LOC110528627 (stl3)


Basic Information

Item Value
gene id LOC110528627
gene name stl3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 83878342 ~ 83881586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984242.1
CACATAACATAAATACCAGGTGTATTGGAGCTTGTTATCATCAGTTGCTTTTTCTCTGTTAGTACCACTCCTGTACCTGGCATCATGTGCATTTTGAGACTGACGGTGGTCACATTGCTGGCTACAGCTTGCTGCACACTAACAGATggagCAATCAGCATCACGTGTGAAGGCTCTGATGCTTTACTGCAATGTGATGGAGGTAAGATCCATATCAAGCGTGCGAACTACGGTCGTCGTCAACACGATGTGTGTTCTATTGGGCGCCCTGATCACCAACTCACCGACACCAACTGCCTCAGCCAATCCTCCACCAGCAAGATGGCAGAAAGATGCGGTGGGAAGAGCGAGTGTATTGTCCCTGCATCCAATTTCGTTTTTGGAGACCCCTGTGTCGGGACTTATAAGTACCTGGACACCAAATACTCCTGTGTCCAACAGCAAGAAACAATAAGCAGCATCATATGTGAAGGCTCTGATTCTCAACTACTATGTGATCGAGGTGAGATCCGTATTCAGCGTGCCAACTATGGTCGTCGTCAACACGATGTGTGTTCCATTGGGCGCCCACATAAACAACTCAAAAACACCAACTGCCTCAGCCAATCCACGACCAGCATAATGGCAGAAAGGTGTGATGGAAAGCGCCAGTGTATCGTCAAGGTATCCAACTCTGTGTTCGGTGACCCCTGTGTCGGAACCTATAAGTGCTTGGATGTGGCTTACACCTGTGACTGAATGATATCTTCCTGGTGAACGTGAAGATGTACAAGGCTTCTGGAATGTCTTCATCAGGTCGTGCTGTTTTCCTCCAACCTCTAAATCAACTTCAATGACCATTGTAAACCTATGTATATTGTGCTGAAGCTGTTCTTAAACAATTTCTGAATTGTGGTTGTTGTCTGACTTAAACGAAGCGGCAGGAAGACGATACTAGTTGCCTCTTGTACATCAATAAATGTCACCAATATTACTGAA
>XR_005052683.1
CACATAACATAAATACCAGGTGTATTGGAGCTTGTTATCATCAGTTGCTTTTTCTCTGTTAGTACCACTCCTGTACCTGGCATCATGTGCATTTTGAGACTGACGGTGGTCACATTGCTGGCTACAGCTTGCTGCACACTAACAGATggagCAATCAGCATCACGTGTGAAGGCTCTGATGCTTTACTGCAATGTGATGGAGGTAAGATCCATATCAAGCGTGCGAACTACGGTCGTCGTCAACACGATGTGTGTTCTATTGGGCGCCCTGATCACCAACTCACCGACACCAACTGCCTCAGCCAATCCTCCACCAGCAAGATGGCAGAAAGATGCGGTGGGAAGAGCGAGTGTATTGTCCCTGCATCCAATTTCGTTTTTGGAGACCCCTGTGTCGGGACTTATAAGTACCTGGACACCAAATACTCCTGTGTCCAACAGCAAGAAACAATAAGCAGCATCATATGTGAAGGCTCTGATTCTCAACTACTATGTGATCGAGGTGAGATCCGTATTCAGCGTGCCAACTATGGTCGTCGTCAACACGATGTGTGTTCCATTGGGCGCCCACATAAACAACTCAAAAACACCAACTGCCTCAGCCAATCCACGACCAGCATAATGGCAGAAAGGTGTGATGGAAAGCGCCAGTGTATCGTCAAGGTATCCAACTCTGTGTTCGGTGACCCCTGTGTCGGAACCTATAAGTGCTTGGATGTGGCTTACACCTGTGACTGAATGATATCTTCCTGGTGAACGTGAAGATGTACAAGGCTTCTGGAATGTCTTCATCAGGTCGTGCTGTTTTCCTCCAACCTCTAAATCAACTTCAATGACCATTGTAAACAATTTCTGAATTGTGGTTGTTGTCTGACTTAAACGAAGCGGCAGGAAGACGATACTAGTTGCCTCTTGTACATCAATAAATGTCACCAATATTACTGAA
>XM_036984243.1
TTTTTCTCTGTTAGTACCACTCCTGTACCTGGCATCATGTGCATTTTGAGACTGACGGTGGTCACATCAATCAGCATCACGTGTGAAGGCTCTGATGCTTTACTGCAATGTGATGGAGGTAAGATCCATATCAAGCGTGCGAACTACGGTCGTCGTCAACACGATGTGTGTTCTATTGGGCGCCCTGATCACCAACTCACCGACACCAACTGCCTCAGCCAATCCTCCACCAGCAAGATGGCAGAAAGATGCGGTGGGAAGAGCGAGTGTATTGTCCCTGCATCCAATTTCGTTTTTGGAGACCCCTGTGTCGGGACTTATAAGTACCTGGACACCAAATACTCCTGTGTCCAACAGCAAGAAACAATAAGCAGCATCATATGTGAAGGCTCTGATTCTCAACTACTATGTGATCGAGGTGAGATCCGTATTCAGCGTGCCAACTATGGTCGTCGTCAACACGATGTGTGTTCCATTGGGCGCCCACATAAACAACTCAAAAACACCAACTGCCTCAGCCAATCCACGACCAGCATAATGGCAGAAAGGTGTGATGGAAAGCGCCAGTGTATCGTCAAGGTATCCAACTCTGTGTTCGGTGACCCCTGTGTCGGAACCTATAAGTGCTTGGATGTGGCTTACACCTGTGACTGAATGATATCTTCCTGGTGAACGTGAAGATGTACAAGGCTTCTGGAATGTCTTCATCAGGTCGTGCTGTTTTCCTCCAACCTCTAAATCAACTTCAATGACCATTGTAAACCTATGTATATTGTGCTGAAGCTGTTCTTAAACAATTTCTGAATTGTGGTTGTTGTCTGACTTAAACGAAGCGGCAGGAAGACGATACTAGTTGCCTCTTGTACATCAATAAATGTCACCAATATTACTGAA

Function

NR:

description
L-rhamnose-binding lectin CSL3-like isoform X2

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984242.1 False 978 mRNA 0.46 9 83878342 83881586
XR_005052683.1 False 946 mRNA 0.46 10 83878342 83881586
XM_036984243.1 True 894 mRNA 0.46 8 83878390 83881586

Neighbor

gene id symbol gene type direction distance location
LOC118965393 NA coding upstream 75742 83800611 ~ 83802600 (+)
nicn1 nicn1 coding upstream 95877 83759738 ~ 83782465 (+)
LOC110529053 LOC106583755 coding upstream 166139 83711361 ~ 83712203 (+)
dag1 dag1 coding upstream 262299 83554283 ~ 83616043 (+)
LOC118965370 NA coding upstream 567970 83265536 ~ 83310372 (+)
LOC118965371 NA coding downstream 490611 84372197 ~ 84401519 (+)
amigo3 amigo3 coding downstream 1023042 84904628 ~ 84909361 (+)
LOC110528638 NA coding downstream 1412642 85294228 ~ 85297684 (+)
LOC110528636 LOC106583767 coding downstream 1419968 85301554 ~ 85363683 (+)
pusl1 pusl1 coding downstream 1670207 85551793 ~ 85617931 (+)
G656811 NA non-coding upstream 82621 83795363 ~ 83795721 (+)
G656810 NA non-coding upstream 83307 83794599 ~ 83795035 (+)
G656808 NA non-coding upstream 87899 83790152 ~ 83790443 (+)
G656760 NA non-coding upstream 137973 83740155 ~ 83740369 (+)
G656583 NA non-coding upstream 256154 83620859 ~ 83622188 (+)
G656871 NA non-coding downstream 7586 83889172 ~ 83889915 (+)
G656878 NA non-coding downstream 14577 83896163 ~ 83908491 (+)
G656902 NA non-coding downstream 60640 83942226 ~ 83942499 (+)
G656904 NA non-coding downstream 66856 83948442 ~ 83948667 (+)
G656905 NA non-coding downstream 67255 83948841 ~ 83949073 (+)
G656551 NA other upstream 317824 83558837 ~ 83560518 (+)
G656264 NA other upstream 606133 83267148 ~ 83272209 (+)
G656125 NA other upstream 722023 83156014 ~ 83156319 (+)
G655042 NA other upstream 1418675 82459085 ~ 82459667 (+)
G654782 NA other upstream 1926950 81951002 ~ 81951392 (+)
G657228 NA other downstream 621963 84503549 ~ 84520418 (+)
G657254 NA other downstream 670410 84551996 ~ 84554773 (+)
G657292 NA other downstream 731243 84612829 ~ 84618717 (+)
G657481 NA other downstream 1124893 85006479 ~ 85007498 (+)
G658885 NA other downstream 2005006 85886592 ~ 85887121 (+)

Expression


Co-expression Network