si:ch73-267c23.10 (LOC106583622)


Basic Information

Item Value
gene id si:ch73-267c23.10
gene name LOC106583622
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77121611 ~ 77145722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610640.2
TACTTCTTTAGTGTTGCTGATCATATGCTGGTGGGGGCAATAGCCTACGATCGAATGCGGGAACCAACAGACTGCATGCTTCAAGTATTGTTGCGCTTACAGCCGCATGCACTTGTAGCCTGCATATCAACTGGGAATAGGCTATTTGAAGTTGAAAATTACAGTTGATTCCTGTCGTTGATAGTTCTTAGAAACGAAATGGATGCCAATCCATCCTTCTCGCTGGCATGTCTTTACAGAAGCGATCCAATTTATTCCCTCTGTGCCTCAGATTTAATGACCGCTTCTCAAACTGTGAACAATAATTTCATAAAGGAACAGAAGCAACTTATGAAGactCTGAAGaggctggagcagcagcagcttaCCTGCATGCGTCAGCTGAACGAGGAGCAGAGGACCTTTTCCTTCATCATGAACAAGAGGCTAAGCCAGAGGGGCGCTACGAGGCCTCAAACGCTCCCCTCCACCTCAGTCTCCTCTTCCATCGTCCCTCTGTCCATTAGGGGGTCCCGGTCTGCCACGGCTGCTCTTGCCACCTGCAATGGGGCCAACAGAGTTGGCAGTGCCAAGAGCACCAACAGCAGAGTCAAGTTTGAGCAGTCTTCTTCCAGCCTCTTGCCGTGGGCAGTGAAATTACAGAAGAAGAGTATGGAGATGCAGGACAGAGAGGCAAGGGAGGTTTTGAAGGAGTATGGGGCCTCGGCTGGTCAAAGGTGTTGTTGTGAATGTGGTCACACCAGGGAGCTGTTGGACAGGAGACTGAGTTGTCCAGCCATATTACAGAGGCATCACTCTTGATTCTGCTACAGTATGGGGTGTTATGGACGTACGATACAGTATATTGCTACAGGGGGGTGCGAGAGTTTCTCCTGAACATCATCTACCTACTTGTACTGGATCGATATAGCTACCTTATTTCTTGGAGGTTATGCCATGCCAATGGATATCTGGACAGCATTTTACGTGACCGATAACTGAGTAACACTGTACGTCATGACCGATAAATGAGTAACACTGTACGTCTTGACAGCTTCATAATAAGTTACCTGAACTATGTCAACATGTCATTACAGTACATGAAAAATGACACTGCCTTGTCACTTGACATTCAGTGACATAAGATGCCTTTACATCTTTTGACATTTGTTATGTCATGTTTATGACCATAATATGACACTGTTATGATGTGCagttcaaataaagtgttaccaaggTACATTCTGTGTTCACCTATATAACTTGTTTCCTGAAGATGACAAcataatatgtatatattgtttttgtttttttcatggGAAGTTGAATGccaagttttatttttttatcaaaatgtaaaTTAGATCTGACTGTTACTCAAAGGAATATGttcataatgttttttttaaattgatgacatatttttgtgtgtgtagtttactaaataaactgtaaACTGTAGCTTATACTGTATGTTGAGGTTGGAATTCAAACATTTGATTTTAGACCAATGACAGCATTAATAAGAGATGAAACCGATTGGACCGTAGCAGCAACATTGTATCGACTGTACTTATCTGAAAGTAGTGACATCATCCTGTGTGACGCATTGGGAAACAACCTTCAACGGAAGGAAATCACAGAAGATTGCCTACAGTTGAGGACTTAGTCTAGCAATCGCTTGTACAGCGCTACAACAAAATCATTTATTTAAAATATTTAGTATTTTCAAAAGTTGTTACTCAAATTGTATCTACACTGAGAGTCCAGGACAGAAAAGTAACGTGTACCGTTCCAGGAAGAAAACCACTAAAGAGATTGAGTGCAATCTTGTGCCGAAATCAGAACATTATGGGAGGTGTCTTTGGGGCCTTTTCTGTCGCAAGCTGGGTGCCGTGTCTCTGTAGCAGTGCGACATGCTTGCTGTGCAGGTGCTGTCCCCAGAGCAAGAACTCCACGGTGACGCGAGTCATCTACGCCTTCATCCTGTTGCTAGGGACCATTATAGCCTGCATCATGCTGTCACCGGGAGTGGACAAGCAGCTAAAAAAGATTCCTGGGTTCTGTGAAGACGGAGCAGGCTCTTCTATCCCAGGAATTCATGCCAACATGAACTgtgagatctttgtgggctataaaGCCGTGTACCGGGTGTGCTTCGGCATGAGCATGTGTTTCCTGGTGTTCGCTCTGATTATGATCAACGTCAAGAACAGCCGAGACCCACGCTCTGCCATCCACAACGGGTTTTGGTTTTTTAAGATTGCCACCATGGTTGCAGTGACAGTCGGTGCCTTTTATATCCCTGAGGGGCCTTTCACTCACCtgtggttcGTGGTGGGTACCTGTGGGGCGTTCTTCTTCATCCTGATCCAGCTGGTTCTGCTGGTGGATTTTGCCCACTCCTGGAATGAGTCCTGGGTGGATAACATGGAGAGTGGGAACTCCAGGGGCTGGTATGCAGCCTTACTCGCTGTAACTGGACTCAACTACATCATGTCATTTATCGCCGTTGTCCTGATGTACCTGTTCTACACTCAGTCAAAGGGCTGTCTGCTCAACAAGTTCTTCATCAGCTTCAACATGATTCTCTGTGCTGTAGCCTCTGTCGTGTCCATCCTGCCCAGAGTACAGAAATTCCAGCCCCGATCCGGTCTACTCCAGTCCTCCTTCATGACTATGTACACCATGTATCTGACCTGGTCGGCCATGACCAACGAGCCTGACCGTACATGCAACCCCAGCCTGCTGAGCATCTTCCAGCAGACACTGGTGCCCACACTGGCCCCACTGGAGATCGAGAACCAGACGACTGTGGTGATCATCGGCAATGAAGagcccatcctctcctccccctatctgCAGTGGTGGGACACCCAGAGCATTGTGGGATTGACCATCTTCATCCTCTGCATCCTCTATTCCAGCATCCGCTCGTCCAACACCAGCCAGGTGAACAAGTTAACCATGGCCTCTAACGACACAGTGATCCAGGAGGAGAGTAAAGCAGGCACCCCGGACGAGGAGGGAGGGACGGGACCCAGGCGTGTGGAGGATAACGAGAGGGACACGGTCCAGTACAGCTATTTCTTCTTCCACTTCATGCTCTTCCTCGCTTCGCTCTACATCATGATGACTCTCACCAACTGGTACAGTCCTGATGCAGACTACAATGCCATGACCAGCAAGTGGCCGGCGGTTTGGGTGAAGATCTCCTCCAGTTGGGTATGCCTTACCCTCTATACCTGGACCGTGGTCGCCCCGATGATACTCACCAACCGGGACTTTAGCTGAGAACAGTTCCACCAACGCAGTATTTTCTTTTCACTTTCCTTATTGTGATTCCTgatttagtaaaaaaaaaaaaaaaaaaaaaaagaaagtgtgTTTTACATAGACATTGACCACATGGCTTAGATTTCAAATGATTTCCTGTCAAAATGACCTGTTTTGTTTTGTGTATTAGATGTTGATGGGTTCTCATTAAAAAATCTCTTTAGTTAGCCTTTTAGATGCATTAGAAGAAATAGATTCACATATGAACCTGGTGTTAAATCGCTAACCTTGTTGGTGCATTTGAAGATTGACAGATGTGTTTTTTGGTCAATTTTGTGCAATTAGGGACCAAATCGTGTATTGATGGTTGACCTTTATGTCACAGGAACAGTTTTACATGTTCCTTGTTTTTGTTGTACATTCTCTCAATGTACATTCATCTTTGACTGACTAACATTCCAAACCAACTATAAGAATGTAAGATCCTTTATCTCTTGagtaaatatacactgagtataccaaacattaggaacaccttcctaatactaatactaataccttc

Function

NR:

description
serine incorporator 3-like

GO: NA

KEGG:

id description
K23544 SERINC1_3; serine incorporator 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610640.2 True 3817 mRNA 0.45 12 77121611 77145722

Neighbor

gene id symbol gene type direction distance location
LOC110528526 NA coding downstream 9684 77106141 ~ 77111927 (-)
LOC118965366 LOC106565264 coding downstream 31238 77088808 ~ 77090373 (-)
LOC110528518 NA coding downstream 114468 77006314 ~ 77007143 (-)
LOC110529031 LOC106583629 coding downstream 142456 76793582 ~ 76979155 (-)
LOC110528515 LOC106583630 coding downstream 328462 76739000 ~ 76793149 (-)
LOC110528532 fndc11 coding upstream 41941 77187663 ~ 77197139 (-)
LOC110529033 LOC106583621 coding upstream 72338 77218060 ~ 77231065 (-)
helz2a helz2 coding upstream 104230 77249952 ~ 77275885 (-)
LOC118965318 NA coding upstream 155738 77301460 ~ 77304319 (-)
LOC110528536 arfrp1 coding upstream 203356 77349078 ~ 77355461 (-)
G649783 NA non-coding downstream 5361 77115169 ~ 77116250 (-)
G649762 NA non-coding downstream 42912 77077732 ~ 77078699 (-)
G649752 NA non-coding downstream 62040 77059371 ~ 77059571 (-)
G649739 NA non-coding downstream 67873 77036979 ~ 77053738 (-)
G649736 NA non-coding downstream 90788 77030354 ~ 77030823 (-)
G649806 NA non-coding upstream 2757 77148479 ~ 77148736 (-)
G649808 NA non-coding upstream 3667 77149389 ~ 77149609 (-)
G649810 LOC107756720 non-coding upstream 5700 77151422 ~ 77152847 (-)
G649815 NA non-coding upstream 12704 77158426 ~ 77158650 (-)
G649823 NA non-coding upstream 20655 77166377 ~ 77166655 (-)
G649684 LOC100136508 other downstream 105010 77009249 ~ 77016601 (-)
G649327 LOC106583642 other downstream 900680 76214701 ~ 76220931 (-)
G649025 NA other downstream 1500674 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 2013695 75106897 ~ 75107924 (-)
G646073 NA other downstream 3310154 73810902 ~ 73811457 (-)
LOC110529034 LOC106583646 other upstream 236945 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 883522 78029244 ~ 78029753 (-)
G650763 NA other upstream 897577 78043299 ~ 78046469 (-)
eya2 LOC106583664 other upstream 1130426 78209092 ~ 78312601 (-)
G652578 ncoa5 other upstream 2308353 79454075 ~ 79457103 (-)

Expression


Co-expression Network