LOC110529045 (LOC106583706)


Basic Information

Item Value
gene id LOC110529045
gene name LOC106583706
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 80751492 ~ 80760209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984189.1
GATAAACTACAGGGATAAAGCTCTTTCTCTGCCAgtcacacacagtgacacaacaCAGGCTCCAGGGACCAAACTGTTACTgtcagagacggagagagagaagaggaggtagACCTGAGCCTACAGTAAACCACTGATAACAGGGATTAATTTTTCTACACCTCCATGAAATCCTCTCCCAGACCTCATCATGGATATTGATTCTGTGTACCGGTATTTAGGTAGGGATAATCTATGGCTGTATGGCATTTCTACCTTCGTGGTTCTGTGGACGCTAGGCTGGCTGTACAgagacagtctggagatagaGGATATCAAGGAGAAGTATGTGTTTGTGACGGGCTGCGACTCTGGCTTCGGGAACTTGCTCTGTAAGAGGCTAGACCGACGGGGGTTCAGGGTGATAGCTGGGTGTCTCACAGACAAAGGGGCTGATGATCTGAAGAGGGCGACTGGGCCGTACCTGAAGACGGTTCTCCTAGACGTGACGAGCACCGGCAGTATACAGAAAGCTATGGAGTACACCAAGCAGGAGGTTGGAGATAACGGACTGTGGGGTATCGTGAACAACGCGGGGCGCTCCCTGCCCATGGGTCCCACAGAGTGGATGAGGATGGAGGACTATACCAGTACCCTGAAGGTCAACATGACGGGGGTGATAGAGATGACCCTCACCTTCCTGCCCCTCATCAAACAGGCCCAGGGGAGGATTGTCAACGTGGCCTCAGTGCTGGGTAGGGTGGCGGCTAACGGAGGGGGATACTGCATCTCTAAGTTCGCTGTGGAGTCCTTCTCAGACTGCCTCAGGAGGGATATCCACTACTTTGGGATCAAGGTGTGCATCATTGAACCAGGTTTCTTTAAGACAGCGGTTACCAGTCTGGATCCCATTGAGAGAGAGCTGCATCGCCTGTGGAACCAGCTCACACCTGAAGTAAAGGCCAGCTACGGAGACAAATACCTGGATAAGTACATCCAAATCCAACGGTTGATCATGAATGCATCTTGTGACTCTGACCTGAGTAAAGTGACTAACTGCATGGAGCATGCCTTGATGTCTTCCTACCCCCGAACCCGCTACAGTGCCGGCTGGGACGCCAAGTTTGGATGGATCCCTCTCTCTTACATGCCATCCTGTGTCATCGATATTGGGCTAAAACTGGTGATGCCACGTCCTGCTGAGAGTGTGTAGAGTTGCATTTAAAATAGTTAACacgatacaatacaatacaatcctatactaaacaataaaaaaaaaaaacagtatattGTTTTGAGTTTAAACGTACAAAATGTAGAGTAGTCTACACAATTTTACCTGGAAAACGTAATTCAATGCATTTCTTTACAGGTTTACTGTCGGTGTTTTGCAGCTAGATTATATCCTAGAGTTATGAAAGAAAACAACATGGACTATTTAAATAGTTATGTTTGGGAACCCACTGTGCCTTTTTTTGTCACCATTATTTATGTTGCTAAATTTCAAGCAATATTCAAAGTTTTACAGGCAAAAGCTTTATTACCTACAACAAGCAGTTTGAACATCGTTCAATAAGGCTGAAAGAACTGATGTCCATTATTATGAACACAAATAATAAAATGAGACCAATTCATGATTTTCAAAGCT
>XM_036984190.1
GATAAACTACAGGGATAAAGCTCTTTCTCTGCCAgtcacacacagtgacacaacaCAGGCTCCAGGGACCAAACTGTTACTgtcagagacggagagagagaagaggaggtagACCTGAGCCTACAGTAAACCACTGATAACAGGGATTAATTTTTCTACACCTCCATGAAATCCTCTCCCAGACCTCATCATGGATATTGATTCTGTGTACCGGTATTTAGGGGATAATCTATGGCTGTATGGCATTTCTACCTTCGTGGTTCTGTGGACGCTAGGCTGGCTGTACAgagacagtctggagatagaGGATATCAAGGAGAAGTATGTGTTTGTGACGGGCTGCGACTCTGGCTTCGGGAACTTGCTCTGTAAGAGGCTAGACCGACGGGGGTTCAGGGTGATAGCTGGGTGTCTCACAGACAAAGGGGCTGATGATCTGAAGAGGGCGACTGGGCCGTACCTGAAGACGGTTCTCCTAGACGTGACGAGCACCGGCAGTATACAGAAAGCTATGGAGTACACCAAGCAGGAGGTTGGAGATAACGGACTGTGGGGTATCGTGAACAACGCGGGGCGCTCCCTGCCCATGGGTCCCACAGAGTGGATGAGGATGGAGGACTATACCAGTACCCTGAAGGTCAACATGACGGGGGTGATAGAGATGACCCTCACCTTCCTGCCCCTCATCAAACAGGCCCAGGGGAGGATTGTCAACGTGGCCTCAGTGCTGGGTAGGGTGGCGGCTAACGGAGGGGGATACTGCATCTCTAAGTTCGCTGTGGAGTCCTTCTCAGACTGCCTCAGGAGGGATATCCACTACTTTGGGATCAAGGTGTGCATCATTGAACCAGGTTTCTTTAAGACAGCGGTTACCAGTCTGGATCCCATTGAGAGAGAGCTGCATCGCCTGTGGAACCAGCTCACACCTGAAGTAAAGGCCAGCTACGGAGACAAATACCTGGATAAGTACATCCAAATCCAACGGTTGATCATGAATGCATCTTGTGACTCTGACCTGAGTAAAGTGACTAACTGCATGGAGCATGCCTTGATGTCTTCCTACCCCCGAACCCGCTACAGTGCCGGCTGGGACGCCAAGTTTGGATGGATCCCTCTCTCTTACATGCCATCCTGTGTCATCGATATTGGGCTAAAACTGGTGATGCCACGTCCTGCTGAGAGTGTGTAGAGTTGCATTTAAAATAGTTAACacgatacaatacaatacaatcctatactaaacaataaaaaaaaaaaacagtatattGTTTTGAGTTTAAACGTACAAAATGTAGAGTAGTCTACACAATTTTACCTGGAAAACGTAATTCAATGCATTTCTTTACAGGTTTACTGTCGGTGTTTTGCAGCTAGATTATATCCTAGAGTTATGAAAGAAAACAACATGGACTATTTAAATAGTTATGTTTGGGAACCCACTGTGCCTTTTTTTGTCACCATTATTTATGTTGCTAAATTTCAAGCAATATTCAAAGTTTTACAGGCAAAAGCTTTATTACCTACAACAAGCAGTTTGAACATCGTTCAATAAGGCTGAAAGAACTGATGTCCATTATTATGAACACAAATAATAAAATGAGACCAATTCATGATTTTCAAAGCT

Function

NR:

description
retinol dehydrogenase 7-like isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11154 RDH16; retinol dehydrogenase 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984189.1 False 1627 mRNA 0.46 6 80751492 80760209
XM_036984190.1 True 1624 mRNA 0.46 6 80751492 80760209
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110528584 bloc1s1 coding upstream 6005 80736845 ~ 80747734 (+)
LOC110528588 LOC106583711 coding upstream 192423 80525916 ~ 80559069 (+)
LOC110529044 LOC106583700 coding upstream 496273 80253966 ~ 80255219 (+)
LOC118965367 NA coding upstream 527014 80222199 ~ 80224478 (+)
LOC110528573 LOC106583691 coding upstream 653537 80086570 ~ 80097955 (+)
LOC110528580 LOC106583705 coding downstream 3461 80738696 ~ 80793513 (+)
LOC110528579 asic1 coding downstream 88924 80849133 ~ 81183921 (+)
LOC110528578 smarcd1 coding downstream 463367 81223576 ~ 81256912 (+)
cers5 LOC106583695 coding downstream 501697 81261906 ~ 81298919 (+)
LOC110528601 bcdin3d coding downstream 539238 81299447 ~ 81301281 (+)
G653512 NA non-coding upstream 73256 80652508 ~ 80678236 (+)
G653523 NA non-coding upstream 80218 80670907 ~ 80671274 (+)
G653508 NA non-coding upstream 108711 80642367 ~ 80642781 (+)
G653459 NA non-coding upstream 201381 80549885 ~ 80550111 (+)
G653458 NA non-coding upstream 202083 80548583 ~ 80549409 (+)
G653642 NA non-coding downstream 117783 80877992 ~ 80881440 (+)
G653703 NA non-coding downstream 205164 80965373 ~ 80965924 (+)
G653719 NA non-coding downstream 231986 80992195 ~ 81054341 (+)
G653804 NA non-coding downstream 375467 81135676 ~ 81136043 (+)
G653808 NA non-coding downstream 380382 81140591 ~ 81140879 (+)
G652845 NA other upstream 758633 79990609 ~ 79992859 (+)
G651075 NA other upstream 2335485 78359416 ~ 78416007 (+)
G650827 NA other upstream 2642090 78107406 ~ 78109402 (+)
G650261 NA other upstream 2918431 77831000 ~ 77833061 (+)
G653803 NA other downstream 371971 81132180 ~ 81133770 (+)
G654244 NA other downstream 448947 81209156 ~ 81209544 (+)
G654265 LOC106611445 other downstream 566114 81326323 ~ 81352422 (+)
G654603 NA other downstream 814733 81574942 ~ 81575423 (+)
G654673 NA other downstream 1007016 81744527 ~ 81808727 (+)

Expression

LOC110529045(LOC106583706) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 5.
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LOC110529045(LOC106583706) Expression in each Bioproject

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LOC110529045(LOC106583706) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network