LOC110529047 (LOC106583744)


Basic Information

Item Value
gene id LOC110529047
gene name LOC106583744
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 82162427 ~ 82180242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984221.1
GTTTGGCACCACTTCAGCGTGTTGGGGAAAAGCTTTAAGAGCTCTGGTGTAGGCGGTATTAAAGGGAGGGTCGACAGTCTGGCGATAGTGGAGCCGCTACAATTCTATCATCTCGTTCATTTCATTTCTTAAGATGCTCAATCCTCATGAGGGCCAAGCGCTCTATGCCCCCACAGTGCCCTCCCCAGGCCCCATGGTTCCCCCAGCTAGCATGTTTGGCAATGTACCAGGGTACGAGGACACTTTAGCTGGCGGAGGAGGTGGATATCTCCCCCCACCGATGCCCTTACACCCGAATCGCGATCCAGAGCCTGCACCCGTACCACAAGACTGGAACATCCCCTCCATCACTGAAGATGTGGCGCGGGAGCGTTTTATAATGTACGCGTCTGGTAAATGCTGCTATAACAACGCCCCTGCCAAGGATGGAGTCATCACTAACATGCAGGCGTTCAACACCTATCGGTACCGTTTGGAGACATTCACAGAGTCTAGATCTACAGAGTGGGCCACCAAGCCTTATGAAGGTGAACTGGCAGACTTCTACACGCAGACTGCCCCACGGCCGTGGGAAATCCCAGTGAccggtccctccctgtttcaaaaCCACGAGGAGAACATAAAAGTCCCGTACACTTCATCTAACaagCCCTGCCACACTTGTAGTGCCTCTGGAAAGATGCCCTGCCATGAGTGCAATGGATCTGGaacaAAAGTTTGTTGGGTCTGCAATGGATCTGGCAAACAGGGAGGAGATAGTCCCTGCAATCAATGCAATCAAAGAGGAAGGGAGAACTGCTCTAAATGTCATGGTAACGGGACTAAAGAATGTGAGACCTGCAAGGGCAAGCAGCAACTGTTGACCTACATCAACCTTAAAGTCGAGTGGAAGAATAATGTTGAAGACTATGTTGTGGAGCAGAACAGTGGGCTGGAGGTTGACGATCTGAGCGATGTGACTGGAAAGACACTCTTCAAAAACGCCCAGTACATGCTGTATCCAGTGTATGGCTTCCCAGATCCGTCTTTATCCCAGGCTTCAGACCGTTTGGTTAGAGAACACCAGGCGAAATACTCCCAGAACTCCCGCATCCTTCAACAGCAACAAACCATCGAGTTGATTCCCATCACCAAGGTGACCTACAAGTGGAAGGGAGGCATCCATGTTTACTATATCTATGGGAACGAACACCAGGTCAAAGCTCCTGACTACCCTGCCACCTGCTGCTGCTCCATCATGTAACCAGTcatgtcagccagccagccagtcagtcagccagccagccagccagtcagccagtcagccagccagccagccagccacttaGCCATACCTCTTTTGGTGAATGCGTCACCAGGCCAGCCCAATACAGCTGGCCTTGACTCTGCTTAGTTCAGCTCTGTATGAAAAAAGGTTGAGTTTATCAGTttgctagttagttagctagttagttaggtAGGTATTGTAGGTAGTTCTTTAGGGCCTTTTACCTTTTCCCCAGGAGTTTAGGGCTAAGTGTATTCTAATCAGTATACTAcatgttgttttttatttttataataattATTGCAGCCCTGGAATTTCATgaatttgttttttgtttcaaCTTTCAATTTTTCACAAGTAAATGACTTTATGCAAAGATATAGAAAAACTAAAGGCTATTGAAGCAAATTGCTGCATGTCTGATTCATTCTTGTTACATAGACTTTAGTACAGTCAATAAAGTGAAAAGGTGatattattattctataatgaaataaataaataaaatcattcaaaCTTCAAAGAGAA

Function

NR:

description
protein SSUH2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984221.1 True 1795 mRNA 0.47 12 82162427 82180242
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118965324 NA coding upstream 17252 82142401 ~ 82145175 (+)
LOC110528604 LOC106583724 coding upstream 354527 81794468 ~ 81807900 (+)
LOC110528591 slc6a6 coding upstream 509486 81606542 ~ 81652941 (+)
LOC118965323 NA coding upstream 552397 81606847 ~ 81610030 (+)
lsm3 lsm3 coding upstream 724235 81432052 ~ 81438192 (+)
LOC110529049 LOC106583745 coding downstream 18091 82198333 ~ 82329870 (+)
dock3 LOC106583746 coding downstream 174158 82354400 ~ 82764765 (+)
LOC110525202 LOC106583751 coding downstream 593535 82773777 ~ 82778043 (+)
LOC110525199 LOC106583750 coding downstream 598131 82778373 ~ 82782922 (+)
LOC118965402 NA coding downstream 975377 83155619 ~ 83155719 (+)
G654889 NA non-coding upstream 1806 82160297 ~ 82160621 (+)
G654878 LOC106566201 non-coding upstream 9931 82145270 ~ 82152496 (+)
G654873 NA non-coding upstream 27261 82134946 ~ 82135166 (+)
G654863 sec13 non-coding upstream 30234 82129832 ~ 82132193 (+)
G654858 NA non-coding downstream 69 82180311 ~ 82181036 (+)
G654904 NA non-coding downstream 11616 82191858 ~ 82192058 (+)
G654907 NA non-coding downstream 151108 82331350 ~ 82332669 (+)
G654995 NA non-coding downstream 184061 82364303 ~ 82365699 (+)
G655014 NA non-coding downstream 216823 82397065 ~ 82399774 (+)
G654782 NA other upstream 211035 81951002 ~ 81951392 (+)
G654673 NA other upstream 353700 81744527 ~ 81808727 (+)
G654603 NA other upstream 587004 81574942 ~ 81575423 (+)
G654265 LOC106611445 other upstream 811227 81326323 ~ 81352422 (+)
G654244 NA other upstream 952883 81209156 ~ 81209544 (+)
G655042 NA other downstream 278843 82459085 ~ 82459667 (+)
G656125 NA other downstream 975772 83156014 ~ 83156319 (+)
G656264 NA other downstream 1086906 83267148 ~ 83272209 (+)
G656551 NA other downstream 1378595 83558837 ~ 83560518 (+)
G657228 NA other downstream 2323307 84503549 ~ 84520418 (+)

Expression

LOC110529047(LOC106583744) Expression in all Baseline Samples

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LOC110529047(LOC106583744) Expression in each Bioproject

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LOC110529047(LOC106583744) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network