sec13 (sec13)


Basic Information

Item Value
gene id sec13
gene name sec13
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 82121338 ~ 82132214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610740.2
CTAATGCTCACCACATAGGAAATTATCTTTCACGGAACTATTTGtaagcgaaatgcttgtttcaACCGGAACGTTGGTGCACGCACACGGAAGTTGTTTTTTTCAGTGGTTGTGAAGTTGTTGCCACGTCGTTCTTGATACATCGTAAAACCGAAATATATTGATAACAGGGTTACACGTCTGGCAGTGCAATTTCTCTGTTTAGGTACAAAGTCATTACGATAATCTTCAATCATGGTTTCCGTCATCAACACGGTGGACACCTCCCACGAGGACATGATCCATGATGCCCAGATGGATTATTATGGCACCAGACTGGCCACCTGCTCTTCTGACAGGTCTGTCAAGATCTTCGATGTTAAAAACGGAGGACAAATCCTAGTGGCAGATCTGAGAGGccaTGAGGGTCCTGTGTGGCAGGTGGCCTGGGCTCACCCCATGTACGGCAACATCCTGGCCTCCTGTTCCTATGACAGGAAGGTGATCATATGGAAGGAAGAGAACGGAACCTGGGATAAGATGTACGAGTACACTGGACATGACTCTTCAGTGAATTCAGTGTGCTGGGGTCCCTATGACTTTGGTCTGATCCTGGCCTGTGGCAGCTCGGATGGAGCCATCTCATTGGTCACCTGTTCTGGGGATCAACAGTGGGACATTAAGAAGATCAGCAATGCACACACAATTGGCTGTAACGCAGTGAGCTGGGCTCCATCTGTGGTGCCAGGTAGTCTGATAGACCAGCCCTCGGGTCAGAAACCCAACTTCATCAAGAGGTTTGTCTCAGGAGGCTGCGACAACCTGGTCAAACTCTGGAAAGAGGAGGATGGCCAATGGAAGGAGGACCAGAAGCTGGAGGCTCACAGTGATTGGGTCAGAGATGTAGGCTGGGCTCCCTCCATAGGACTACCCACCAGCACCATCGCCAGCTGCTCTCAGGACGGCAGGGTCTTCATCTGGACGTGTGACGACCTTTCAGGCAACACGTGGACGGCTAAACTCCTCCACAAGTTCAACGACGTGGTGTGGCATGTCAGCTGGTCCGTCACTGGAAACATCCTGGCCGTGTCCGGGGGGGATAACaagGTGACGTTGTGGAAGGAGTCGGCAGACGGCCAGTGGGCCTGTATCAGCGACGTCAACAAAGGCCAGGGAGCCGTATCGTCCATCGCAGACGGAGCGACGAACGAGCAGTGATCCAGGCACAGAAGGACATtccactcctcctcctacccCCACAGAGAATGAATGGGCTACTACTCCAGAGACACTTCTACCATCTATCCTAGTCCCAGATCTGGGCTAACTACCACCTGTTAAActccatagtggcccctctctctctttctctaacagACTTTAAGACCATATTTCATGATGAAATTTCTCTAAAGACCGATTGAGGTTTCATCGTTCAGTTTACGATGATCCAGATTTAAATGGTTACCATTGAGGGAAACTACCTTAATTAAAACCTTAATTAAAACCTTAATTAAAACCTGCTCAAAACATCCATAGATTACAAAACAATGTTCTGTCAAATTTGAAACTGTTTTTGTGAAAGATTTTCTTCCAATTGATTGTTAGAAACAAGAATGTTATGTTTTCATATTTCAAATAATTAAAAAGAACTTCAAGGAAAAA
>XM_036984220.1
CTAATGCTCACCACATAGGAAATTATCTTTCACGGAACTATTTGtaagcgaaatgcttgtttcaACCGGAACGTTGGTGCACGCACACGGAAGTTGTTTTTTTCAGTGGTTGTGAAGTTGTTGCCACGTCGTTCTTGATACATCGTAAAACCGAAATATATTGATAACAGGGTTACACGTCTGGCAGTGCAATTTCTCTGTTTAGGTACAAAGTCATTACGATAATCTTCAATCATGGTTTCCGTCATCAACACGGTGGACACCTCCCACGAGGACATGATCCATGATGCCCAGATGGATTATTATGGCACCAGACTGGCCACCTGCTCTTCTGACAGGTCTGTCAAGATCTTCGATGTTAAAAACGGAGGACAAATCCTAGTGGCAGATCTGAGAGGccaTGAGGGTCCTGTGTGGCAGGTGGCCTGGGCTCACCCCATGTACGGCAACATCCTGGCCTCCTGTTCCTATGACAGGAAGGTGATCATATGGAAGGAAGAGAACGGAACCTGGGATAAGATGTACGAGTACACTGGACATGACTCTTCAGTGAATTCAGTGTGCTGGGGTCCCTATGACTTTGGTCTGATCCTGGCCTGTGGCAGCTCGGATGGAGCCATCTCATTGGTCACCTGTTCTGGGGATCAACAGTGGGACATTAAGAAGATCAGCAATGCACACACAATTGGCTGTAACGCAGTGAGCTGGGCTCCATCTGTGGTGCCAGGTAGTCTGATAGACCAGCCCTCGGGTCAGAAACCCAACTTCATCAAGAGGTTTGTCTCAGGAGGCTGCGACAACCTGGTCAAACTCTGGAAAGAGGAGGATGGCCAATGGAAGGAGGACCAGAAGCTGGAGGCTCACAGTGATTGGGTCAGAGATGTAGGCTGGGCTCCCTCCATAGGACTACCCACCAGCACCATCGCCAGCTGCTCTCAGGACGGCAGGGTCTTCATCTGGACGTGTGACGACCTTTCAGGCAACACGTGGACGGCTAAACTCCTCCACAAGTTCAACGACGTGGTGTGGCATGTCAGCTGGTCCGTCACTGGAAACATCCTGGCCGTGTCCGGGGGGGATAACaagGTGACGTTGTGGAAGGAGTTGGAAAGACTGCCAGTGTTGTTTTCTGATGTATATTGTTGTCGGCTGTCTCCAGGTGACGTTGTGGAAGGAGTCGGCAGACGGCCAGTGGGCCTGTATCAGCGACGTCAACAAAGGCCAGGGAGCCGTATCGTCCATCGCAGACGGAGCGACGAACGAGCAGTGATCCAGGCACAGAAGGACATtccactcctcctcctacccCCACAGAGAATGAATGGGCTACTACTCCAGAGACACTTCTACCATCTATCCTAGTCCCAGATCTGGGCTAACTACCACCTGTTAAActccatagtggcccctctctctctttctctaacagACTTTAAGACCATATTTCATGATGAAATTTCTCTAAAGACCGATTGAGGTTTCATCGTTCAGTTTACGATGATCCAGATTTAAATGGTTACCATTGAGGGAAACTACCTTAATTAAAACCTTAATTAAAACCTTAATTAAAACCTGCTCAAAACATCCATAGATTACAAAACAATGTTCTGTCAAATTTGAAACTGTTTTTGTGAAAGATTTTCTTCCAATTGATTGTTAGAAACAAGAATGTTATGTTTTCATATTTCAAATAATTAAAAAGAACTTCAAGGAAAAA

Function

symbol description
sec13 Predicted to enable structural molecule activity. Acts upstream of or within several processes, including animal organ development; extracellular matrix constituent secretion; and opsin transport. Located in endoplasmic reticulum exit site. Is expressed in several structures, including alar plate midbrain region; digestive system; optic vesicle; pectoral fin musculature; and skeletal element. Orthologous to human SEC13 (SEC13 homolog, nuclear pore and COPII coat complex component).

NR:

description
PREDICTED: protein SEC13 homolog isoform X1

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0070278 extracellular matrix constituent secretion biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0036372 opsin transport biological_process
GO:0051216 cartilage development biological_process
GO:0007029 endoplasmic reticulum organization biological_process
GO:0001889 liver development biological_process
GO:0055123 digestive system development biological_process
GO:0010842 retina layer formation biological_process
GO:0070971 endoplasmic reticulum exit site cellular_component

KEGG:

id description
K14004 SEC13; protein transport protein SEC13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610740.2 False 1644 mRNA 0.48 9 82121338 82132214
XM_036984220.1 True 1717 mRNA 0.48 9 82121338 82132214
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Neighbor

gene id symbol gene type direction distance location
LOC110528605 grip2 coding downstream 128742 81666686 ~ 81992596 (-)
LOC118965322 LOC106583721 coding downstream 690738 81423132 ~ 81430600 (-)
tma7 NA coding downstream 768056 81351210 ~ 81353282 (-)
LOC110528600 LOC106566189 coding downstream 808332 81301536 ~ 81313006 (-)
LOC110528602 NA coding downstream 821595 81298907 ~ 81299848 (-)
LOC110528607 LOC106566201 coding upstream 13054 82145268 ~ 82152444 (-)
LOC118965368 NA coding upstream 727167 82859381 ~ 82860786 (-)
LOC110525201 LOC106583753 coding upstream 740495 82872709 ~ 83038973 (-)
LOC118965369 NA coding upstream 923787 83056001 ~ 83056432 (-)
LOC118965325 NA coding upstream 1427324 83559538 ~ 83560418 (-)
G655604 NA non-coding downstream 1757 82119354 ~ 82119581 (-)
G655597 NA non-coding downstream 10820 82110200 ~ 82110518 (-)
G655590 NA non-coding downstream 16723 82104396 ~ 82104615 (-)
G655587 NA non-coding downstream 24390 82096512 ~ 82096948 (-)
G655586 NA non-coding downstream 28316 82092821 ~ 82093022 (-)
G655610 NA non-coding upstream 385 82132599 ~ 82132811 (-)
G655612 NA non-coding upstream 3859 82136073 ~ 82136910 (-)
G655596 NA non-coding upstream 4977 82137191 ~ 82143327 (-)
G655613 NA non-coding upstream 6204 82138418 ~ 82139002 (-)
G655621 NA non-coding upstream 48062 82180276 ~ 82180734 (-)
G655469 NA other downstream 205828 81914708 ~ 81915510 (-)
G655447 NA other downstream 249821 81859371 ~ 81871517 (-)
G655433 NA other downstream 288307 81832678 ~ 81833031 (-)
G655387 NA other downstream 367372 81753555 ~ 81753966 (-)
G655316 slc6a6 other downstream 470073 81622403 ~ 81651265 (-)
G655651 NA other upstream 93738 82225952 ~ 82226545 (-)
G655715 LOC106583745 other upstream 196184 82328398 ~ 82333651 (-)
G656314 NA other upstream 1195265 83327479 ~ 83328180 (-)
G656671 dag1 other upstream 1476318 83608532 ~ 83615998 (-)
LOC110528632 LOC105007334 other upstream 1822033 83954195 ~ 84332909 (-)

Expression

sec13(sec13) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 75.
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sec13(sec13) Expression in each Bioproject

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sec13(sec13) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network