XLOC_002500 (WDR70)


Basic Information

Item Value
gene id XLOC_002500
gene name WDR70
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1434956 ~ 1523289 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004670
GATGGAGACCTCTCCTCCGTCATGGGCTTCTCTGGGTTCGGGAGAAAAGCTCGAACCTTTGACCTGGAGGCCATGTTTGAGCAGACCAGGCGGACGGCCATCGAGAGGAGCCAGCGAGTGTTAGGTCAATATGGTGACGTCTCTCTCTCTGGTGTGCTTGTGGTCAGGAAGCAGCAGCCGGACAGTGATGAGAGCGACTCTGATGTCATCGGTCCTCTTCCTCCACCTGCTCAggctgatgatgaagatgatgatgatgatgatgatggagtggTCGGACCACCGCTGCCACCCGGATTCATGCGCAGCACTGCTGACGAGGATGATGATGAGGACGGCAATGAGGacgaggatgatgatgatgatgatgatAATCCAGTGAAGAAGATACCGGATACTCATGAGATCACACTTCAACACGGCACTAAAACCGTTTCAGCTTTGGCTCTGGACCCGTCTGGTGCTCGTCTGGTCACCGGTGGTTATGACTATGATGTGCGCTTTTGGGATTTCGCCGGGATGGACGCAAATCTGCATGCCTTCCGGTCACTCCAGCCATGTGAATGtcatcAGATCAAAGCCCTGCAGTACAGCATCACAGGTGACGTCATTCTGGTTGTGGCTGGAAACTCTCAAGCCAAAGTTCTGGACCGGGACGGTTTCCAGGTTCTTGAGTGCATTAAAGGAGACCAGTACATCGTGGACATGGCCAATACCAAGGGTCACACTGCTATGCTGAACGACGGCTGCTGGCATCCCAAAATCAAAGAGGAGTTCCTGACCTGCTCCAATGACGGGACTGTGCGCACGTGGGACTTGACCTCCGAAAAGAAGCACAAATCAGTGTTCAAGCCTCGATCCCAGCAGGGCAAGAGAGTGACTCCCACCTGCTGCACCTACAGCCGGGACGGCAAACTCATCGCCGCAGGCTGCCAGGACGGGACCATCCAGATCTGGGACCGAAACCTGAGCGTCCACACCAAGTTCCACTGCCGGCAGGCGCACGCCCCTGGATCAGACACGTCCAGCCTGTGCTTCTCCTATGACGGAGTCACTCTAGCGTCCAGAGGAGgCGATGACACACTGAAGACGTGGGACATTCGCAGCTTCAGGAGTCCACTCAATGTGGCCACCGGCTTGACCTCCTTCTTCCCCAtgaccGACTGCTGCTTCAGTCCGGATGATAAGCTGCTGGTGACGGGCACATCTGTGAGAAAGGACGAGGGTCAGGGGAAACTGCTGTTCTTCCAGCGAGAGACTCTACAGAAACTCTATGAGATTGAGGTGGCCGATGCGAGCGTGGTCCGCTGTCTTTGGCACCCCAAGCTCAATCAGATCATGGTTGGAACGGGAAACGGCCTGGCCAAGGTTTACTACGACCCGGTCAAGAGTCAGAGagGTGCGATATTGTGTGTGGTGAAGAGTAAGAGGAAGGAGAAACATGCAGAGACCCTGACACAGGATTACATCATCACCCGTGAGTAcagtacacactcacacacacttcaaATTGTAATCAGTGTGTGGGCAAATGTAGTAACATTCAACCCATtacaattcatcagaatggggaagaaaggagatttaagtgactttgaacgtggcatggttgttgctgccagacgggctgctcagagtatttcagaaacggctgatctactgggattttcacgcacaaccatctctaggctttacagagaatgctccaacaaagaggaaatctccagtgagcggcagttctgtggacgcaaatgccttgttgaggtcagaggagaatggccagactggttccagctgatggaacggcaacagtaa
>TCONS_00004669
GATGGAGACCTCTCCTCCGTCATGGGCTTCTCTGGGTTCGGGAGAAAAGCTCGAACCTTTGACCTGGAGGCCATGTTTGAGCAGACCAGGCGGACGGCCATCGAGAGGAGCCAGCGAGTATATGGTGACGTCTCTCTCTCTGGTgctgatgatgaagatgatgatgatgatgatgatggagtggTCGGACCACCGCTGCCACCCGGATTCATGCGCAGCACTGCTGACGAGGATGATGATGAGGACGGCAATGAGGacgaggatgatgatgatgatgatgatAATCCAGTGAAGAAGATACCGGATACTCATGAGATCACACTTCAACACGGCACTAAAACCGTTTCAGCTTTGGCTCTGGACCCGTCTGGTGCTCGTCTGGTCACCGGTGGTTATGACTATGATGTGCGCTTTTGGGATTTCGCCGGGATGGACGCAAATCTGCATGCCTTCCGGTCACTCCAGCCATGTGAATGtcatcAGATCAAAGCCCTGCAGTACAGCATCACAGGTGACGTCATTCTGGTTGTGGCTGGAAACTCTCAAGCCAAAGTTCTGGACCGGGACGGTTTCCAGGTTCTTGAGTGCATTAAAGGAGACCAGTACATCGTGGACATGGCCAATACCAAGGGTCACACTGCTATGCTGAACGACGGCTGCTGGCATCCCAAAATCAAAGAGGAGTTCCTGACCTGCTCCAATGACGGGACTGTGCGCACGTGGGACTTGACCTCCGAAAAGAAGCACAAATCAGTGTTCAAGCCTCGATCCCAGCAGGGCAAGAGAGTGACTCCCACCTGCTGCACCTACAGCCGGGACGGCAAACTCATCGCCGCAGGCTGCCAGGACGGGACCATCCAGATCTGGGACCGAAACCTGAGCGTCCACACCAAGTTCCACTGCCGGCAGGCGCACGCCCCTGGATCAGACACGTCCAGCCTGTGCTTCTCCTATGACGGAGTCACTCTAGCGTCCAGAGGAGgCGATGACACACTGAAGACGTGGGACATTCGCAGCTTCAGGAGTCCACTCAATGTGGCCACCGGCTTGACCTCCTTCTTCCCCAtgaccGACTGCTGCTTCAGTCCGGATGATAAGCTGCTGGTGACGGGCACATCTGTGAGAAAGGACGAGGGTCAGGGGAAACTGCTGTTCTTCCAGCGAGAGACTCTACAGAAACTCTATGAGATTGAGGTGGCCGATGCGAGCGTGGTCCGCTGTCTTTGGCACCCCAAGCTCAATCAGATCATGGTTGGAACGGGAAACGGCCTGGCCAAGGTTTACTACGACCCGGTCAAGAGTCAGAGagGTGCGATATTGTGTGTGGTGAAGAGTAAGAGGAAGGAGAAACATGCAGAGACCCTGACACAGGATTACATCATCACCCGTGAGTAcagtacacactcacacacacttcaaATTGTAATCAGTGTGTGGGCAAATGTAGTAACATTCAACCCATtacaattcatcagaatggggaagaaaggagatttaagtgactttgaacgtggcatggttgttgctgccagacgggctgctcagagtatttcagaaacggctgatctactgggattttcacgcacaaccatctctaggctttacagagaatgctccaacaaagaggaaatctccagtgagcggcagttctgtggacgcaaatgccttgttgaggtcagaggagaatggccagactggttccagctgatggaacggcaacagtaa
>TCONS_00004671
tttgcgtgtgtgtgtgtgtgtgtgatctcagGTGCAGATGGAGACCTCTCCTCCGTCATGGGCTTCTCTGGGTTCGGGAGAAAAGCTCGAACCTTTGACCTGGAGGCCATGTTTGAGCAGACCAGGCGGACGGCCATCGAGAGGAGCCAGCGACATCCGCCAATCcacaaatcacacacacaacGAGTCTCTCAGCGCAGCGAGTTCTGGTGCAcaagcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtggtaTTACCACTGTAAAGCACTTACAGGTGTACGCAGGGGTCAGGACACTCAGTCTGGGGCCTGTAAAAACTGCTGAAGAGTTTCTCTTTGTGTTTGATACACGCCTCTGCTCTCCGCTTTCTGTTTCAGCTTTGGCTCTGGACCCGTCTGGTGCTCGTCTGGTCACCGGTGGTTATGACTATGATGTGCGCTTTTGGGATTTCGCCGGGATGGACGCAAATCTGCATGCCTTCCGGTCACTCCAGCCATGTGAATGtcatcAGATCAAAGCCCTGCAGTACAGCATCACAGGTGACGTCATTCTGGTTGTGGCTGGAAACTCTCAAGCCAAAGTTCTGGACCGGGACGGTTTCCAGGTTCTTGAGTGCATTAAAGGAGACCAGTACATCGTGGACATGGCCAATACCAAGGGTCACACTGCTATGCTGAACGACGGCTGCTGGCATCCCAAAATCAAAGAGGAGTTCCTGACCTGCTCCAATGACGGGACTGTGCGCACGTGGGACTTGACCTCCGAAAAGAAGCACAAATCAGTGTTCAAGCCTCGATCCCAGCAGGGCAAGAGAGTGACTCCCACCTGCTGCACCTACAGCCGGGACGGCAAACTCATCGCCGCAGGCTGCCAGGACGGGACCATCCAGATCTGGGACCGAAACCTGAGCGTCCACACCAAGTTCCACTGCCGGCAGGCGCACGCCCCTGGATCAGACACGTCCAGCCTGTGCTTCTCCTATGACGGAGTCACTCTAGCGTCCAGAGGAGGTCAGAACAGCCCTGCATTAATGCACACAGTAAAATAG
>TCONS_00004672
gtgatctcagGTGCAGATGGAGACCTCTCCTCCGTCATGGGCTTCTCTGGGTTCGGGAGAAAAGCTCGAACCTTTGACCTGGAGGCCATGTTTGAGCAGACCAGGCGGACGGCCATCGAGAGGAGCCAGCGAGTGTTAGGTCCAGGTGTGCTGGAACAGCAGCATCCGCCAATCcacaaatcacacacacaacGAGTCTCTCAGCGCAGCGAGTTCTGGTGCAcaagcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtggtaTTACCACTGTAAAGCACTTACAGGTGTACGCAGGGGTCAGGACACTCAGTCTGGGGCCTGTAAAAACTGCTGAAGAGTTTCTCTTTGTGTTTGATACACGCCTCTGCTCTCCGCTTTCTGTTTCAGCTTTGGCTCTGGACCCGTCTGGTGCTCGTCTGGTCACCGGTGGTTATGACTATGATGTGCGCTTTTGGGATTTCGCCGGGATGGACGCAAATCTGCATGCCTTCCGGTCACTCCAGCCATGTGAATGtcatcAGATCAAAGCCCTGCAGTACAGCATCACAGGTGACGTCATTCTGGTTGTGGCTGGAAACTCTCAAGCCAAAGTTCTGGACCGGGACGGTTTCCAGGTTCTTGAGTGCATTAAAGGAGACCAGTACATCGTGGACATGGCCAATACCAAGGGTCACACTGCTATGCTGAACGACGGCTGCTGGCATCCCAAAATCAAAGAGGAGTTCCTGACCTGCTCCAATGACGGGACTGTGCGCACGTGGGACTTGACCTCCGAAAAGAAGCACAAATCAGTGTTCAAGCCTCGATCCCAGCAGGGCAAGAGAGTGACTCCCACCTGCTGCACCTACAGCCGGGACGGCAAACTCATCGCCGCAGGCTGCCAGGACGGGACCATCCAGATCTGGGACCGAAACCTGAGCGTAAGTGTGTTTTTCCCCATATCAAATACAGtggggatgcacaatatatcagtCTTATGTTTATACTTTACAGAATCATCTTGCGGGCCAGATTAA
>TCONS_00005743
GGGTCCAAGGTAAATataggccaactttggcctgcgtgccctactttgggcatctctgacgTAGACATACAAAACTCTCTTTCTCTTAATAATGATTGAATCCTTTCGATTTGAAAAGATGAACCCTTATGACTGGGTTTGTGGTCAGATATGGTGACGTCTCTCTCTCTGGTGTGCTTGTGGTCAGGAAGCAGCAGCCGGACAGTGATGAGAGCGACTCTGATGTCATCGGTCCTCTTCCTCCACCTGCTCAggctgatgatgaagatgatgatgatgatgatgatggagtggTCGGACCACCGCTGCCACCCGGATTCATGCGCAGCACTGCTGACGAGGATGATGATGAGGACGGCAATGAGGacgaggatgatgatgatgatgatgatAATCCAGTGAAGAAGATACCGGATACTCATGAGATCACACTTCAACACGGCACTAAAACCGTTTCAGCTTTGGCTCTGGACCCGTCTGGTGCTCGTCTGGTCACCGGTGGTTATGACTATGATGTGCGCTTTTGGGATTTCGCCGGGATGGACGCAAATCTGCATGCCTTCCGGTCACTCCAGCCATGTGAATGtcatcAGATCAAAGCCCTGCAGTACAGCATCACAGGTGACGTCATTCTGGTTGTGGCTGGAAACTCTCAAGCCAAAGTTCTGGACCGGGACGGTTTCCAGGTTCTTGAGTGCATTAAAGGAGACCAGTACATCGTGGACATGGCCAATACCAAGGGTCACACTGCTATGCTGAACGACGGCTGCTGGCATCCCAAAATCAAAGAGGAGTTCCTGACCTGCTCCAATGACGGCCGTAACGCTCTGCGAGGTCGTCCCAGGAGCGTCTGCTGGAGGCCAAATGCCACAGATTCCCATCATGCCGTGCTGGAGCAAGAGCAGGTTTCTGGCTCTGGAGATCTGCCACCTGTTTCAGCTACTATTCAGTCACATCGGGAAAATCTCCAGCTCAATATTGCTGTAATATTTTGCTTTCTCACGAAGGATAAACACAGCAGAGCCGTAACAGCGGGATGCATCAGTTTTAATATGTGcgtttgagtttgtgtgtataAGTCCTgctgaaatttatatttgttttaagagGTGCTCGGGAAATGTGGCCGATTTGTGTCCGTGTGGTGGCAGCTTCCCAGAGCCTTTATTTATACGTGTTTTgagatatgattttttttcccgGAGCTTCACAACAGACTGTATTTTTAGCAGTCTGCTCGTTTGGTTGAGTCGGAGCCCTGAAGATAGATGAGGAGAAATCCCATATGCTTTGGATCTTGTCTAAATTGCTGGTCTTATCGGTGTTAATTAACCTCCGGGGCTTCGGCCAAAACTCTCTGATATGCAAGAAGGTTCAGACTTATTAAAATACATCTTTTACTGTGATTAGATAACGGCACACTGCTCACATCTTCTTTCCTTTTCTTCTGTTTCA

Function

symbol description
wdr70 Enables enzyme binding activity. Predicted to be involved in regulation of DNA double-strand break processing and regulation of histone H2B conserved C-terminal lysine ubiquitination. Predicted to be active in nucleus and site of double-strand break.

GO: NA

KEGG:

id description
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins
ko03400 DNA repair and recombination proteins

Ensembl:

ensembl_id ENSDARG00000109022

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004670 False 1815 mRNA 0.53 14 1434956 1523253
TCONS_00004669 False 1725 mRNA 0.53 15 1434956 1523253
TCONS_00004671 False 1056 mRNA 0.55 9 1450184 1523289
TCONS_00004672 False 1023 mRNA 0.53 10 1476006 1523268
TCONS_00005743 True 1455 lncRNA 0.48 6 1496031 1519871

Neighbor

gene id symbol gene type direction distance location
XLOC_002499 NA coding downstream 1816 1423241 ~ 1433140 (-)
XLOC_002498 opn4xa coding downstream 114842 1294463 ~ 1320114 (-)
XLOC_002497 pdlim5b coding downstream 158910 1187653 ~ 1276046 (-)
XLOC_002496 bmpr1bb coding downstream 254642 1082961 ~ 1180314 (-)
XLOC_002494 glis3 coding downstream 744786 644574 ~ 690170 (-)
XLOC_002501 CABZ01066320.2 coding upstream 17974 1541263 ~ 1544095 (-)
XLOC_002502 CABZ01066320.1 coding upstream 20874 1544163 ~ 1552789 (-)
XLOC_002503 nup155 coding upstream 73981 1597270 ~ 1636452 (-)
XLOC_002504 NA coding upstream 143053 1666342 ~ 1667630 (-)
XLOC_002505 NA coding upstream 145855 1669144 ~ 1718637 (-)
XLOC_002495 NA non-coding downstream 777550 657051 ~ 657406 (-)
XLOC_002492 NA non-coding downstream 886755 546202 ~ 548201 (-)
XLOC_002491 NA non-coding downstream 1013303 415997 ~ 421653 (-)
XLOC_002489 NA non-coding downstream 1076249 356555 ~ 358707 (-)
XLOC_002506 NA non-coding upstream 154994 1678283 ~ 1741175 (-)

Expression


Co-expression Network