LOC110528589 (LOC106583709)


Basic Information

Item Value
gene id LOC110528589
gene name LOC106583709
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 80558564 ~ 80612786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610719.2
CAGTATGCCCTTGCTTCCCTCTCTAGTACAGAACTGAAAGGAGACCgggcagaggaacagaggaacagaggaacacaggaacacagtAATAGTAGAGctggaaaagaaagaaagagactgAAAGAGTACGGCATagaaaggacagggagagagagagaaagggggtaataGAAGGGTACAGgtgtgaagagacagagagacagagatagagagacagagagacaggcatactcagagagacagagagacagacaggctcagagagacagagatagagagacagagagacagacagactcagagagacagagatagagagagaaagcgcTCGATAGTGATCTGTGCATCttctactctactactactactctaccaccagCAGGACCATGGAGACAGGCAGCCCCAGGAAGATCCAGTTCACCATGCCTCTCCTCGACTCACACCTGGACCCAGAGGCTGCTGAACAGATCAGAAGACGTCGGCCCACCCCTGCTACTCTGGTGGCTTCCAGTGACCAGTCTTCTCCAGAAATAGATGAAGACCGTCTTCCTAACCAGTTATACAAGGCAGCCCTGTTGAACTCTCCCAGGCAGAGGAGGAAGGGAGCAAGAGGCACGCCCACCATGAAAGaattgCAGTTCATGGTAGAACACCACCTGTACAAGCAGCAGCACGGTGGAGATGATGAGTGTTCCTCAGAGAGCTGTCTGTCAGACAGACCCAGCCCGGACACTCTGCCCaccggagaggaggaggagctggagcTACCGGAGGACGAGGAGGCCTGGGGAACCGGCGACAATGTCACTGCGGAGGCCTTCGAGAAGCTGCGCTGTCAGATGGAGgAGTTTTCACGGGACAGTCTATCAGACGCTGCAGGGGGACATGAGTGCTCCTTCTCCAAGGAAGAAGTGGGATGTTCCACCGTCCCCATGGCAGcaacatcatcatcacaacaaaaacaacacacacaagcAGCGAGTCCAGAGGAGAAGAAAACAAAGAAACCCATCCAGGAATAAGAAGACAAATAGAACCATGGAACAGCCTCCACGCCAACCTGTcgtgtgtcccaaatggatccctattcccacagggctctggtcaaaaatagtgcaccatgtagggaataggttgccatttgggacctgATGTTCAGTTAATAACTACAGACAACAGGCAGACAAGTGATCATCCTTTTGATAAACAGACACACTGTAGATACGGAGACATCAGGATATATGTCTGGTCAGGTACTATACCGTGCAGGTGGAGAGATGACTAGGCGTTTATTTATGACTAGGCGTTTATTGTTTCTAATGATTTACTCATTTGATTGCCCCTACTAATCTGTAACTAATTATCTGATGTTTCAAACCAGGACAGGAAATATTTGGGTATTTTTCATGacagtttttggtttgttgcatACACAAACTGTAACGGCCTAGCACTCACATGTCTAATATGGCCCCTGTATAATACTCATAAATCCAAATATTGTCTCATGATTATTCTAAGATTGATTTGATGTTTTAGACATTCCGTCCAGGACTCTTGAAGGAACTAGACCTCGGTGGGCCAAAAGAGACTcccataaacaacaacaacaagaacagCATTTAGTCCTTATTCATATTTGTGCCACGACACACATTTGTGCCACGACAATAACATTGTCTATTTTTAAGAATCACAGGGCAGTATCACTGCATCACTTAGGGAACATCATTTCTCATATAGTGCACTAGCTTTGACCAGAGCCAAATGGAGTAGTGTACTACTGTATTATTGGGGACACGGTGCTTATTTGGGAGGCATCCTGGGAATCATCAATGACACAATCTGGAGCTGTGATCAGAGTGTTTTCGGTCTCTGTCTATTTGAGTCTCTGAAGTCTCCAAAACATATCTGATTAAGGGACCAATTCATTGGACAGGACTCTGGGTGAACTTTGATCTTTTAAAAACGTGTCTATTGACATCCCACGATCAACGTGTCTATTGACATCCCAGTCATGCATAGTACAGATTTAGTACTACACATCCCTTTGTTCTGTACTCCCCCCAGTACATCATTCAGAGTTTTTATTTCACTACCAGTATATCGTATTGTTTTCTGTACCGTAACAACATCCAGAAGCATATATAACTTGTTTTATCTTAGGTAATTATATTTGTTTTCCACTAGTTCTATCCCATACTCTGCTTCACTGATGTGACATTAGAGTCCTGATTGGGTGACATTTTAGACCTAATATTCGTCAGCGTCATCATATAATTTTGATGACAGATTAGGCTCATTacttcaatatactgtatgtatagtacACAGCAAACGAACGACATCATGTCAATTTAGAGAGGTCTACTGAATTGGACAGGTGTAAGGATTTCAACATAAAAGTCATATACTTCCCGGGAATCTGACCCACAATTATATTCTGCTTATAGAAAGTGTTCCAGTTATTTAGCATTGAACACTCTACATCTGTTAAAAACATTATCTTGTAATTCATTTTCAATGTATGAACACCATAAATGATTGTGTATTTATTAAATTTTTATTAATGATAAATTACGGTACATGAAATCCATCTATATCTGCATTTTAGTTCAACTTTGTTTGACTTGGTAATGATTACAtatgtaataaaaaaataaaaatggtttgATACAATAAAGTGTTTAAATTGGACAAACGTTTGTGTTTACTTCTTTAAACAAAACATATTATTCCAATTATAATCCATGCtaaaattaagcaataaggcccaagggggtgtggtatatggccaatacaccatggctaagggttgttcttagGCAAGACGCAAAGTGGAGTGCcttgatacagcccttagccgtgatatattggtcatatatcacaaaccccagcGGTGCCTAATTCCTATTATAAACAGGTTACCAATGTAAGtacagcagtaaaaatacatgttttgtcatacccgtggtatacggtctgatataccacggctgtcagccaatcagcattcagggcttgaatcACCCAATTTATAATCCATTTTAATT
>XM_021610718.2
AGCGCAGTATGCCCTTGCTTCCCTCTCTAGTACAGAACTGAAAGGAGACCgggcagaggaacagaggaacagaggaacacaggaacacagtAATAGTAGAGctggaaaagaaagaaagagactgAAAGAGTACGGCATagaaaggacagggagagagagagaaagggggtaataGAAGGGTACAGgtgtgaagagacagagagacagagatagagagacagagagacaggcatactcagagagacagagagacagacaggctcagagagacagagatagagagacagagagacagacagactcagagagacagagatagagagagaaagcgcTCGATAGTGATCTGTGCATCttctactctactactactactctaccaccagCAGGACCATGGAGACAGGCAGCCCCAGGAAGATCCAGTTCACCATGCCTCTCCTCGACTCACACCTGGACCCAGAGGCTGCTGAACAGATCAGAAGACGTCGGCCCACCCCTGCTACTCTGGTGGCTTCCAGTGACCAGTCTTCTCCAGAAATAGATGAAGACCGTCTTCCTAACCAGTTATACAAGGCAGCCCTGTTGAACTCTCCCAGGCAGAGGAGGAAGGGAGCAAGAGGCACGCCCACCATGAAAGaattgCAGTTCATGGTAGAACACCACCTGTACAAGCAGCAGCACGGTGGAGATGATGAGTGTTCCTCAGAGAGCTGTCTGTCAGACAGACCCAGCCCGGACACTCTGCCCaccggagaggaggaggagctggagcTACCGGAGGACGAGGAGGCCTGGGGAACCGGCGACAATGTCACTGCGGAGGCCTTCGAGAAGCTGCGCTGTCAGATGGAGgCAGAGTTTTCACGGGACAGTCTATCAGACGCTGCAGGGGGACATGAGTGCTCCTTCTCCAAGGAAGAAGTGGGATGTTCCACCGTCCCCATGGCAGcaacatcatcatcacaacaaaaacaacacacacaagcAGCGAGTCCAGAGGAGAAGAAAACAAAGAAACCCATCCAGGAATAAGAAGACAAATAGAACCATGGAACAGCCTCCACGCCAACCTGTcgtgtgtcccaaatggatccctattcccacagggctctggtcaaaaatagtgcaccatgtagggaataggttgccatttgggacctgATGTTCAGTTAATAACTACAGACAACAGGCAGACAAGTGATCATCCTTTTGATAAACAGACACACTGTAGATACGGAGACATCAGGATATATGTCTGGTCAGGTACTATACCGTGCAGGTGGAGAGATGACTAGGCGTTTATTTATGACTAGGCGTTTATTGTTTCTAATGATTTACTCATTTGATTGCCCCTACTAATCTGTAACTAATTATCTGATGTTTCAAACCAGGACAGGAAATATTTGGGTATTTTTCATGacagtttttggtttgttgcatACACAAACTGTAACGGCCTAGCACTCACATGTCTAATATGGCCCCTGTATAATACTCATAAATCCAAATATTGTCTCATGATTATTCTAAGATTGATTTGATGTTTTAGACATTCCGTCCAGGACTCTTGAAGGAACTAGACCTCGGTGGGCCAAAAGAGACTcccataaacaacaacaacaagaacagCATTTAGTCCTTATTCATATTTGTGCCACGACACACATTTGTGCCACGACAATAACATTGTCTATTTTTAAGAATCACAGGGCAGTATCACTGCATCACTTAGGGAACATCATTTCTCATATAGTGCACTAGCTTTGACCAGAGCCAAATGGAGTAGTGTACTACTGTATTATTGGGGACACGGTGCTTATTTGGGAGGCATCCTGGGAATCATCAATGACACAATCTGGAGCTGTGATCAGAGTGTTTTCGGTCTCTGTCTATTTGAGTCTCTGAAGTCTCCAAAACATATCTGATTAAGGGACCAATTCATTGGACAGGACTCTGGGTGAACTTTGATCTTTTAAAAACGTGTCTATTGACATCCCACGATCAACGTGTCTATTGACATCCCAGTCATGCATAGTACAGATTTAGTACTACACATCCCTTTGTTCTGTACTCCCCCCAGTACATCATTCAGAGTTTTTATTTCACTACCAGTATATCGTATTGTTTTCTGTACCGTAACAACATCCAGAAGCATATATAACTTGTTTTATCTTAGGTAATTATATTTGTTTTCCACTAGTTCTATCCCATACTCTGCTTCACTGATGTGACATTAGAGTCCTGATTGGGTGACATTTTAGACCTAATATTCGTCAGCGTCATCATATAATTTTGATGACAGATTAGGCTCATTacttcaatatactgtatgtatagtacACAGCAAACGAACGACATCATGTCAATTTAGAGAGGTCTACTGAATTGGACAGGTGTAAGGATTTCAACATAAAAGTCATATACTTCCCGGGAATCTGACCCACAATTATATTCTGCTTATAGAAAGTGTTCCAGTTATTTAGCATTGAACACTCTACATCTGTTAAAAACATTATCTTGTAATTCATTTTCAATGTATGAACACCATAAATGATTGTGTATTTATTAAATTTTTATTAATGATAAATTACGGTACATGAAATCCATCTATATCTGCATTTTAGTTCAACTTTGTTTGACTTGGTAATGATTACAtatgtaataaaaaaataaaaatggtttgATACAATAAAGTGTTTAAATTGGACAAACGTTTGTGTTTACTTCTTTAAACAAAACATATTATTCCAATTATAATCCATGCtaaaattaagcaataaggcccaagggggtgtggtatatggccaatacaccatggctaagggttgttcttagGCAAGACGCAAAGTGGAGTGCcttgatacagcccttagccgtgatatattggtcatatatcacaaaccccagcGGTGCCTAATTCCTATTATAAACAGGTTACCAATGTAAGtacagcagtaaaaatacatgttttgtcatacccgtggtatacggtctgatataccacggctgtcagccaatcagcattcagggcttgaatcACCCAATTTATAATCCATTTTAATT

Function

NR:

description
protein phosphatase 1 regulatory subunit 1A-like isoform X1

GO: NA

KEGG:

id description
K08050 PPP1R1A; protein phosphatase 1 regulatory subunit 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610719.2 False 3053 mRNA 0.43 8 80558564 80612782
XM_021610718.2 True 3060 mRNA 0.43 8 80558564 80612786

Neighbor

gene id symbol gene type direction distance location
LOC110529043 LOC106583712 coding downstream 205558 80261240 ~ 80353006 (-)
LOC110528575 LOC106583691 coding downstream 391285 80152879 ~ 80167279 (-)
LOC110528574 LOC106583691 coding downstream 430374 80111773 ~ 80128190 (-)
rab22a rab22a coding downstream 511905 80025960 ~ 80046659 (-)
LOC110528568 LOC106583688 coding downstream 533377 79990599 ~ 80025187 (-)
LOC110528585 LOC106583707 coding upstream 42787 80650590 ~ 80723518 (-)
LOC110528602 NA coding upstream 686121 81298907 ~ 81299848 (-)
LOC110528600 LOC106566189 coding upstream 688750 81301536 ~ 81313006 (-)
tma7 NA coding upstream 738424 81351210 ~ 81353282 (-)
LOC118965322 LOC106583721 coding upstream 810346 81423132 ~ 81430600 (-)
G653864 NA non-coding downstream 4786 80551042 ~ 80553778 (-)
G653846 NA non-coding downstream 32239 80525888 ~ 80526325 (-)
G653419 NA non-coding downstream 89656 80468368 ~ 80468908 (-)
G653358 NA non-coding downstream 144222 80414045 ~ 80414342 (-)
G653351 NA non-coding downstream 152413 80405939 ~ 80406151 (-)
G653909 NA non-coding upstream 32001 80644787 ~ 80645060 (-)
G653950 NA non-coding upstream 132339 80745125 ~ 80747556 (-)
G653977 NA non-coding upstream 165974 80778760 ~ 80780691 (-)
G653985 NA non-coding upstream 184388 80797174 ~ 80797725 (-)
G653274 NA other downstream 210997 80345802 ~ 80347567 (-)
G653015 NA other downstream 614836 79943201 ~ 79943728 (-)
G652578 ncoa5 other downstream 1103176 79454075 ~ 79457103 (-)
eya2 LOC106583664 other downstream 2246062 78209092 ~ 78312601 (-)
G655289 NA other upstream 902751 81515537 ~ 81516722 (-)
G655297 NA other upstream 923771 81536557 ~ 81537098 (-)
G655316 slc6a6 other upstream 1009617 81622403 ~ 81651265 (-)

Expression


Co-expression Network