LOC110525202 (LOC106583751)


Basic Information

Item Value
gene id LOC110525202
gene name LOC106583751
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 82773777 ~ 82778043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605169.2
GTGTTTAGCAGGAAGCTTCGCAGAATCAGGACATTGCGTGCTCACTTTACCGGTGTCGACTCTGGAGGCTCATGTGTAGCTGTCATTTGTAGCTTAATAGTTTTGTATCGTTACGTTTACATCTAACTAGCTAAAAATAGAATACGTTATTCATCGTAAAATGTTGTGTTTGAGTAGTTTGTCGGTCGCCCTCGCGGCGCTAGCGTTGGTACCGAGTAGTAGCGACGCTTTGAAAGATGGGGAGTGTGAAGTGTGCGTGAGCTTCCTGGGTCGGTTCTACCAGTCATTGCAAGACAATCATGTTAAATTCACCAGCGCAGACATCGAGAAGGACCTCGTCAAAACCTGCAAAGATGCCAAGGGCAAGGAAAACCGCTTTTGTTACTACATTGGTGGAAcaaatgatgcagccaccaaaATCCTCAACGAGATCTCCAAGCCCCTGAGCTACCACACACCAGTGGACAAGATCTGTGAGAAACTAAAGAAGAAGGACAGTCAGATCTGTGAACTGAAatatgACAAACAGGTGGATCTGAGCACAGTGGACCTGAAGAAGCTGAAGGTGAAGGACTTAAAGAAGATCCTGGAGGAGTGGGGAGAGTCGTGTAAAGGCTGTGCGGAAAAGTCTGACTTCATCCGCAAGATCAATGAACTCATGCCCAAGTACGCCCCCAACGCAGCCCAAGCAAGGACTGATCTGTAACAGaatggaggggaagaggggattCAGACCTGGGTTTGTGTTCAGTGTTtcggagtaggagtgctgatctaggatccgtttagcctttttttttttttacatcataaTGGATGAGAAATGGCGGGACCCACCTGATCCTAGGTCACGCTTCAACTTTGACACCCTGTgtcccaaatagtaccctattctcctatatagtgcactacttttgaccggagctctgggtcctggtcagaaaTAGTGAAccaagtagggaatagggtgccatttggggggggATACTTTGTCACTAGGGGCCATGGTGGCCCTGAGGTTATTTTGTGGTGTGAAATGTTCGCTGTGCGGTATATGAACCACCCGACAGTCTGTACATGCCCTTTTAGTTTCTTTTTTCGAAGGGATAGCCTTTATTTGACTTTAATTATTAACGGTTTAATAAAATAGAACAGGGATGGACAAGCTTTTAGGCAGAGAGTCCTAGACAGTGTGGATGCAGGGATTTTATTCCAGGCAAGCAGTAAGTAAAGTTCCTGATTCTACTAATCAGTTTGCATATCGAGACCTTGAGTTGTGATACTGTGGTGTGACACTGCTTGGCTGGAACAAGTACCTGCACCCATACTGTCCCTAAACCTCTATCGATAAGGGTGGCCACCCCGGAAAGGAAATAGAATTTAAGATGGAGGGGAAAAGAAATGAGAAGACAACTTGAAAGGAATTTGTGCTGTTCTTTCACACTGAACCTTTCATGTAAGACCTAGTGTTTGTTACAACTGTGCTCTACTTTTTCATTAAAAAATGAAAACCCAGTGTCAAGTGCCATGA

Function

NR:

description
PREDICTED: mesencephalic astrocyte-derived neurotrophic factor-like

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process

KEGG:

id description
K22556 MANF, ARMET; mesencephalic astrocyte-derived neurotrophic factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605169.2 True 1531 mRNA 0.45 4 82773777 82778043

Neighbor

gene id symbol gene type direction distance location
dock3 LOC106583746 coding upstream 9012 82354400 ~ 82764765 (+)
LOC110529049 LOC106583745 coding upstream 443907 82198333 ~ 82329870 (+)
LOC110529047 LOC106583744 coding upstream 593535 82162427 ~ 82180242 (+)
LOC118965324 NA coding upstream 628602 82142401 ~ 82145175 (+)
LOC110528604 LOC106583724 coding upstream 965877 81794468 ~ 81807900 (+)
LOC110525199 LOC106583750 coding downstream 330 82778373 ~ 82782922 (+)
LOC118965402 NA coding downstream 377576 83155619 ~ 83155719 (+)
LOC118965370 NA coding downstream 487493 83265536 ~ 83310372 (+)
dag1 dag1 coding downstream 776240 83554283 ~ 83616043 (+)
LOC110529053 LOC106583755 coding downstream 933318 83711361 ~ 83712203 (+)
G654983 NA non-coding upstream 1728 82690163 ~ 82772049 (+)
G655126 NA non-coding upstream 135940 82637308 ~ 82637837 (+)
G655106 NA non-coding upstream 173949 82598823 ~ 82599828 (+)
G655070 NA non-coding upstream 206957 82516943 ~ 82566820 (+)
G655040 NA non-coding upstream 319057 82454080 ~ 82454720 (+)
G655190 LOC106583753 non-coding downstream 94684 82872727 ~ 82876040 (+)
G655206 NA non-coding downstream 120702 82898745 ~ 82899477 (+)
G655209 NA non-coding downstream 124050 82902093 ~ 82902423 (+)
G655210 NA non-coding downstream 124789 82902832 ~ 82905957 (+)
G655241 NA non-coding downstream 188469 82966512 ~ 82967475 (+)
G655042 NA other upstream 314110 82459085 ~ 82459667 (+)
G654782 NA other upstream 822385 81951002 ~ 81951392 (+)
G654673 NA other upstream 965050 81744527 ~ 81808727 (+)
G654603 NA other upstream 1198354 81574942 ~ 81575423 (+)
G654265 LOC106611445 other upstream 1422577 81326323 ~ 81352422 (+)
G656125 NA other downstream 377971 83156014 ~ 83156319 (+)
G656264 NA other downstream 489105 83267148 ~ 83272209 (+)
G656551 NA other downstream 780794 83558837 ~ 83560518 (+)
G657228 NA other downstream 1725506 84503549 ~ 84520418 (+)
G657254 NA other downstream 1773953 84551996 ~ 84554773 (+)

Expression


Co-expression Network