LOC110528536 (arfrp1)


Basic Information

Item Value
gene id LOC110528536
gene name arfrp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77349078 ~ 77355461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610649.2
ACAAGTCCCACAATGCATTGCTTTCGTGCCTTCATACATTCAGGTGGCCACCGTGTTTACTAAAATGAGACTAGATAAAATACGATACCGCTGTCAAAGTAAATATAGCATGATGTCATGTTGTTGAGATAGCTAGCGTGCCCTTGATCTCCTTTTGCGATTTGTGAGTTGCTGAAATTGTCCGCTAGCAAATATCGGTTTATACTCGTCAGCGGCATTAACGAGATATACAGCTATAAAAGTTAGCATTAGCAAGCTACTGTAGTTAGCCAAGTATTTATGCCTTGATTGGCGCATTAGTTATATTTTACTTTAGTGTTTGGTGTCAAGTCAGCTAGCTAGTATCGATTACGAActagtaacgttagctaacttgcTTGCTTCAAACcacaggtaacgttagctagctaaacagctaGTCAGGTAACAGTTAGCTAATTCGACTTGCTAACTCTGGCTAGCCTCACAGCTGGATCTTTCCACGATGTGAGTTGGTGCTCGCCTTGCGCCTAAgctagtgtttgtttacaatccTAAGATGTACACCTTATTATCTGGTCTGTACAAATACGTGTTCCAGAAGGACGAATACTGCATCTTGATCCTAGGACTGGACAATGCAGGAAAAACGaccttTCTGGAACAGACTAAGACCAAGTTCAGTAAGAACTACAAGGGAATGAATTTGTCCAAAATCACCACTACAGTTGGGCTTAACATCGGCACAATTGATGTGGGCAAGGCTCGTCTAATGTTCTGGGACCTTGGTGGTCAAGAGGAGCTTCAGTCGCTGTGGGACAAATACTATGCTGAGTCCCACGGAGTGATCTATGTGATAGACTCCACCGATGAGGAGCGCCTATCAGAATCAAAAGAGGCCTTTGAGAAAATGATCAGCAGTGAGGTTTTGGAAGGTGTGCCTCTCCTGGTGCTCGCCAACAAGCAGGATGTGGAGAACTGCATGTCTGTGCCAGACATCAAAACTGCTTTTAGCGACTGTGCTCCAAAGATTGGGAAAAGAGATTGCCTGGTGCAGCCTTGCACAGCCCTAACAGGGCAGGGGGTTAACGAAGGCATTGAGTGGATGGTGAAGTGCGTCATCAGAAACATTCACCGGACACCGAGACAGAAGGACATCACATAGAACAAGCCATGACCTTCCCAACTCCAGAGCTCCCACAACCAGGAGGTATTCATTTGCCACCAAATGgtagaaaacagactgaaacaaggAGGGACTATATGGACTTACTGTCTAATATGAACCGTTTTCGATTGAAATGCAACCTTAATGAATACGAACGACCCAGGTGTCCCTTTTACTACAATGTGACTTCCAGAAACCGTGATGAACCCTACCCTCTAGCCCCGGCTCCATGTCCTCTTATTTGGGTGCTCTGAACTAATTTAGTTTTCAGATGCAGCTTAGCGTCAAGGGGATACAATTGGGGAAACAATTGATTATTGTGTATTATTTGGTTATGTACCTTGAGGTGTAAAGCTTTTGAAGGCTTTTTCCTTTTGGCCTCAGCTAATGTGTGTCTTTCTGATCAAACTATTATAGTGTCATCGTGTCGTTAGTTTCTCCCTGGCTCTTAAGTACCTCCCTTCGGTAATATAATTCCAGGACCtctattcataaagcatctctgaataggagtactgatctaggatcagtttagccttttagatcataaagAATCAGATTTATATGGATTATATTACTCTCAACCCAATTAGGCTTAGTAGTCTCATTTAACGGTCAAGAGGATGAAACATGACAACTTTATGATTCATATTATGCAACGACACTACATGTAATGGAATTGTACATTGTAACAGAGGGTCAACGATATATTCATAGACGGGAAATACTAGTTTTCGAGTTTGCAATGCCgtgtgtggtgtttgtgtatggttgagtaccaaatggcaccccatagtgctctggtcaatagtagtgcactgtatagggaataggatgccatttgggacacgccCTCTCTTTTTACTCGGTCAGTCTAACCTTGGTGACATATGTAAAGTAATGCCGATGATCAGGCGGAAAACTTATTTTAATTACAGTATGAAGAAGATTATgtaataaacatttcagaacagtTAACT
>XM_036984109.1
TCTCTGGGCTAAAGCCAACCCAGAGGAGGGCGACCCGCTCATAGTGTGCTGAAGAGGAAGCTCTGGCCAGGACGATCCTGAGAAGattcgaaaatgctaattagcatcaaagtagatatcatgcaagactacaaatccctgcaagctcctgcacgttcTCTCCGGCTGACACCTTTGTTAACAGaccttTCTGGAACAGACTAAGACCAAGTTCAGTAAGAACTACAAGGGAATGAATTTGTCCAAAATCACCACTACAGTTGGGCTTAACATCGGCACAATTGATGTGGGCAAGGCTCGTCTAATGTTCTGGGACCTTGGTGGTCAAGAGGAGCTTCAGTCGCTGTGGGACAAATACTATGCTGAGTCCCACGGAGTGATCTATGTGATAGACTCCACCGATGAGGAGCGCCTATCAGAATCAAAAGAGGCCTTTGAGAAAATGATCAGCAGTGAGGTTTTGGAAGGTGTGCCTCTCCTGGTGCTCGCCAACAAGCAGGATGTGGAGAACTGCATGTCTGTGCCAGACATCAAAACTGCTTTTAGCGACTGTGCTCCAAAGATTGGGAAAAGAGATTGCCTGGTGCAGCCTTGCACAGCCCTAACAGGGCAGGGGGTTAACGAAGGCATTGAGTGGATGGTGAAGTGCGTCATCAGAAACATTCACCGGACACCGAGACAGAAGGACATCACATAGAACAAGCCATGACCTTCCCAACTCCAGAGCTCCCACAACCAGGAGGTATTCATTTGCCACCAAATGgtagaaaacagactgaaacaaggAGGGACTATATGGACTTACTGTCTAATATGAACCGTTTTCGATTGAAATGCAACCTTAATGAATACGAACGACCCAGGTGTCCCTTTTACTACAATGTGACTTCCAGAAACCGTGATGAACCCTACCCTCTAGCCCCGGCTCCATGTCCTCTTATTTGGGTGCTCTGAACTAATTTAGTTTTCAGATGCAGCTTAGCGTCAAGGGGATACAATTGGGGAAACAATTGATTATTGTGTATTATTTGGTTATGTACCTTGAGGTGTAAAGCTTTTGAAGGCTTTTTCCTTTTGGCCTCAGCTAATGTGTGTCTTTCTGATCAAACTATTATAGTGTCATCGTGTCGTTAGTTTCTCCCTGGCTCTTAAGTACCTCCCTTCGGTAATATAATTCCAGGACCtctattcataaagcatctctgaataggagtactgatctaggatcagtttagccttttagatcataaagAATCAGATTTATATGGATTATATTACTCTCAACCCAATTAGGCTTAGTAGTCTCATTTAACGGTCAAGAGGATGAAACATGACAACTTTATGATTCATATTATGCAACGACACTACATGTAATGGAATTGTACATTGTAACAGAGGGTCAACGATATATTCATAGACGGGAAATACTAGTTTTCGAGTTTGCAATGCCgtgtgtggtgtttgtgtatggttgagtaccaaatggcaccccatagtgctctggtcaatagtagtgcactgtatagggaataggatgccatttgggacacgccCTCTCTTTTTACTCGGTCAGTCTAACCTTGGTGACATATGTAAAGTAATGCCGATGATCAGGCGGAAAACTTATTTTAATTACAGTATGAAGAAGATTATgtaataaacatttcagaacagtTAACT
>XM_036984108.1
GAGACCCAACTATAGGTACTGAGTGCATTGGTAGGAGTCGTAAGGAGGGGTGTCTCTGGGCTAAAGCCAACCCAGAGGAGGGCGACCCGCTCATAGTGTGCTGAAGAGGAAGCTCTGGCCAGGACGATCCTGAGAAGaccttTCTGGAACAGACTAAGACCAAGTTCAGTAAGAACTACAAGGGAATGAATTTGTCCAAAATCACCACTACAGTTGGGCTTAACATCGGCACAATTGATGTGGGCAAGGCTCGTCTAATGTTCTGGGACCTTGGTGGTCAAGAGGAGCTTCAGTCGCTGTGGGACAAATACTATGCTGAGTCCCACGGAGTGATCTATGTGATAGACTCCACCGATGAGGAGCGCCTATCAGAATCAAAAGAGGCCTTTGAGAAAATGATCAGCAGTGAGGTTTTGGAAGGTGTGCCTCTCCTGGTGCTCGCCAACAAGCAGGATGTGGAGAACTGCATGTCTGTGCCAGACATCAAAACTGCTTTTAGCGACTGTGCTCCAAAGATTGGGAAAAGAGATTGCCTGGTGCAGCCTTGCACAGCCCTAACAGGGCAGGGGGTTAACGAAGGCATTGAGTGGATGGTGAAGTGCGTCATCAGAAACATTCACCGGACACCGAGACAGAAGGACATCACATAGAACAAGCCATGACCTTCCCAACTCCAGAGCTCCCACAACCAGGAGGTATTCATTTGCCACCAAATGgtagaaaacagactgaaacaaggAGGGACTATATGGACTTACTGTCTAATATGAACCGTTTTCGATTGAAATGCAACCTTAATGAATACGAACGACCCAGGTGTCCCTTTTACTACAATGTGACTTCCAGAAACCGTGATGAACCCTACCCTCTAGCCCCGGCTCCATGTCCTCTTATTTGGGTGCTCTGAACTAATTTAGTTTTCAGATGCAGCTTAGCGTCAAGGGGATACAATTGGGGAAACAATTGATTATTGTGTATTATTTGGTTATGTACCTTGAGGTGTAAAGCTTTTGAAGGCTTTTTCCTTTTGGCCTCAGCTAATGTGTGTCTTTCTGATCAAACTATTATAGTGTCATCGTGTCGTTAGTTTCTCCCTGGCTCTTAAGTACCTCCCTTCGGTAATATAATTCCAGGACCtctattcataaagcatctctgaataggagtactgatctaggatcagtttagccttttagatcataaagAATCAGATTTATATGGATTATATTACTCTCAACCCAATTAGGCTTAGTAGTCTCATTTAACGGTCAAGAGGATGAAACATGACAACTTTATGATTCATATTATGCAACGACACTACATGTAATGGAATTGTACATTGTAACAGAGGGTCAACGATATATTCATAGACGGGAAATACTAGTTTTCGAGTTTGCAATGCCgtgtgtggtgtttgtgtatggttgagtaccaaatggcaccccatagtgctctggtcaatagtagtgcactgtatagggaataggatgccatttgggacacgccCTCTCTTTTTACTCGGTCAGTCTAACCTTGGTGACATATGTAAAGTAATGCCGATGATCAGGCGGAAAACTTATTTTAATTACAGTATGAAGAAGATTATgtaataaacatttcagaacagtTAACT
>XM_036984110.1
CAACAAGTCCCACAATGCATTGCTTTCGTGCCTTCATACATTCAGGTGGCCACCGTGTTTACTAAAATGAGACTAGATAAAATACGATACCGCTGTCAAAGTAAATATAGCATGATGTCATGTTGTTGAGATAGCTAGCGTGCCCTTGATCTCCTTTTGCGATTTGTGAGTTGCTGAAATTGTCCGCTAGCAAATATCGGTTTATACTCGTCAGCGGCATTAACGAGATATACAGCTATAAAAGTTAGCATTAGCAAGCTACTGTAGTTAGCCAAGTATTTATGCCTTGATTGGCGCATTAGTTATATTTTACTTTAGTGTTTGGTGTCAAGTCAGCTAGCTAGTATCGATTACGAActagtaacgttagctaacttgcTTGCTTCAAACcacaggtaacgttagctagctaaacagctaGTCAGGTAACAGTTAGCTAATTCGACTTGCTAACTCTGGCTAGCCTCACAGCTGGATCTTTCCACGATGTGAGTTGGTGCTCGCCTTGCGCCTAAgctagtgtttgtttacaatccTAAGATGTACACCTTATTATCTGGTCTGTACAAATACGTGTTCCAGAAGGACGAATACTGCATCTTGATCCTAGGACTGGACAATGCAGGAAAAACGaccttTCTGGAACAGACTAAGACCAAGTTCAGTAAGAACTACAAGGGAATGAATTTGTCCAAAATCACCACTACAGTTGGGCTTAACATCGGCACAATTGATGTGGGCAAGGCTCGTCTAATGTTCTGGGACCTTGGTGGTCAAGAGGAGCTTCAGTCGCTGTGGGACAAATACTATGCTGAGTCCCACGGAGTGATCTATGTGATAGACTCCACCGATGAGGAGCGCCTATCAGAATCAAAAGAGGCCTTTGAGAAAATGATCAGCAGTGAGGTTTTGGAAGGTGTGCCTCTCCTGGTGCTCGCCAACAAGCAGGATGTGGAGGCAGGGGGTTAACGAAGGCATTGAGTGGATGGTGAAGTGCGTCATCAGAAACATTCACCGGACACCGAGACAGAAGGACATCACATAGAACAAGCCATGACCTTCCCAACTCCAGAGCTCCCACAACCAGGAGGTATTCATTTGCCACCAAATGgtagaaaacagactgaaacaaggAGGGACTATATGGACTTACTGTCTAATATGAACCGTTTTCGATTGAAATGCAACCTTAATGAATACGAACGACCCAGGTGTCCCTTTTACTACAATGTGACTTCCAGAAACCGTGATGAACCCTACCCTCTAGCCCCGGCTCCATGTCCTCTTATTTGGGTGCTCTGAACTAATTTAGTTTTCAGATGCAGCTTAGCGTCAAGGGGATACAATTGGGGAAACAATTGATTATTGTGTATTATTTGGTTATGTACCTTGAGGTGTAAAGCTTTTGAAGGCTTTTTCCTTTTGGCCTCAGCTAATGTGTGTCTTTCTGATCAAACTATTATAGTGTCATCGT

Function

symbol description
arfrp1 Predicted to enable GTP binding activity. Predicted to be involved in Golgi to plasma membrane protein transport; intracellular protein transport; and protein localization to organelle. Predicted to be active in Golgi apparatus. Orthologous to human ARFRP1 (ADP ribosylation factor related protein 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07952 ARFRP1; ADP-ribosylation factor related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610649.2 False 2127 mRNA 0.42 7 77349078 77354314
XM_036984109.1 False 1680 mRNA 0.44 8 77349078 77355409
XM_036984108.1 False 1633 mRNA 0.44 7 77349078 77355461
XM_036984110.1 True 1474 mRNA 0.44 6 77349632 77354316

Neighbor

gene id symbol gene type direction distance location
LOC118965318 NA coding downstream 44759 77301460 ~ 77304319 (-)
helz2a helz2 coding downstream 73193 77249952 ~ 77275885 (-)
LOC110529033 LOC106583621 coding downstream 118013 77218060 ~ 77231065 (-)
LOC110528532 fndc11 coding downstream 151939 77187663 ~ 77197139 (-)
si:ch73-267c23.10 LOC106583622 coding downstream 203356 77121611 ~ 77145722 (-)
LOC110529034 LOC106583646 coding upstream 25293 77380754 ~ 77390369 (-)
LOC110528538 LOC106583648 coding upstream 49427 77404888 ~ 77463817 (-)
LOC110528539 LOC106583647 coding upstream 117242 77472703 ~ 77527363 (-)
LOC110528541 snta1 coding upstream 519151 77874612 ~ 77948295 (-)
necab3 necab3 coding upstream 720048 78075509 ~ 78130470 (-)
G649978 LOC106583651 non-coding downstream 5001 77288367 ~ 77344077 (-)
G649997 NA non-coding downstream 136771 77211931 ~ 77212307 (-)
G649994 NA non-coding downstream 142337 77205121 ~ 77206741 (-)
G649991 NA non-coding downstream 146344 77202394 ~ 77202734 (-)
G649985 NA non-coding downstream 153193 77195544 ~ 77195885 (-)
G650044 NA non-coding upstream 23995 77379456 ~ 77380682 (-)
G650057 NA non-coding upstream 46101 77401562 ~ 77401987 (-)
G650058 NA non-coding upstream 55931 77411392 ~ 77411620 (-)
G650062 NA non-coding upstream 59563 77415024 ~ 77415235 (-)
G649684 LOC100136508 other downstream 332477 77009249 ~ 77016601 (-)
G649327 LOC106583642 other downstream 1128147 76214701 ~ 76220931 (-)
G649025 NA other downstream 1728141 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 2241162 75106897 ~ 75107924 (-)
G646073 NA other downstream 3537621 73810902 ~ 73811457 (-)
G650755 cbfa2t2 other upstream 673783 78029244 ~ 78029753 (-)
G650763 NA other upstream 687838 78043299 ~ 78046469 (-)
eya2 LOC106583664 other upstream 920687 78209092 ~ 78312601 (-)
G652578 ncoa5 other upstream 2098614 79454075 ~ 79457103 (-)

Expression


Co-expression Network