAGGCGCCACTCTGGTGTGTGGGGGCAAACAGGTCTCCCGCCCAGGATTCTTCTTTGAGCCCACCATCTTCACCGATGTTCAGGACCACATGTTCATTGCTATAGAGGAGTCGTTTGGCCCCGTCATGATCCTCTCCAAGTTCAAGAGCGGggATGTGGACGAGGTTCTGCGGAGGGCCAATGCCACTGAGTATGGCCTGGCATCAGGAGTGTTCACCCGTGACATCAGCAAGGCGCTGTATGTCAGCGAGAAGCTCAACGCCGGCACCGTCTTTGTCAACACCTACAACAAGACGGACGTGGCTGCTCCCTTCGGCGGATTCAAGCAGTCCGGCTTTGGCAAAGATCTGGGACAAGAGGCTCTTAACGAATACCTGAAGACCAAGGCTGTCACTGTAGAGTACTAAatatacagctctggaaaaaatgAAGAGACCACTACAAAATGATCAAtttctctggttttactatttataggtatgtTTTTGGTTAAAatgaacatttttgttttattctataaactactgacaacatttctcccaaattccaaataaaaaatattgtaatttaagagcatttatttgcagaaaatgtgAAGGATCAAAATAACAAAaagatgcagtgttgtcagaccttgaataatgcaaagaaaaatgttaatattcatttttaaacaacacaatactaatgttttaacttaggaagagttcagaaatcaatatttggtggaataaccctgattttcaatcagactgatcctccaccaaatttcacagtggcTGCGAGACAGAgcatgccaagacgcatgaaagcTGTAAAACCAGAGACATTGATAATTTTGCAGTGGTCTGTTAATTTTTTccagagttatagagagatgtgtggtagctacccactgggcacagacgtcagttcaacgtctagttttgatttgcatttggttgagttgtcaactaacacaAATTcaatttaggttaaaagtttgttaaaaaatccaatcagttttcctgTTGATTCAACGTTAAcacattattatatatatttgtttaaatggcttggaaacaatgttgattccaaacggtttttgcccagtgggtattCTCTCTTTATAATCAGACTCACTGATGTCACTAAGCAAATTCCTGAACTAAATGTGAATGATAGACGAGGCAGAAAGGAAACCTAATACCTCCACATGCCCTGATGAACAATTCTACTTGTAATTCAGTCTTTCTGAAATGTGATTAACCCTCTAATATTTCTTAGTGCTGTTTGCACAATTACTTATGAAATTGAATTTTTTTATTAATGAGAAATACAATGTGAAATGATTTCCCCCTCTTAGAAATAAGAAagtctgtcttaaatcattttccacacacagcctgtgcctgtatttagtttcatgctagtgagggctgagaatccactctcacacaggtacgtggttgcaaagggcatcagtgtcttaacagcgcaataTGCCAATGCAGGATagtctgagcgcagcccaatccagaaatctggcagtggcttctgattaaattaaattctcaccgaaccgcttgttgcaattttgatgaggctctctcaTTCAGATTtctgtaagtggactggaggcagggcatgaaagggataacgaatctaGTTGTGTCAACCGTTTCGGAAAAGTATGTGCTTAATTACatacccaactcactcaggtgcttcgctatatcacatttgacattgtacgTAAGCTTGagttaaaaaaaacatcacccagataggccagtcatgtgagaaactcattatcatgcaagtggtcagacaagtgaaaattatggtcagtaaagaaaagtttaagctcgtctctcatttaaaaaaaaactttcaatactttgccccttgataaccagcgcacttctgtatgttgtaaaagcattacatggtcgctgcccatatgattgcatagtgcagaaaatacacaagagttcaggggccttgctttaagaaagttaacaattttcactagtgtccaaaacgtattttaagttgtcaggcattcccttggcagtaaGAGCCTCTCGATGGATGCTGCATGGTACTCAATTGGCATCGGGAGAAACTGCTTGCATGCGTATTACCACTTCACTatatctccctgtcatggcttttgcaccatcagtacagataccaacatgagcagcagctacgtttggctacatacggaccgttagtggaattccagcAAGAGactaacggttaatgtgattggatgttaattatttgactaggctacctgtatttgacattgcgttgttatttcgctgaacactagatggtttcattttatttttggcagtgaaacaaggcaaCTCAGACAATTAAAAAAtgctcacccaaatgtatagccctgttggaaaatataaatggactgtttgaaaatgtggagagaaaaaagttaaatgtttatttttttatttctattaatgttgatcacatttttatttggcgtacccctgaCGGCATtgcaccccagtttgggaatacctggtctaCACAATAGATGTGTTGTGTTCATGGACAATACTGGATGACAATTGAATGGAACTTTATGAATGATGATCTCCATATCAGAGCTTGAACAAGCGCCTTTTTACTAGTTTTCCTGattcattaaaatcacaaagGTTTATACAGTAATA

Function

NR:

description
cytosolic 10-formyltetrahydrofolate dehydrogenase-like

GO:

id name namespace
GO:0009258 10-formyltetrahydrofolate catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016742 hydroxymethyl-, formyl- and related transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016155 formyltetrahydrofolate dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00289 ALDH1L; formyltetrahydrofolate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984088.1 False 5152 mRNA 0.47 23 76283249 76328054
XM_036984087.1 True 5154 mRNA 0.47 23 76283249 76328059

Neighbor

gene id symbol gene type direction distance location
LOC110528506 LOC106583640 coding downstream 3749 76267650 ~ 76279500 (-)
LOC110528503 LOC106583643 coding downstream 91098 76178553 ~ 76192151 (-)
LOC110528502 LOC106565237 coding downstream 115931 76097163 ~ 76167318 (-)
LOC110528501 LOC106565236 coding downstream 197510 76069075 ~ 76085739 (-)
LOC110528500 LOC106583615 coding downstream 222860 76047048 ~ 76060389 (-)
LOC110528509 LOC106583637 coding upstream 86221 76414280 ~ 76428175 (-)
LOC110528512 LOC106583634 coding upstream 142028 76470081 ~ 76608047 (-)
LOC110528513 LOC106583633 coding upstream 280403 76608462 ~ 76659615 (-)
LOC110528515 LOC106583630 coding upstream 410941 76739000 ~ 76793149 (-)
LOC110529031 LOC106583629 coding upstream 465523 76793582 ~ 76979155 (-)
G649337 NA non-coding downstream 55197 76227745 ~ 76228052 (-)
G649325 NA non-coding downstream 58235 76208905 ~ 76225014 (-)
G649320 NA non-coding downstream 105536 76177362 ~ 76177713 (-)
G649318 NA non-coding downstream 107068 76175962 ~ 76176181 (-)
G649292 NA non-coding downstream 155308 76126640 ~ 76127941 (-)
G649399 NA non-coding upstream 1955 76330014 ~ 76330342 (-)
G649400 NA non-coding upstream 2736 76330795 ~ 76331027 (-)
G649413 NA non-coding upstream 21531 76349590 ~ 76349821 (-)
G649421 NA non-coding upstream 31977 76360036 ~ 76360270 (-)
G649423 NA non-coding upstream 35832 76363891 ~ 76364172 (-)
G649327 LOC106583642 other downstream 62318 76214701 ~ 76220931 (-)
G649025 NA other downstream 662312 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 1175333 75106897 ~ 75107924 (-)
G646073 NA other downstream 2471792 73810902 ~ 73811457 (-)
G645928 NA other downstream 2588324 73694573 ~ 73694925 (-)
G649684 LOC100136508 other upstream 685369 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 1054608 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 1701185 78029244 ~ 78029753 (-)
G650763 NA other upstream 1715240 78043299 ~ 78046469 (-)
eya2 LOC106583664 other upstream 1948089 78209092 ~ 78312601 (-)

Expression


Co-expression Network