LOC110528554


Basic Information

Item Value
gene id LOC110528554
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 79275251 ~ 79277209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474272.2
aggtaaaaagtacattattttctttaggaatgtagtgaagtaaaagttggcaataATATAAATTGTACAGATACACAAACTACTTAAGTCAAAATACTTGAAAGTGCTTCTTAAACTTTGCACAAATGCTCAATTGCTAcaacagagagagcgagccagtGCAGCGTTATGTATATCTTTTAACTTACGAAGTGTTTATGATTAGCCATAGTGACAAAAAAGAGCACCTTATTATTGCTCAATATGTATTTTCGTAAACATGAAAATTATCACTCAAAAAAATTGTACCAACAAGTAGGGCGTGTAGTTTCATTTCTGACTCACTTGCACTTCGTATCATTTTGCAAAGCGTAACGGGCAGCAGATCGATCACTCAAGTATTGTCAACATATTTTTACAAACAACAGGGCGTGTAGTTTCATTTCTGACTCACTTGCACTATGTACCATCTTGGAAAGCGAAACTGACAGCGAACAGGCCTGGGCCTGTTTAAAGAGCAGCTCGCGGAATTCCCCAACACTGATCCGCAGAGACGAGGACAGTAACAGAGCGAATCGTTACTGTCAACCAGACAACAAGGACTACAGAAATACGCGTATTTAAAAGTTTTATGTCATCTGCAATTGGACCCTAAATCCCATCAAAAATATTCACACGTCCAGCAAAGTGGACCAATAGTAATTCAGCCTGAATGGAAAACCCAAACAGgggcaggagaggtagaggagccAACCATGTCCATCACAGAATAGGTGCTGAGGCTGgtcagagagaagaggaagggataGCCAACCGAGGGGGAAGAGGTAGGGGggccaggggagagaggagaggtgttaaTGGGGGGAACCCAAGGGAGGATAGGAGAGCGCGAGATgccaggg
>TU741163
GCAGAGACGAGGACAGTAACAGAGCGAATCGTTACTGTCAACCAGACAACAAGGACTACAGAAATACGCGTATTTAAAAGTTTTATGTCATCTGCAATTGGACCCTAAATCCCATCAAAAATATTCACACGTCCAGCAAAGTGGACCAATAGTAATTCAGCCTGAATGGAAAACCCAAACAGgggcaggagaggtagaggagccAACCATGTCCATCACAGAATAGGTGCTGAGGCTGgtcagagagaagaggaagggataGCCAACCGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474272.2 False 884 mRNA 0.43 3 79275251 79277209
TU741163 True 272 lncRNA 0.46 3 79275337 79276683

Neighbor

gene id symbol gene type direction distance location
znfx1 LOC106583673 coding downstream 131 79262052 ~ 79275120 (-)
LOC110528552 cdh22 coding downstream 158987 78846274 ~ 79116264 (-)
LOC110527149 NA coding downstream 702444 78569709 ~ 78572807 (-)
gcnt7 LOC106583665 coding downstream 851130 78410565 ~ 78424121 (-)
eya2 LOC106583664 coding downstream 962650 78209092 ~ 78312601 (-)
ddx27 ddx27 coding upstream 2190 79279399 ~ 79301866 (-)
snrpb snrpb coding upstream 31024 79308233 ~ 79311901 (-)
ube2c ube2c coding upstream 65073 79342282 ~ 79346292 (-)
LOC110528560 dnttip1 coding upstream 69435 79346644 ~ 79358639 (-)
pcif1 LOC106583676 coding upstream 81835 79359044 ~ 79384929 (-)
G652268 LOC106604946 non-coding downstream 50930 79224048 ~ 79224321 (-)
G652266 NA non-coding downstream 53684 79221338 ~ 79221567 (-)
G652243 NA non-coding downstream 87698 79187339 ~ 79187553 (-)
G652093 NA non-coding downstream 110970 79163970 ~ 79164281 (-)
G652052 NA non-coding downstream 142913 79132139 ~ 79132338 (-)
G652314 NA non-coding upstream 44166 79321375 ~ 79321620 (-)
G652335 NA non-coding upstream 109722 79386931 ~ 79387396 (-)
G652578 ncoa5 non-coding upstream 176866 79454075 ~ 79457103 (-)
G652589 NA non-coding upstream 188238 79465447 ~ 79466226 (-)
G652597 NA non-coding upstream 201560 79478769 ~ 79481328 (-)
G650763 NA other downstream 1228782 78043299 ~ 78046469 (-)
G650755 cbfa2t2 other downstream 1245498 78029244 ~ 78029753 (-)
LOC110529034 LOC106583646 other downstream 1892315 77380754 ~ 77390369 (-)
G649684 LOC100136508 other downstream 2258650 77009249 ~ 77016601 (-)
G653015 NA other upstream 665992 79943201 ~ 79943728 (-)
rab22a rab22a other upstream 748751 80025960 ~ 80046659 (-)
G653274 NA other upstream 1068593 80345802 ~ 80347567 (-)
LOC110528585 LOC106583707 other upstream 1373381 80650590 ~ 80723518 (-)

Expression


Co-expression Network