znfx1 (LOC106583673)


Basic Information

Item Value
gene id znfx1
gene name LOC106583673
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 79262052 ~ 79275120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610676.2
gggaggaagaggaagaggaggaggcagaggaggagggagaggaggagatggagagagagggggagggagaggaagagctgCAGATGGTGGCGCTCCTCATGTTCGTCCAATGGGGTACAAAACGTTGGAGGAGCTCTCCGGGAAAGAACCTTCAGAAATAGCCATTACTCTTGCCTCCAGTTATGGACTGCAAGCTCTACTCGACGAACGAGAGATGCGAAAGGACCTCGTTCAGCTCCTCTGCCAAGTCCTCTGCAAGGCCTTCTTGTCCAAAACTGACCGTCAAACTATACAGCACTTGGCTGGCTTAATCAAGCATTCTGGATTCCTCCGAACCATCCTGCCCCATTATGTGATGGGAATGGGGTCAGAGTTCGACCTCACTCGCCGGGAACAGTACCCCCAGCACTTGGACAACATCATGACCCTTCTCGCTGAGGTGCTCAGGATATTCCCGGCTAGCTCGACCCAGGCCGTGTCCATGATAGTGGCCCTCTTCAGACCAGTCATCAACAGCCTGCGAGCTGTGGGGGTGGATGTCCTGGAGCAGACGGAGGAAAACCTGGAGAGGATCCAGGTCCTGGTGGAGCACCTCCaggagagggccagggagggCACCCTAAAGTCAGACAACTACTCCTTCATCACCCCCCAGGAGGACGCCCCACTTGGGGAGGCCGACTTCAGGACCCTATCCATCTACCCCACCCCTGAGGAGTTCCACCAGGAACAGAGGCCCTTCCTCAGGCCCAACCTCATCTTGAAACGCTATGCCAGCGGACTGCTGTACCTGGACACGCACTTCCGGCTCATGCGAGAGGACTTTGTGAGACCTCTTCGAGAGGGCATCCAGCAGCTGCTTCAGAGCCAGCAGGACCTGGGCAATAAAGACGTCCCTTTGAGGAAGAGGCGCTTCGATGACATCACAGTGTACTTTGACACGCGACTGGTGGTTCCGATGTGCACCCGGTCTGGTTTGGCCTATAAGGTCCAGTTTGACTCCAAACCTCTTAAGTTTGTCCGCTGGCAGAACTCCAAGCGGCTGATATATGGGTCCCTGGTCTGCATGTCCTGTGACAACTTTGAGAGTTTCCTGTTTGCCACTGTGTCCGACCGGGACCCCAAGGAGCTAGAGAAGGGCTTTGTCCAGATCATTTTCTCAACGGAGAGCAGGCGAGCCCTAGCCGGAGTGGAGGCCCACCAGTCCTTCCTCATGGTGGAGACAACCGCCTACTTTGAGGCCTACCGCTATGTCCTCGAGGGGCTGCAGGAGCTGGAAGTAGAGGATCTGCCCTTCCAGAGGTATATAGTGGAATGTAGCTCAGAGGTCCACCCTCCTGCCTACCTGCCAATGGGGGATACATATGACCTGTCTGCTATTGCGGTGCCTGAGTTTAAGAGCAGCCGCTTCCACACCCTGGATCCTGAAGCCTGGCCCCCCATGGAGCAGCTGGGATTGGACGAGTCCCAGATGAGAGCACTTCAGCTTGCCCTCACCAAGGAGCTGGCAATCATCCAGGGACCCCCAGGCACAGGGAAGACCTACACAGGACTAAAGATCGCCCAagctcttttgaccaatcaggagGTGTGGAAAGGTGTCTTTGACTCCTCCCCAATGCTGGTGGTTTGTTATACCAACCACGCTCTAGACCAGTTCCTGGAAGGCATCCACAAGTTTTTACCAGACGGTATTGTAAGAGTGGGTGGGCGAAGCAACAGTGAGGCCCTGAAGCGTTTCACTCTGGGGGAGCTGAAAAGGTCCCATGACTTCCGCCGCAGACTACCGCAACATCTTCGCCGTGCCAACAGTGAGATCTATGATGCACTGCGGACCGAAGAGACTAAGATCCAGACTCAGTCTGTGCAGCTGGAGTGCAGTCTGCGAGGCGTTCTAAGGGAACAGTTCCTTCAAAGGTTCATCTCAGAGGTGCACTGGGATAGCCTGTCCCTCCAGCCTGCACTGGATGGTTTTGAGAGCTATGGTGGGAAGAAGCCGTCTATGATAATGGAGTGGCTGGGGTTAGGTTCCACTGCCTTCCAGCAGAGGACACCATATCCTCAAAATGACAATGCAGATGGGGAAATGgacgaagatgaggaggaggaggaggacctgatcgAGATAGCGGAGGAGGCAGACCTGATCCAGATGGAACGCTTTGTAGAAGTCTCAGACATGCATCATAGTCACGATGATGATCGAAGAAAGATGGAGGAGACAGTCAGGGATATGGCGGAAATGATGCTGGCCATGAACCTGGAGAACACTCTGATACATGCAGAGCAGAGTGAAGAAGGCTGGGAGATACAGCGGGTGCAGAAGAGGAAGATGAAACATCGTATTAGGAGAGAGCTGGGCAGCAGCTCAGCCATGAGTGAAGATGAGGAAGACACCATTCTGGATGTGTGGACTCTTAGTCTGCCAGACAGATGGAGACTGTACCGGTTATGGGTGGGGCGTTATCGGACGGAGCTGCGTATGCGAGCCCAGCAGGCAGAGCAGGACTATCAGGATGCTGCCGAGCGTCTGGCTGAGATTCGTCTCCGTGAGGACTTATGTGTCCTGAAGGAAGCCAAGGTCATCGGCATGACGACCACGGGGGCTGCTAGATGGCGCAAAGCTTTGCAGGAAGTGCGCCCCCGCCTAGTGATCGTGGAAGAGGCAGCAGAGGTACTGGAGGCCCACACCATCACCACTCTGAGCCAGGCCTGCCAGCACCTCATTCTCATTGGAGACCACCAACAGCTCCGGCCCAGTGCAACAGTGTTCGAACTGGCCAAGAACTTCAATCTTGAAGTGTCCATGTTTGAGAGGCTGATCAGGATGGACTTTCCATACGTCAGACTTAACTACCAGCATCGCATGAGGCCAGACATTGCCCGTCTCCTGGTCCCGCACATCTACTCTGAGCTAGAGAACCACCCCTCAGTGATGGACTATGACAATATTAAGggtctTCTCTCCAACATGTTCTTTGTGGAGCATAACTACCCGGAGGAGGAGATCAGGGATGGAAAGAGTCGCCAGAACCTCCACGAGGCCTTCTTTGTGGTAGCGTTGTGTCGCTACCTCCTGTTACAGGAATACCAGCCGTCCCAGATCACCATCCTCACCACTTACACTGGCCAACTCCACTGTCTGCGCAAACTCATGccagccaaagagttcaatgggGTAAAAGTTCATGTTGTTGACAAATACCAAGGAGAGGAGAATGATATTGTCCTGCTGTCGCTGGTTCGAAGTAACAAAGAGGGGAAGGTGGGCTTCTTGAACATCCCCAACCGCGTCTGTGTGGCCCTGTCACGGGCTAAGAAGGGTCTCTACTGCGTTGGAAACATGGCCATGTTGGGAAAAGTCAAGCTTTGGAGCAACATCCTGCACACACTGCGAGAGAAAGACCAAGTGGGCCCTGCCCTGACCCTGTGCTGCCAGAACCACCCTGAGCGACACATTAAAGCATTCTGCGGCGACGACTTCAAACATGCTCCTGAGGGAGGCTGCAACCTGCCCTGCGAGTTCCGCTTGAACTGTGGTCACGTGTGCTCCAGTGCTTGCCACCCATACGACCAAGAGCACAAGAAGTACACATGTAACAAGAAGTGCCAGAAGGTCCTCTGTGAGCTGGGGCATCGATGCAAACTTCTGTGCTACAAGAAGTGCCCTACAGACTGCCTTACGCGGGTAGAGAAAATCGTACCGCGATGCCAGCACAAGCAGATGGTGCCCTGTCACCAGGCTCCAGAGCGGTTTGTGTGCCAGGAGCCCTGTCAGAAGATGCTGGTGTGTGGCCATCTATGTGCCACTGTGTGTGGGGAGTCCTGCACCACCACCTGCATGGCAACAGTCACCTTGGAGCTCAAGTGTGGACACAAGCAAGAAGGTCCCTGTCATAATAGGAGATCTACAGTACAGCCGGACTGCAGGGCACCTTGCAAACAGATTCTGAAGTGTGGCCACCCCTGTCCTGGTTCCTGCCAGAGATGCCACCAGGGCCGCTTCCACTTGGGCTGTTTCCACCGATGTGATAAGCTCCTAGTCTGCTCCCACAAGTGTCGGGAGCCCTGTACACGTGACTGCCCTTCCTGTCCAATTCTCTGTGAGAATCGCTGCATCCACAGTGCCTGTAAGAAGCCCTGCGGCCAGCcctgtgccccctgtatagagccctGTGCCTGGCAGTGTCCTCACCAGGGCTGCAGCAAGCTCTGCCATGAGCCTTGTGACCGTCCACCCTGCACCCAGCCCTGCACCAAAACCTTGCAGTGTGGGCACCCCTGCATCGGCCTGTGTGGAGACCCCTGCCCCAACAAGTGCCGTGTTTGCCACCCCGAGGATGTTATGGAGATCTTCTTTGGTACGGAGGACGATGCTGAGGCCTGCTTTATTCAGCTGGACGACTGCGGACACGTCTTTGAGTCCACGTCCATGGATAAATACATGGGGATGGATGACAACCAGCAGGCTACCGAGGAGCAGCTCGCAGTAAAGTTGAAGGAGTGCCCCAGGTGTCGCACTCCCATCCGCAGGAATCTCCGGTACGGGGCTTACGTCAACCGGAGTCTGGCGGTAATTGAGAAAGTTAAGGAGAAGATTAATGGAGCACAGTCAGATATTGCGGCACAAAAGGCGATCCTTAAGCAGCAATGGATTGACAAGGAGGACTTGCAAAGGTATCTACCAATGGAGTACATACAGATCGAGAAAAAACTAAGGGCCTCCCACCTCACAGCTAAGGAACTGTGGATCACGGAAAACAAGATGGCCTTCCTTGAGAGAGTTGGCAAGTTGCTGAAGATTAGTAGGCAGCACATGTCAAGTGCGGAAGTTTCCCACTTTGATGAGAAAGTCGAAGAGTTCCTGAGGTGGCTGATGGATTGTTACCAGAAGTTCTCGGAGCAGCAGGCTTCTGATCTGCAGAGCGAGCTACAGAGGCTGTCCTTTTTGGCCGAGCTCAACGCCCGCTGCAAGATGGCTAAGGACACAGGTCGTGGGGTCAAGGTTCAGGCTGAGGTCACAGCCATAAGGGAGGTTCTGGAGAAAATGCAGCCATTCACTCTGCAAGACGAGGACTCAGTAAAGCAGGCACTGAAAGACTTGGCTGAAAAGCTACCAAGCTCTGGCCTGGGGATCAGTGATGATGAACGAAAGATGATACTTTCAGCCATGAGTTTGCCTAAAGGCCACTGGTACTCCTGCCCCAACGGTCACGTCTATGCCATCGGAGATTGTGGAGGTGCCATGATGAGCCGTAACTGCCCAGAGTGCAATGCTACGATCGGTGGAGCAAACCATGCTCTGGTAAGTGGCAACAGAGTGGCTTCAGAGATGGATGGGGCACAACACGCTGCGTGGTCTGAAGCTAACAATATGCTGAACTTTGGTCTGGTGAACCTTGCTGATTAAaaactgattattttctctgTTTAATTGTGACTTCATGACCGATGTGACAATTATCATAATTTGCACTCCAGAAAGCGTTGCTATATCAATTGATATATTTAAATGCTGAAATCACTGTAAATGATTCATTGAATGTGATGAAATCAATCTGCTTTGTCAATATAATATTTATTGTTATTCTACTTTTTAAAGTGATATCACTCCAGAGTACAATACTGTATTTTCAACCCAATGTACAATTATGAATTATGCAAATGTTTAGGCAGGATTTTTGGGCCTCAACATTTAgacacctgtgtgtatttttccAGTCACAccaatagatggcagcagtgtattgTTCATTTAACAAAGAGTTGGCTTGATATGTGCAATATGTTTTTTCTAATAAAACATATTTGAGATGATCCCA

Function

NR:

description
NFX1-type zinc finger-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610676.2 True 5822 mRNA 0.53 13 79262052 79275120

Neighbor

gene id symbol gene type direction distance location
LOC110528552 cdh22 coding downstream 145788 78846274 ~ 79116264 (-)
LOC110527149 NA coding downstream 689245 78569709 ~ 78572807 (-)
gcnt7 LOC106583665 coding downstream 837931 78410565 ~ 78424121 (-)
eya2 LOC106583664 coding downstream 949451 78209092 ~ 78312601 (-)
necab3 necab3 coding downstream 1131582 78075509 ~ 78130470 (-)
LOC110528554 NA coding upstream 131 79275251 ~ 79277209 (-)
ddx27 ddx27 coding upstream 4279 79279399 ~ 79301866 (-)
snrpb snrpb coding upstream 33113 79308233 ~ 79311901 (-)
ube2c ube2c coding upstream 67162 79342282 ~ 79346292 (-)
LOC110528560 dnttip1 coding upstream 71524 79346644 ~ 79358639 (-)
G652268 LOC106604946 non-coding downstream 37731 79224048 ~ 79224321 (-)
G652266 NA non-coding downstream 40485 79221338 ~ 79221567 (-)
G652243 NA non-coding downstream 74499 79187339 ~ 79187553 (-)
G652093 NA non-coding downstream 97771 79163970 ~ 79164281 (-)
G652052 NA non-coding downstream 129714 79132139 ~ 79132338 (-)
G652314 NA non-coding upstream 46255 79321375 ~ 79321620 (-)
G652335 NA non-coding upstream 111811 79386931 ~ 79387396 (-)
G652578 ncoa5 non-coding upstream 178955 79454075 ~ 79457103 (-)
G652589 NA non-coding upstream 190327 79465447 ~ 79466226 (-)
G650763 NA other downstream 1215583 78043299 ~ 78046469 (-)
G650755 cbfa2t2 other downstream 1232299 78029244 ~ 78029753 (-)
LOC110529034 LOC106583646 other downstream 1879116 77380754 ~ 77390369 (-)
G649684 LOC100136508 other downstream 2245451 77009249 ~ 77016601 (-)
G653015 NA other upstream 668081 79943201 ~ 79943728 (-)
rab22a rab22a other upstream 750840 80025960 ~ 80046659 (-)
G653274 NA other upstream 1070682 80345802 ~ 80347567 (-)
LOC110528585 LOC106583707 other upstream 1375470 80650590 ~ 80723518 (-)

Expression


Co-expression Network