LOC110528509 (LOC106583637)


Basic Information

Item Value
gene id LOC110528509
gene name LOC106583637
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76414280 ~ 76428175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610615.2
tacaccagCAGTCATGTGACGGTAATATAGTACAACTACTCTGCCTCGCTGCTAATCAGTCTGAACGGTTCTGGTAGGCAAGTCTCAAGGACAAACCATGCATTCGAGATAGAGATTCCCCATCAAATGCAAAGGAAAGACAATGCATTGGGATAAAATAAGGGATTTGTAAATGCTTTATTGAAAAAGATATATCCTGGCTGGAAACCTTGGAATTAAAGTATTTTCCTACCGAAGCATTCTTATTTTTTATCCTGAGAGAGAACAACAGGTGTTTCTCTATTTTTTTTCTGCGAAGCGTGACCTTGCTGTGGTGACCCCTTCTGGGGTTTATTTGTTGACAGTTTCCCGACAACAAGAGGAATAACCCTAACAAACTGTTATATCAGTAAGACAATTTTCAACACAAATTGGAGTGACAATCTCTTGGCCCATAGCCAGGAATGGTGGATAACTTCCTATTGAGCGGCGAGGAGACTTTCGTAACTTACGATAGCGCCCCTTCGGTGTATCACCTGTCGGACATGGTGACGGATGCAGGGACCTACCAGGTGATGCCCTCGCCCTTCTCCGAGGATGACCTGAGCGAGTCATCAAGCCCTCGCTCCTGTTCTAGCCCCGACTCCCAAGTGCTCAGCTCCAGCTATGGCAGCAGCTCCAGCGCCGAGAGTTCAGACAGCATCCTGGACTTCCTGCTGTCCCAGACCTCCCTAGGCGGAGCAGGGACTGCGGCGGCCATCCCCATGTCACTGCCCACCTCTCTGTGGGACTCACAGAGGGATGAGCCATCCCACCCCCATCCAGAGGCCTTGAAGGAGGAGAGTGTGGACTTCTCTGTCTGGTCCTTGGTGGACATGGAGCAGCCATCCTTCCAGCCCACattggaggagatagaggagttcTTGGAGGAGAACATGGAGGTGGTGTCATCCATGAAGCAGGAGGCCCGGGAGGGGGCGCTGGGGCTGGGTCTGGAGGAGATCATGGGGCTGGGGGTGGGACTGGAGGTGTACAGGGAGTCCTCATCCCCAGGGTCAAGGCTGGAGCCCGAGGCCAAGCATTCAGACCAAACTGTGTTTACCGagaatgctgccaccaccaccgaGACCAAAATCACACCGGCCTCGCCGGCACAGGAGTCCATAGAAGGTCTGCACGAAGACAGGTCCAAGAGTGATTCATTATCCAGCAGGCTTGGGACAACAGAGAGCTTTGCAAACCGTGGCAGCAGTGGGATGCCGGTCATCCTGCAGATCCAGCCCATGCAGATCAAAAATGAACCCAGTTCCTCGGCTCCTCATCATCCTCCCCAAGTCGTCCAGCCTCCCCCTCAGCCGGCATCCGACATCAAAATTGCCCAGCTGCTGGTCAACATCCAGGGGCAGACCTTCGCCCTGGTTCCCCAGCTGCTGCCCTCCACCAGCCTTAATGTCTCCTCCAAGTTTGTGCGCATCGCTCCAGTGCCCATTGCAGCCAAGCCCCTGGGCCTTGGGGAGGTGCTGGTTGGGGTCCAGGGCCAAGGGCTCCATGTGGGGGGTCAGCAGTTTCAGAAGAACCCTGTGGCGGACCTCATCAAAATGCACAAATGCACTTTCCCCAGCTGTACCAAGATGTACACCAAGAGCAGCCACCTGAAAGCCCACCTCCGGcgacacacaggggagaagccctTCGCCTGCACCTGGCCAGGCTGTGGATGGAGGTTCTCGAGGTCAGATGAGCTGTCGCGACACCGGCGGTCCCACTCAGGGATCAAGCCCTAccagtgtccagtgtgtgagaAGAAATTTGCCCGCAGTGACCATCTGTCAAAACACATCAAAGTCCACCGCTTTCCGCGAAGCCGGACACTGCGCACAACAAACTGACCACACCCGGACCACTCTTCAATGGACACAGACCAAAGGAGCAcggaatgtgtgtctgtgagatggAATTTGTGTGAATGTGCTTGTGTGAGAGTGTGGTATGACttacgggggggagagagagaaaaagagccagagagagagagcaagagagaaaaagagagagagagagaaaaagagcgagagagaaagagctagagagagaggggtcgagagagcgCGAGCACGAGAGAGCGATGGAGATGGAAGATTTATGTGTGCCTTGCCTTTTAGAGAGATCTATAACAGTGGTCTTGTGCTATAATTTATTGTTGAAAGCAAAAGCAAAACCAACACATGACACTTACCATCTTCTTAGTAATCAACGTTTCTTGAGATTCTTATTGCTGTTGGTATTTTGTACactttttatttgtttttctgttcagtctttattttatttttcaattaAAGATTGTTTTCATTTGAGATGAAATGTATTAATTGCTTCAGTAATAGCCTTGAGTTTCTATTTTACCTGGATATGACTGCCTTTTACCTTGTTAAGAAGTGCCAATGTCTTTGACATTCCTCATCCAAGTCCGGTTGAAGTTCGCCCGGAAAAGTTCTCCTTGTTTTTTGCCTTGTCACTCATAGCTCATTGACAGAGGGTAAAGAATAGCTTACTCATTCATCACACTGTTTGTTCAAAGGGAGTGGCAGAGCATATTGTCAATTCTGTACATAAACTACTGATAACAAATATGAACATGTCGCTCGCTATAAGCTACTGGGACTCTTCTCAAGTTCCAGAAAAACTTCCCCAGCTCAGATTCTGAGACAAGGCGGatgaaagtaaaagaatggaacaAAGAAAGAATTGCGCACATTTATGATTGTTGATTGTTTTATGTGTAAAAAAAAGCCTTCCAATCAGTGTTAGATTTTGTATTCAGCTTTTTATTCTAAACTCATGTTGTGTATTTGTTGGTCTTTTTCGTGTCAGTGGCTCAAGCCGTTCGTAAGACACTTGTCTGGCCTTAACCCGCCACAGCATCCTTACTAGGGGGGCAAAATGGTCTGAATAACAAGTGATTCATTGCAGGCATGTTTTATGGATTAATGGTGGCATGGTTTGAGAGAATGAGGAAAGGGAATTGGAAATGCATAATCCTTTAATCCTGTCAATGGAATTGAATCTCAATGAGCTTTTTCTCTCCTTTTTGCTGTTGACACAAAATCTGCCTCAAATCAGCTCCACAATCTGATCTGTTACTGGAATACCCCAGAAGCTTATGTTGAAGTGAGGTTATCATGTATGTGGATACCACTACACCACGGTGCTGAACAACCAGAATAACTACCTTCTGGAAACTGTTGTCATAACACACTTATTAGGCCATGGCACAGTTGTCATTATTCTTGATGTCCTGTTTGCTCTTGAGACTTGTTGGTTAAGTACGCCACGCCCTGTTGTGAAAGTACGGTGTGTGAGACACCATTCATGCATAGTTAATGTGATGTTCGCAGATGAAAAAGCAGGGGTACATTATATTGTACATAATTCCTTTCATTCAATTTTTGAATTTTTAATGCTTGTTTAAACACAGGTGTTTTATCGCATCCTATGAATGCATGTGAATATGCAGGAGTGTACATGGCTACACAGAAGACTATTGTAATAACATATCTTAAGGCCAAGATTCAggactctattcaatctgtaaagCTGAAGCGTCATTTCTgattgagctgacatatgcagtgtttaccgtgaATCCAGTCTCCGCTAAACAGGAACCTTGCCTTTAAATTAAATCACTCTGTAAAGCTGAACTTCTGCGATggggattgaatagagccctcaatcagatcaagcgttaaTCGGCGATAGCCGACACCtgcatagctgatgttttggcgTTGTCTGAACTGCGTTGGAGCGCTCAAATCgttgagcagctgctcttgttaTCTTTTTCATGAAGCCACACCCATCCCACTTGCAttagaagttcagaacgagaaagtctaggctatatagaaataatgatgCTCATTGAAAATCATTCAACAGAATATTaaggatttctatcagcctaataGAGGTGTAGATTCCATTTTGCATTCCAGTGTtccaacttgtaaacaaggctgcatgggatttctcttaatgtgactttgcagccaatggcaatgtcccctttaggtataatgccgggagccacttgtggatttgacagctccaacacaGTTCCACCTCGGACACCGTCAAAACATCAGCTATGTGGATGGATGCTAATCCGGATCTGATTGAATCGGACCCTTCGTTTGTGGTTGTGTAGATTTCTAGTATACGCCCTAAACGTGTACATAACAAAACATTTCAGAACATATcaatatattatattttttttctttgttCTACCCAAGATGCATTTACAAATAAAATTTTAAGAAGCGA
>TU738081
CTATGAATGCATGTGAATATGCAGGAGTGTACATGGCTACACAGAAGACTATTGTAATAACATATCTTAAGGCCAAGATTCAggactctattcaatctgtaaagCTGAAGCGTCATTTCTgattgagctgacatatgcagtgtttaccgtgaATCCAGTCTCCGCTAAACAGGAACCTTGCCTTTAAATTAAATCACTCTGTAAAGCTGAACTTCTGCGATggggattgaatagagccctcaatcagatcaagcgttaaTCGGCGATAGCCGACACCtgcatagctgatgttttggcgTTGTCTGAACTGCGTTGGAGCGCTCAAATCgttgagcagctgctcttgttaTCTTTTTCATGAAGCCACACCCATCCCACTTGCAttagaagttcagaacgagaaagtctaggctatatagaaataatgatgCTCATTGAAAATCATTCAACAGAATATTaaggatttctatcagcctaataGAGGTGTAGATTCCATTTTGCATTCCAGTGTtccaacttgtaaacaaggctgcatgggatttctcttaatgtgactttgcagccaatggcaatgtcccctttaggtataatgccgggagccacttgtggatttgacagctccaacacaGTTCCACCTCGGATCTGATTGAATCGGACCCTTCGTTTGTGGTTGTGTAGATTTCTAGTATACGCCCTAAACGTGTACATAACAAAACATTTCAGAACATATcaatatattatattttttttctttgttCTACCCAAGATGCATTTACAAATAAAATTTTAAGAAGCGA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610615.2 False 4311 mRNA 0.46 3 76414280 76428175
TU738081 True 797 lncRNA 0.40 2 76414280 76415118

Neighbor

gene id symbol gene type direction distance location
LOC110528507 LOC106583638 coding downstream 86221 76283249 ~ 76328059 (-)
LOC118965404 NA coding downstream 127092 76287134 ~ 76287188 (-)
LOC110528506 LOC106583640 coding downstream 134780 76267650 ~ 76279500 (-)
LOC110528503 LOC106583643 coding downstream 222129 76178553 ~ 76192151 (-)
LOC110528502 LOC106565237 coding downstream 246962 76097163 ~ 76167318 (-)
LOC110528512 LOC106583634 coding upstream 41912 76470081 ~ 76608047 (-)
LOC110528513 LOC106583633 coding upstream 180287 76608462 ~ 76659615 (-)
LOC110528515 LOC106583630 coding upstream 310825 76739000 ~ 76793149 (-)
LOC110529031 LOC106583629 coding upstream 365407 76793582 ~ 76979155 (-)
LOC110528518 NA coding upstream 578139 77006314 ~ 77007143 (-)
G649426 NA non-coding downstream 21133 76369948 ~ 76393147 (-)
G649423 NA non-coding downstream 50108 76363891 ~ 76364172 (-)
G649421 NA non-coding downstream 54010 76360036 ~ 76360270 (-)
G649413 NA non-coding downstream 64459 76349590 ~ 76349821 (-)
G649400 NA non-coding downstream 83253 76330795 ~ 76331027 (-)
G649579 NA non-coding upstream 232838 76661013 ~ 76661659 (-)
G649580 NA non-coding upstream 233590 76661765 ~ 76662054 (-)
G649582 NA non-coding upstream 236033 76664208 ~ 76664457 (-)
G649583 NA non-coding upstream 236295 76664470 ~ 76664727 (-)
G649327 LOC106583642 other downstream 193349 76214701 ~ 76220931 (-)
G649025 NA other downstream 793343 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 1306364 75106897 ~ 75107924 (-)
G646073 NA other downstream 2602823 73810902 ~ 73811457 (-)
G645928 NA other downstream 2719355 73694573 ~ 73694925 (-)
G649684 LOC100136508 other upstream 585253 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 954492 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 1601069 78029244 ~ 78029753 (-)
G650763 NA other upstream 1615124 78043299 ~ 78046469 (-)
eya2 LOC106583664 other upstream 1847973 78209092 ~ 78312601 (-)

Expression


Co-expression Network