LOC110528575 (LOC106583691)


Basic Information

Item Value
gene id LOC110528575
gene name LOC106583691
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 80152879 ~ 80167279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984179.1
TGCAGTACTACAACAAGCAACTGAATCCACTTAACAACACAACCACGTGAGAGACAGCTTCAATGGATTTTGACGTTGGTAAAATAGATCTCCACTGTGAGAAGAACAACACAGCCCACAAAACCAATGACATCTCAGTGAACAGACTGATAGTCAGGAGAGGCCAGTCCTTCCTGGTCACCTTTGAACTCCATGACCCCTCCAGGCCCACAACAGACTTACTAGAGCTGACGGTGGAGACAGGGCCCCAGCCTTCAGAGGCATTGGGGACCAGGTCAGTGTTTGGGGTACCTGAGGGCTGTGGGAAGGGTTCCTCCTGGAAGGTCAAGGTTCACCAGGGCTCAGTGCTCCCGGCGGGTTCAATCACCCTGGACATCACCAGCCCAGCAGACGCCCCAGTGGGAGAGTACAACCTGTCTGTAAAGACCAGCGCCACCGCCTCAGTGGGCAGCAGCCTGGGCAAGCTCCTTCTGCTGTTTAATCCCTGGTGCCAAGAGGACTGGGTGCATCtacctgaggaggaggagaggcaggagtaTGTGATGAGAGAACAAGGCCTGGTGTACAAAGGTTCTGACAAATACATCAGCTCTATGGCGTGGAACTTCGGACAGTTTGAAGACGATATAGTGGACATTTGCCTGAAGCTGCTTGACGTGAATCCCAAGTGTCTGAGTGACCCCGCCAAGGACTTCTCTGCTCGTTGCAACCCCATCTATGTCAGTAGGGTGGTCAGTGCCATGATCAACGCTAACGATGACGGAGGTGTCCTGATGGGGCGGTGGGATGGTCAATACGATGGTGGCATGTCCCCCACTCACTGGAACGGCAGTGTGGTGGTACTAAGGAGGTGGCTCAAATATGGTGGTAATCCAGTCAAGTATGGCCAGTGTTGGGTGTTCGCCGCTGTAATGTGCACAGTACTGAGGTGTTTGGGAATCCCATGTCGAGTGGTTACCAACTTCCAGTCAGCCCACGACACCGACAAAAACCTGACAATTGACGACTTCTTCTCCGACTATGGAGTCAGACCCAAACAGAGCCCCGACAGTGTATGGAACTACCATGTGTGGGTGGAGGCCTGGATGAGACGGCCCGATCTCTCAGCAGGCTCCTTATACGATGGCTGGCAGGCTGTGGACCCCACCCCCCAGGAGAAAAGCACTGGTGTTTACTGCTGCGGCCCTGCTCCAGTCAAGGCCATACTGCAGGGTCACGTTGACCTCAAATACGATGTGCCCTTTGTCTTCGCCGAAGTCAACGCCGACCGTGTAACCTGGATGGTGTTCGCTGACGGCTCCAAGAAAAAGATCTCCACGGACACTGTGTCCGTAGGCCAGAACATCAGCACCAAGGCAGTGGGCAGCGACAAGAGAGTGGACATCACGGCCAACTATAAACATGCAGAGGGCACGGAAAAGGAGAGGAATGTGTACAATCAAGCTGTGAAAAAAGTCAACATACCCAAAGAGATTTCAAACGGGATCCATGACGGCAAACCTGGCGTTTCCATGAAGATCGTGGAGCTGACCAAGCCGGTCAGCGGCAAAGACATCGACCTCAAGCTTGTACTGAACAGCAACGACAATGAAACTCGGACACTAGTGATCAATGTCAACGTTCAGGCCATGAGATACAACGGGATCCCATCCTCCCAGATACAGACCGAATTGAAAGAACAGAAGCTCCTTCCCAACCAAGATCTAACTATACCCATCCACATCCCCTTCTCTGTGTATGGTGAGAAAATGCGGGAGAGCAACAGCATCAAGGTTTCGGCTGTGGTCACAGACAAGGACAAGAGTGAGGCAGTGTACATCACAGAGAAAGACCTTGTGCCAGAGAGCCCTTTGCTCACCATCAAAGCCATTGGATCTGAATTGCAGTATAGTGACATGATGGCAGAGGTTGTGTTTGAGAACCCTCTATCCGAAGGTCTAAGAGACTGCTTCATAACAGTGACCGGCAGTGGCTTGCTGACTGAAACAATGGAAGCCAGAATGCCTTTCCTAAAACAAGGGCAACGACTACGTGTGAAGATGCCCTTCACCCCATACAGACCCGGTCCTAAGAAGCTAGTGGCCGGCTTCAACTGTGATCAATTCAGGGACATTAAGGCAAGCTGCAATGTGTACATCAAACCCTTCACCGGTGTTGTCCCCCCACTGCCGTTGTTAGTAAAGCCCTTGTGAGAATAAATCTAACTCAAATAGTTTTTCCAATTTATACCTTATTttcaaattaggatataacgttagggtAACGAGACAGTGTCGGAGTTCTAtaattctctggtagaatgtcCTGCTTCTATTTTGTCACACTCAACCATTAGCTATTTTCTAGTTCTGCTATTTTTTACCCCGAGACTGTTGACGTCATGCAGCCTGTAGTTTTTGTGTTTATAGATTTTCATAAAGCCAATAACAAATTTGATATCGGACGACAATTGAATGTTCATGATTTCACCGCAACAACTGTCGATAcacgtagtataaaccagcctttagtcttgaaatctttggttgtttagtacatggcctcacatgtgaatccttaaagagataggTGGGACAAAGGCTtgagagggtgtgaacgatactGAATGGGtgcagacaaagaagagctcctCAATAGTAGTACTGAGGAGgctcattttctcaaaagtgagattacaagtttatcaactttcaaagcagaattcctttcccattgttcttcaactgtagtgtatgatataccattttctaatTATGAGTCTCTAGTTTTATCTatgtcccaaaacattttttttcaaaaGACTGAATCAAGCTGGTTGGTCACACATGAAGATGAAACATGTTCAGACCTACTGTACAACTTACTGTATAAATTATTGTTGAAAACAAGTCTAACAAGTCTTGACTTTGTCTATGTAATCCTCTGTAATTGTGGTGCATGTATTGTTGACTGGTGTGGCTTCTTAATGCATTTTaaatggtcaaataaaataaaatgcataACTTGCATAA

Function

NR:

description
protein-glutamine gamma-glutamyltransferase 2-like

GO: NA

KEGG:

id description
K05624 TGM6; transglutaminase 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984179.1 True 3011 mRNA 0.48 13 80152879 80167279

Neighbor

gene id symbol gene type direction distance location
LOC110528574 LOC106583691 coding downstream 24689 80111773 ~ 80128190 (-)
rab22a rab22a coding downstream 106220 80025960 ~ 80046659 (-)
LOC110528568 LOC106583688 coding downstream 127692 79990599 ~ 80025187 (-)
LOC100136661 LOC106583685 coding downstream 395738 79745594 ~ 79757141 (-)
LOC110528565 dok5 coding downstream 415351 79733712 ~ 79741993 (-)
LOC110529043 LOC106583712 coding upstream 93961 80261240 ~ 80353006 (-)
LOC110528589 LOC106583709 coding upstream 391285 80558564 ~ 80612786 (-)
LOC110528585 LOC106583707 coding upstream 488294 80650590 ~ 80723518 (-)
LOC110528602 NA coding upstream 1131628 81298907 ~ 81299848 (-)
LOC110528600 LOC106566189 coding upstream 1134257 81301536 ~ 81313006 (-)
G653098 NA non-coding downstream 89302 80063207 ~ 80063577 (-)
G653043 NA non-coding downstream 105145 80047356 ~ 80047734 (-)
G653058 NA non-coding downstream 151247 80001063 ~ 80001632 (-)
G653053 NA non-coding downstream 170677 79981981 ~ 79982202 (-)
G653156 NA non-coding upstream 19096 80186375 ~ 80186580 (-)
G653162 NA non-coding upstream 25684 80192963 ~ 80193190 (-)
G653166 NA non-coding upstream 28831 80196110 ~ 80196431 (-)
G653168 NA non-coding upstream 30314 80197593 ~ 80198028 (-)
G653172 NA non-coding upstream 32329 80199608 ~ 80199888 (-)
G653015 NA other downstream 209151 79943201 ~ 79943728 (-)
G652578 ncoa5 other downstream 697491 79454075 ~ 79457103 (-)
eya2 LOC106583664 other downstream 1840377 78209092 ~ 78312601 (-)
G650763 NA other downstream 2106410 78043299 ~ 78046469 (-)
G653274 NA other upstream 178523 80345802 ~ 80347567 (-)
G653977 NA other upstream 611481 80778760 ~ 80780691 (-)
G655289 NA other upstream 1348258 81515537 ~ 81516722 (-)
G655297 NA other upstream 1369278 81536557 ~ 81537098 (-)

Expression


Co-expression Network