ddx27 (ddx27)


Basic Information

Item Value
gene id ddx27
gene name ddx27
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 79279399 ~ 79301866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984157.1
GAAGACCGTACACTTCCTATTTTGGTACATACACGTGTTGGAACAGGCATCGATTCAACTGGTTAACACCGGCTATCTAGCATTGGGTAACCGAATCACTGTTTTCTTTGGAAATAAAGCTAGTTAACACGAACGGAACCATGCTATCAGATTTGGACCTGGTCGGGACAATTCAGGACCATGACGATGTGCCCGAGGAGCCTGATTCAGAGTCTGACGACGAAGATGAACAGCCAATAGTACTCAACAAGAAGAAGAAAGCGTTGAAGGGCCATGGCGCTGGGGATTTCAGCGCTGACTTTGAgtttggagagagggatggactcTACAGCGAGGACTGGGCTATGGCAGATGTGATGGCACAGCTGAAGAAGAGGAAAGCCCCCACCACCTTGGATGAAAAGATTGAGAAAGTACGCAAGAAGCGCAAAACAGAGGAGAAGGCAAAGACGACAGAAAAACCAGAGATTCCCTCAGAGgaagatgacgatgatgatgaggaggaggaggaggaggaagaagatgagAAACCTGATATAGCCGAAGATGGGGCTGAGGTATCCAATGACGAAGACCAGAGTGGTGATGATGGGGAGGAGTTTACATCAGGGGATGAAGAGGTTCTCACCAAAGCAGATACGGTGAGGGACAAAGGCAGAAAGAAGACAAAGGCAGAAGAGCCTCAAGAGGCCTTCTTTGAAGACGCCTCAAACTATGACGACAAACTCATGTTTCCCGACATGAACCTCTCCAGGCCTATTCTTAAGGCTATCACTGCTATGGGCTTCAAGCAGCCCACTCCCATCCAGAAGGCCTGTGTACCTGTGGGGCTTCTGGGCAAAGACATCTGTGCCTGCGCTGCTACTGGCACCGGTAAGACGGCAGCGTTCATGCTCCCTGTGCTGGAGCGTCTCATCTACAAGCCCAAACAGACCGCAGTGACCCGTGTGCTAGTCCTGGTGCCCACGCGTGAGCTGGGCATCCAGGTGCATGCCGTGGCCCGCCAGCTGGCCCAGTTCACAAGCATCACCACCTGCCTGGCCGTGGGGGGTCTGGACCTCAAATCCCAGGAGGTGGCATTGCGGATGGGCCCTGACGTCCTGATCGCAACGCCAGGTCGACTGATTGACCACCTGCACAACACGCCCTCTTTTGAGCTCAGCCAGATTGAGATCCTCATCCTGGACGAGGCTGACCGGATGCTGGACGAGTACTTTGAGGAGCAGATGAAGGAGATCATCAGGATGTGTGCCTACCAGAGACAGACCATGCTCTTCTCTGCCACCATGAGTGAAGAGgTGAAAGACTTGGCGTCGGTCTCTCTGAAGCAGCCGGTTCGTATCTTTGTGAACAGTAACACAGACGTGGCGCCCTACCTCAGACAGGAGTTTGTCAGGATCCGACCAgccagggaaggagacagggaggcTATTGTGGCCGCTCTGCTGACACGGACCTTCCAGGACCACGTGATGCTGTTCACCCAGACCAAGAAGCAAGCCCACCGGATGCACATCCTCCTGGGCCTGATGGGGCTGAAGGTGGGAGAGCTGCATGGGAACCTGTCCCAGACCCAGAGACTGGAGAGCCTCAGGCGGTTCAAAGATGAACAGATTGACATCCTTGTGGCCACAGACGTTGCGGCTAGAGGTCTGGATATCGATGGAGTCAAGACGGTGATTAACTTCACCATGCCCAACACAGTGAAGCACTACGTTCACAGGGTGGGTCGCACGGCCCGTGCCGGCAAGGTCGGTCGCTCTGTGTCCCTGGTGGGCGAGACTGAGAGGAAGATGCTAAAGGACATCGTCAGGAAGGCCAAGACCCCCGTGAAGGCCCGCGTCCTGCCACAAGAGGTGATTCTGAAGTTCAGAGACCTGATTGAGAAGCTGGAGAAGGACGTGTACGCCGTGATgcgtctggagagagaggagagggccatGTCTCACTCGGAGGCTCAGATCAGTGTGGCACAGAAGCGGCTGGCACAGAACGCAGACGAGACGGATCCAAAGAGGATGTGGTTCCAAACGCACGACGAACGCAAAAAAGACCGCATGACTAAAGCTCTGGAGCATCACTTTAACCTTTCACCCTTGTCTCTGCCAGTGACCAAAGCGCTGGCTGACTTTGACTTGGCCCTGAGAggaaaaaagaagagagagaagttcATCAAGGAGGGGAAAAAGAAAGAGTTATCGTCTGAGGATAGAGCAGAGTTTGAGGTCCTCAAGTCCCAGATGTACGCTGAGCGATCAGCCAAGAGGGACCGGAAACCCAAACGAGCCAGAGCCATGCCAGAGGACGAGCCTGTTCAGAAAGGTGCGAAACAGAAAGCTGGTAAACCAGCCAAGAAGTCTGTATTTGACAAAGAACTTACAAACACCAGTAAGAAAGCACTCAAGCAGTACAGAGCTGGACCCTCCTTTGAGGATAAGAAGAGGCTTGGAATTCCAACGAACAAGAAAGGAGGCGGTGGCTTCAAGTCCAAGGCCAAGTTTAGGAGAAAGTAAGAGCTGCCTTGATGGGAAAATGACAAGATATGCAATTTGGATGGATGGATTCACCTCCAGTGTGTCTTTTGTTTTGAGTGTCTGTCTTCCTAAATCAGTGCTTTCCCACTTTTCAGTGGGGGCATAATGGAAATAGACTGGAAAGGTTTTGGCTGAAATCCTTTCATTAGCCTCAGATTGCACTCTGCGTCCTCTCTTAGTTTTTATATGTCAGACCtacacacacgcaaacaaacaTACAGGTTGCAGTGTGTAACCATACCGTGGTTTTATGTAACCTGTTGTGGCTTCACTTAAAAATATGTAATGCTGAGAAACATATGTTCTTCTGAAGATAATAAAAGTTGAATATGTATTATTCTGAGCGATGGGTTTTTCATGAGTCTCGAATGGCCATCATCGTCCTTGCAGTAGTGAAAATCCATGTAGGGATTATGTTGGTTTTTGTTGAAATGGTGTGTCAATAAATATACAAAATGGTGA
>XM_036984158.1
GAAGACCGTACACTTCCTATTTTGGTACATACACGTGTTGGAACAGGCATCGATTCAACTGGTTAACACCGGCTATCTAGCATTGGGTAACCGAATCACTGTTTTCTTTGGAAATAAAGCTAGTTAACACGAACGGAACCATGCTATCAGATTTGGACCTGGTCGGGACAATTCAGGACCATGACGATGTGCCCGAGGAGCCTGATTCAGAGTCTGACGACGAAGATGAACAGCCAATAGTACTCAACAAGAAGAAGAAAGCGTTGAAGGGCCATGGCGCTGGGGATTTCAGCGCTGACTTTGAgtttggagagagggatggactcTACAGCGAGGACTGGGCTATGGCAGATGTGATGGCACAGCTGAAGAAGAGGAAAGCCCCCACCACCTTGGATGAAAAGATTGAGAAAGTACGCAAGAAGCGCAAAACAGAGGAGAAGGCAAAGACGACAGAAAAACCAGAGATTCCCTCAGAGgaagatgacgatgatgatgaggaggaggaggaggaggaagaagatgagAAACCTGATATAGCCGAAGATGGGGCTGAGGTATCCAATGACGAAGACCAGAGTGGTGATGATGGGGAGGAGTTTACATCAGGGGATGAAGAGGTTCTCACCAAAGCAGATACGGTGAGGGACAAAGGCAGAAAGAAGACAAAGGCAGAAGAGCCTCAAGAGGCCTTCTTTGAAGACGCCTCAAACTATGACGACAAACTCATGTTTCCCGACATGAACCTCTCCAGGCCTATTCTTAAGGCTATCACTGCTATGGGCTTCAAGCAGCCCACTCCCATCCAGAAGGCCTGTGTACCTGTGGGGCTTCTGGGCAAAGACATCTGTGCCTGCGCTGCTACTGGCACCGGTAAGACGGCAGCGTTCATGCTCCCTGTGCTGGAGCGTCTCATCTACAAGCCCAAACAGACCGCAGTGACCCGTGTGCTAGTCCTGGTGCCCACGCGTGAGCTGGGCATCCAGGTGCATGCCGTGGCCCGCCAGCTGGCCCAGTTCACAAGCATCACCACCTGCCTGGCCGTGGGGGGTCTGGACCTCAAATCCCAGGAGGTGGCATTGCGGATGGGCCCTGACGTCCTGATCGCAACGCCAGGTCGACTGATTGACCACCTGCACAACACGCCCTCTTTTGAGCTCAGCCAGATTGAGATCCTCATCCTGGACGAGGCTGACCGGATGCTGGACGAGTACTTTGAGGAGCAGATGAAGGAGATCATCAGGATGTGTGCCTACCAGAGACAGACCATGCTCTTCTCTGCCACCATGAGTGAAGAGgTGAAAGACTTGGCGTCGGTCTCTCTGAAGCAGCCGGTTCGTATCTTTGTGAACAGTAACACAGACGTGGCGCCCTACCTCAGACAGGAGTTTGTCAGGATCCGACCAgccagggaaggagacagggaggcTATTGTGGCCGCTCTGCTGACACGGACCTTCCAGGACCACGTGATGCTGTTCACCCAGACCAAGAAGCAAGCCCACCGGATGCACATCCTCCTGGGCCTGATGGGGCTGAAGGTGGGAGAGCTGCATGGGAACCTGTCCCAGACCCAGAGACTGGAGAGCCTCAGGCGGTTCAAAGATGAACAGATTGACATCCTTGTGGCCACAGACGTTGCGGCTAGAGGTCTGGATATCGATGGAGTCAAGACGGTGATTAACTTCACCATGCCCAACACAGTGAAGCACTACGTTCACAGGGTGGGTCGCACGGCCCGTGCCGGCAAGGTCGGTCGCTCTGTGTCCCTGGTGGGCGAGACTGAGAGGAAGATGCTAAAGGACATCGTCAGGAAGGCCAAGACCCCCGTGAAGGCCCGCGTCCTGCCACAAGAGGTGATTCTGAAGTTCAGAGACCTGATTGAGAAGCTGGAGAAGGACGTGTACGCCGTGATgcgtctggagagagaggagagggccatGTCTCACTCGGAGGCTCAGATCAGTGTGGCACAGAAGCGGCTGGCACAGAACGCAGACGAGACGGATCCAAAGAGGATGTGGTTCCAAACGCACGACGAACGCAAAAAAGACCGCATGACCAAAGCGCTGGCTGACTTTGACTTGGCCCTGAGAggaaaaaagaagagagagaagttcATCAAGGAGGGGAAAAAGAAAGAGTTATCGTCTGAGGATAGAGCAGAGTTTGAGGTCCTCAAGTCCCAGATGTACGCTGAGCGATCAGCCAAGAGGGACCGGAAACCCAAACGAGCCAGAGCCATGCCAGAGGACGAGCCTGTTCAGAAAGGTGCGAAACAGAAAGCTGGTAAACCAGCCAAGAAGTCTGTATTTGACAAAGAACTTACAAACACCAGTAAGAAAGCACTCAAGCAGTACAGAGCTGGACCCTCCTTTGAGGATAAGAAGAGGCTTGGAATTCCAACGAACAAGAAAGGAGGCGGTGGCTTCAAGTCCAAGGCCAAGTTTAGGAGAAAGTAAGAGCTGCCTTGATGGGAAAATGACAAGATATGCAATTTGGATGGATGGATTCACCTCCAGTGTGTCTTTTGTTTTGAGTGTCTGTCTTCCTAAATCAGTGCTTTCCCACTTTTCAGTGGGGGCATAATGGAAATAGACTGGAAAGGTTTTGGCTGAAATCCTTTCATTAGCCTCAGATTGCACTCTGCGTCCTCTCTTAGTTTTTATATGTCAGACCtacacacacgcaaacaaacaTACAGGTTGCAGTGTGTAACCATACCGTGGTTTTATGTAACCTGTTGTGGCTTCACTTAAAAATATGTAATGCTGAGAAACATATGTTCTTCTGAAGATAATAAAAGTTGAATATGTATTATTCTGAGCGATGGGTTTTTCATGAGTCTCGAATGGCCATCATCGTCCTTGCAGTAGTGAAAATCCATGTAGGGATTATGTTGGTTTTTGTTGAAATGGTGTGTCAATAAATATACAAAATGGTGA

Function

symbol description
ddx27 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Acts upstream of or within rRNA processing. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; brain; digestive system; musculature system; and retina. Orthologous to human DDX27 (DEAD-box helicase 27).

NR:

description
probable ATP-dependent RNA helicase DDX27

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13181 DDX27, DRS1; ATP-dependent RNA helicase DDX27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984157.1 False 2996 mRNA 0.51 21 79279399 79301866
XM_036984158.1 True 2945 mRNA 0.51 21 79279399 79301866

Neighbor

gene id symbol gene type direction distance location
LOC110528554 NA coding downstream 2190 79275251 ~ 79277209 (-)
znfx1 LOC106583673 coding downstream 4279 79262052 ~ 79275120 (-)
LOC110528552 cdh22 coding downstream 163135 78846274 ~ 79116264 (-)
LOC110527149 NA coding downstream 706592 78569709 ~ 78572807 (-)
gcnt7 LOC106583665 coding downstream 855278 78410565 ~ 78424121 (-)
snrpb snrpb coding upstream 6367 79308233 ~ 79311901 (-)
ube2c ube2c coding upstream 40416 79342282 ~ 79346292 (-)
LOC110528560 dnttip1 coding upstream 44778 79346644 ~ 79358639 (-)
pcif1 LOC106583676 coding upstream 57178 79359044 ~ 79384929 (-)
ctsa ctsa coding upstream 119419 79421285 ~ 79439915 (-)
G652268 LOC106604946 non-coding downstream 55078 79224048 ~ 79224321 (-)
G652266 NA non-coding downstream 57832 79221338 ~ 79221567 (-)
G652243 NA non-coding downstream 91846 79187339 ~ 79187553 (-)
G652093 NA non-coding downstream 115118 79163970 ~ 79164281 (-)
G652314 NA non-coding upstream 19509 79321375 ~ 79321620 (-)
G652335 NA non-coding upstream 85065 79386931 ~ 79387396 (-)
G652578 ncoa5 non-coding upstream 152209 79454075 ~ 79457103 (-)
G652589 NA non-coding upstream 163581 79465447 ~ 79466226 (-)
G652597 NA non-coding upstream 176903 79478769 ~ 79481328 (-)
eya2 LOC106583664 other downstream 966897 78209092 ~ 78312601 (-)
G650763 NA other downstream 1232930 78043299 ~ 78046469 (-)
G650755 cbfa2t2 other downstream 1249646 78029244 ~ 78029753 (-)
LOC110529034 LOC106583646 other downstream 1896463 77380754 ~ 77390369 (-)
G649684 LOC100136508 other downstream 2262798 77009249 ~ 77016601 (-)
G653015 NA other upstream 641335 79943201 ~ 79943728 (-)
rab22a rab22a other upstream 724094 80025960 ~ 80046659 (-)
G653274 NA other upstream 1043936 80345802 ~ 80347567 (-)
LOC110528585 LOC106583707 other upstream 1348724 80650590 ~ 80723518 (-)

Expression


Co-expression Network