Item | Value |
---|---|
gene id | dag1 |
gene name | dag1 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048571.1 |
NCBI id | CM023225.2 |
chromosome length | 90918291 |
location | 83554283 ~ 83616043 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
dag1 | Enables laminin binding activity. Acts upstream of or within several processes, including T-tubule organization; skeletal muscle organ development; and somatic muscle development. Located in sarcolemma. Is expressed in several structures, including mesoderm; nervous system; pronephros; somite; and trunk musculature. Used to study muscular dystrophy-dystroglycanopathy. Human ortholog(s) of this gene implicated in Duchenne muscular dystrophy; autosomal recessive limb-girdle muscular dystrophy type 2D; autosomal recessive limb-girdle muscular dystrophy type 2P; congenital muscular dystrophy-dystroglycanopathy type A9; and inclusion body myositis. Orthologous to human DAG1 (dystroglycan 1). |
description |
---|
dystroglycan-like |
id | description |
---|---|
K06265 | DAG1; dystroglycan 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021610760.2 | False | 8777 | mRNA | 0.45 | 3 | 83554283 | 83616043 |
XM_036984238.1 | True | 8388 | mRNA | 0.45 | 3 | 83555227 | 83616043 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118965370 | NA | coding | upstream | 243911 | 83265536 ~ 83310372 (+) |
LOC118965402 | NA | coding | upstream | 398564 | 83155619 ~ 83155719 (+) |
LOC110525199 | LOC106583750 | coding | upstream | 771361 | 82778373 ~ 82782922 (+) |
LOC110525202 | LOC106583751 | coding | upstream | 776240 | 82773777 ~ 82778043 (+) |
dock3 | LOC106583746 | coding | upstream | 789518 | 82354400 ~ 82764765 (+) |
LOC110529053 | LOC106583755 | coding | downstream | 95318 | 83711361 ~ 83712203 (+) |
nicn1 | nicn1 | coding | downstream | 143695 | 83759738 ~ 83782465 (+) |
LOC118965393 | NA | coding | downstream | 184568 | 83800611 ~ 83802600 (+) |
LOC110528627 | stl3 | coding | downstream | 262299 | 83878342 ~ 83881586 (+) |
LOC118965371 | NA | coding | downstream | 756154 | 84372197 ~ 84401519 (+) |
G656459 | NA | non-coding | upstream | 60588 | 83493305 ~ 83493695 (+) |
G656448 | NA | non-coding | upstream | 79000 | 83474847 ~ 83475283 (+) |
G656436 | NA | non-coding | upstream | 106746 | 83447315 ~ 83447537 (+) |
G656435 | NA | non-coding | upstream | 107073 | 83446978 ~ 83447210 (+) |
G656383 | NA | non-coding | upstream | 157263 | 83396734 ~ 83397020 (+) |
G656580 | NA | non-coding | downstream | 730 | 83616773 ~ 83617524 (+) |
G656583 | NA | non-coding | downstream | 4816 | 83620859 ~ 83622188 (+) |
G656760 | NA | non-coding | downstream | 124112 | 83740155 ~ 83740369 (+) |
G656808 | NA | non-coding | downstream | 174109 | 83790152 ~ 83790443 (+) |
G656810 | NA | non-coding | downstream | 178556 | 83794599 ~ 83795035 (+) |
G656264 | NA | other | upstream | 282074 | 83267148 ~ 83272209 (+) |
G656125 | NA | other | upstream | 397964 | 83156014 ~ 83156319 (+) |
G655042 | NA | other | upstream | 1094616 | 82459085 ~ 82459667 (+) |
G654782 | NA | other | upstream | 1602891 | 81951002 ~ 81951392 (+) |
G654673 | NA | other | upstream | 1745556 | 81744527 ~ 81808727 (+) |
G657228 | NA | other | downstream | 887506 | 84503549 ~ 84520418 (+) |
G657254 | NA | other | downstream | 935953 | 84551996 ~ 84554773 (+) |
G657292 | NA | other | downstream | 996786 | 84612829 ~ 84618717 (+) |
G657481 | NA | other | downstream | 1390436 | 85006479 ~ 85007498 (+) |
G658885 | NA | other | downstream | 2270549 | 85886592 ~ 85887121 (+) |