LOC110528574 (LOC106583691)


Basic Information

Item Value
gene id LOC110528574
gene name LOC106583691
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 80111773 ~ 80128190 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984178.1
GCTCCCTTTAAAAGCCCTGGCATCCTTTCATTACTTACACTACTGCAGTACTACAACAAGCAACTCAATCCACTTACCAACACAACCACATGAGATACAGCTTCAATGGGTTTTGACGTTGGTAAAGTAGAGCTCCACTGTGAGAAGAACAACACAGCCCACAAAACCAATGACATCTCAGTGAACAGACTGATAGTCAGGAGAGGCCAGTCCTTCCTGGTCACCTTTGACTTCCATGGCCCCTTCAGATCCACAACAGACTTACTGGAGCTGACGGTGGAGACAGGGCCCCAGCCTTCAGAGGCATTGGGGACCAGGTCAGTGTTCGGGCTACCTGAAGGCCGTTGGAAGCGTTCATCCTGGAAGGTCAAGGTTCACCAGGGCTCAGTGCTCCCGGTGGGTTCAATCACCCTGGACATCACCAGCCCAGCAGACGCCCCAGTGGGAGAGTACAGCCTGTCTGTAAAGACCAGCGCCACCGCCTCAGTGGGCAGCAGCCTGGGCAAGCTCCTTCTGCTGTTTAATCCCTGGTGCCAAGAGGACTGGGTGCATCtacctgaggaggaggagaggcaggagtaTGTGATGAGAGAACAAGGCCTGGTGTACAAAGGATCTGACAATTACATCAGCTCTATGGCGTGGAACTTCGGACAGTTTGAAGACGATATAGTGGACATTTGCCTGAAGCTGCTTGACGTGAATCCCAAGTGTCTGAGTGACCCCGCCAAGGACTTCTCTGCTCGTTGCAACCCCATCTATGTCAGTCGGGTGGTCAGTGCCATGATCAACGCTAACGATGACGGAGGTGTCCTGATGGGGCGGTGGGATGGTCAATACGATGGTGGCGTGTCCCCCACTCACTGGAACGGCAGTGTGGAGGTACTAAGGAGGTGGCTCAAATATGGTGGTAATCCAGTCAAGTATGGCCAGTGTTGGGTGTTCGCCGCTGTAATGTGCACAGTACTGAGGTGTTTGGGAATCCCATGTCGAGTGGTTACCAACTTCCAGTCAGCCCACGACACCGACAAAAACCTGACAATTGACGACTTCTTCTCCGACTATGGAGTCAGACCCAAACAGAGCCCCGACAGTGTATGGAACTACCATGTGTGGGTGGAGGCTTGGATGAGACGGCCCGATCTCTCAGTAGACTCCTTATACGATGGCTGGCAGGCTGTGGACCCCACCCCCCAGGAGAAAAGCACTGgTGTTTACTGCTGCGGCCCTGCTCCAGTCAAGGCCATACTGCAGGGTCACGTTGACCTCAAATACGATGTGCCCTTTGTCTTCGCCGAAGTCAACGCCGACCGTGTAACCTGGATGGTGTTCGCTGACGGCTCCAAGAAAAATATTTTCACGGACACTGTGTCCGTAGGCCAGAACATCAGCACCAAGGCAGTGGGCAGCGACAAGAGAGTGGACATCACGGCCAACTATAAACATGCAGAGGGCACAGAAAAGGAGAGGGCTGTGTACAATCAAGCTGTGAAAAAAGTCAACATACCAGAAGAGAATTCAAACGGGATCCATGACGACAAACCTGGCGTTTCCATGAAGATCGTGGAGCTGACCAAGCCGGTCAGCGGCAAAGACATTGACCTCGAGCTTGTACTGAACAGCAACGACAATGAAACTCGGACACTAGTAATCAATGTCAACGTTCAGGCCATGAGATACAACGGGATCCCATCCTCCCAGATACAGACCGAATTGAAAGAACAGAAGCTCCTTCCCAACCAAGATCTAACTATACCCATCCACATCACCTTCTCTGTGTATGGGGAGAAAATGCGGGAGAGCAACAGCATCAAGGTTTCGGCTGTGGTCACAGACAAGGACAAGAGTGGGGCAGTGTACATCACAGAGAAAGACTTTGTGCCAGAGAGCCCTTCGCTCACCATCAAAGCCATTGGATCTGAATTGCAGTATAGTGACATGATGGCAGAGGTTGTGTTTGAGAACCCTCTATCCGAAGGTCTAAGAGACTGCTTCATAACAGTGACCGGCAGTGGCTTGCTGACTGAAACAATGGAAGCCAGAATGCCTTTGCTAAAGCAAGGGCATCGACTACGTGTGAAGATTCCCTTCACTCCATACAGACCCGGTCCTAAGAAGCTAGTGGCCGGCTTCAACTGTGATCAATTCAGGGACATTAAGGCAAGCTGCAATGTGTACATCAAACCCTTCACCAGTGTTGTCCCCCCACTGCCGTAGATAGCAAAGCCCTCGTGAGAATTACTCTAATAACTCAAATAAGTTCATCAATTTATGCCGTATTTTCCTGTTATATCCTATATCAGCCTTTCTTAAAGTAGGGGTCGCGACCCTGACCTGTTAATGGTGGGTCGTGACGTGTCAGAGTAAATGTATCAATATTTCATATATGTCACGTGTcaatacttcacaggagagggaTTTGAACATAAATGTTTTTCTTATCagcatctgggtttttttttggtccgaaatgccttctggaacatgtgaactttcatgttccttaataacaaatgtgtttgccatctgtaaatactaaTACAATTGTGAAATTACCAGCCTAGTTGGTTAAGCCACTGAAAAAGCCAGGaatcttcccgctagccatgattggctgagataatggaagggctggacatgccgagacaTGAGTTCGgactggtctgccatgtagcaagcttctgtc

Function

NR:

description
protein-glutamine gamma-glutamyltransferase 2-like

GO: NA

KEGG:

id description
K05622 TGM5; transglutaminase 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984178.1 True 2686 mRNA 0.50 13 80111773 80128190

Neighbor

gene id symbol gene type direction distance location
rab22a rab22a coding downstream 65114 80025960 ~ 80046659 (-)
LOC110528568 LOC106583688 coding downstream 86586 79990599 ~ 80025187 (-)
LOC100136661 LOC106583685 coding downstream 354632 79745594 ~ 79757141 (-)
LOC110528565 dok5 coding downstream 374245 79733712 ~ 79741993 (-)
LOC110529040 LOC106565077 coding downstream 387469 79457337 ~ 79724304 (-)
LOC110528575 LOC106583691 coding upstream 24689 80152879 ~ 80167279 (-)
LOC110529043 LOC106583712 coding upstream 133050 80261240 ~ 80353006 (-)
LOC110528589 LOC106583709 coding upstream 430374 80558564 ~ 80612786 (-)
LOC110528585 LOC106583707 coding upstream 527383 80650590 ~ 80723518 (-)
LOC110528602 NA coding upstream 1170717 81298907 ~ 81299848 (-)
G653098 NA non-coding downstream 48196 80063207 ~ 80063577 (-)
G653043 NA non-coding downstream 64039 80047356 ~ 80047734 (-)
G653058 NA non-coding downstream 110141 80001063 ~ 80001632 (-)
G653053 NA non-coding downstream 129571 79981981 ~ 79982202 (-)
G653156 NA non-coding upstream 58185 80186375 ~ 80186580 (-)
G653162 NA non-coding upstream 64773 80192963 ~ 80193190 (-)
G653166 NA non-coding upstream 67920 80196110 ~ 80196431 (-)
G653168 NA non-coding upstream 69403 80197593 ~ 80198028 (-)
G653172 NA non-coding upstream 71418 80199608 ~ 80199888 (-)
G653015 NA other downstream 168045 79943201 ~ 79943728 (-)
G652578 ncoa5 other downstream 656385 79454075 ~ 79457103 (-)
eya2 LOC106583664 other downstream 1799271 78209092 ~ 78312601 (-)
G650763 NA other downstream 2065304 78043299 ~ 78046469 (-)
G653274 NA other upstream 217612 80345802 ~ 80347567 (-)
G653977 NA other upstream 650570 80778760 ~ 80780691 (-)
G655289 NA other upstream 1387347 81515537 ~ 81516722 (-)
G655297 NA other upstream 1408367 81536557 ~ 81537098 (-)

Expression


Co-expression Network