LOC110528630 (stl3)


Basic Information

Item Value
gene id LOC110528630
gene name stl3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 83913871 ~ 83917114 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984245.1
TTCTCTGTTAGTACCACTCCTGTACCTGGCATCATGTGCATTTTGAGACTGACGGTGGTCACATCAATCAGCATCACATGTGAAGGCTCTGATGCTTTACTGCAATGTGATGGAGGTAAGATCCATATCAAGCGTGCAAACTACGGTCGTCGTCAACACGATGTGTGTTCTATTGGGCGCCCTGATAACCAACTCACCGACACCAACTGCCTCAGCCAATCCTCCACCAGCAAGATGGCAGAAAGATGCGGTGGGAAGAGCGAGTGTATTGTCCCTGCATCCAATTTTGTTTTTGGAGACCCCTGTGTCGGGACTTATAAGTACCTGGACACCAAATACTCCTGTGTCCAACAGCAAGAAACAATAAGCAGCATCATATGTGAAGGCTCTGATTCTCAACTACTATGTGATCGAGGTGAGATCCGTATTCAGCGTGCCAACTATGGTCGTCGTCAACACGATGTGTGTTCCATTGGGCGCCCACATAAACAACTCAAAAACACCAACTGCCTCAGGCAATCCACCACCAGCATAATGGCAGAAAGGTGTGATGGAAAGCGCCAGTGTATCGTCAAGGTATCCAACTCTGTGTTCGGTGACCCCTGTGTCGGAACCTATAAGTACTTGGATGTGGCTTACACCTGTGACTGAATGATATCTTCCTGGGGAGCCTGAAGATGTACAAGGCTTCAGGGATATCTTCATCAGGTTGTGCTGTTTTCCTCCAACCTCCAAATCAACTTCAATGACCATTGTAAACCTGTGTAGATTGTTTAAGAAATGCTTCAACACCATTTCTGAACTGTGGTTGTTGGTCTGAATTAAATGAAGCGGCAGGAAGACGATACTAGTTGCCTCTTGTACATTAATAAATGTCACACCAATATTACTGAA
>XM_036984244.1
CCAGGTGTATTGGCGCTTGTTATCATCAGTTGCTTTTTCTCTGTTAGTACCACTCCTGTACCTGGCATCATGTGCATTTTGAGACTGACGGTGGTCACATTGCTGGCTACAGCTTGCTGCACACTAACAGATggagCAATCAGCATCACATGTGAAGGCTCTGATGCTTTACTGCAATGTGATGGAGGTAAGATCCATATCAAGCGTGCAAACTACGGTCGTCGTCAACACGATGTGTGTTCTATTGGGCGCCCTGATAACCAACTCACCGACACCAACTGCCTCAGCCAATCCTCCACCAGCAAGATGGCAGAAAGATGCGGTGGGAAGAGCGAGTGTATTGTCCCTGCATCCAATTTTGTTTTTGGAGACCCCTGTGTCGGGACTTATAAGTACCTGGACACCAAATACTCCTGTGTCCAACAGCAAGAAACAATAAGCAGCATCATATGTGAAGGCTCTGATTCTCAACTACTATGTGATCGAGGTGAGATCCGTATTCAGCGTGCCAACTATGGTCGTCGTCAACACGATGTGTGTTCCATTGGGCGCCCACATAAACAACTCAAAAACACCAACTGCCTCAGGCAATCCACCACCAGCATAATGGCAGAAAGGTGTGATGGAAAGCGCCAGTGTATCGTCAAGGTATCCAACTCTGTGTTCGGTGACCCCTGTGTCGGAACCTATAAGTACTTGGATGTGGCTTACACCTGTGACTGAATGATATCTTCCTGGGGAGCCTGAAGATGTACAAGGCTTCAGGGATATCTTCATCAGGTTGTGCTGTTTTCCTCCAACCTCCAAATCAACTTCAATGACCATTGTAAACCTGTGTAGATTGTTTAAGAAATGCTTCAACACCATTTCTGAACTGTGGTTGTTGGTCTGAATTAAATGAAGCGGCAGGAAGACGATACTAGTTGCCTCTTGTACATTAATAAATGTCACACCAATATTACTGAA

Function

NR:

description
L-rhamnose-binding lectin CSL3

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984245.1 False 894 mRNA 0.46 8 83913871 83917078
XM_036984244.1 True 966 mRNA 0.46 9 83913871 83917114

Neighbor

gene id symbol gene type direction distance location
stl3 stl3 coding downstream 8605 83888444 ~ 83905266 (-)
LOC110528625 LOC106583755 coding downstream 178374 83731185 ~ 83735497 (-)
LOC118965325 NA coding downstream 353453 83559538 ~ 83560418 (-)
LOC118965369 NA coding downstream 857439 83056001 ~ 83056432 (-)
LOC110525201 LOC106583753 coding downstream 874898 82872709 ~ 83038973 (-)
LOC110528632 LOC105007334 coding upstream 37081 83954195 ~ 84332909 (-)
LOC110529055 rnf123 coding upstream 927217 84844331 ~ 85106696 (-)
LOC110528641 terf2ip coding upstream 1189857 85106971 ~ 85119900 (-)
LOC110528639 LOC106583772 coding upstream 1224110 85141224 ~ 85169972 (-)
gmppb gmppb coding upstream 1254004 85171118 ~ 85184654 (-)
G657662 NA non-coding downstream 111127 83800228 ~ 83802744 (-)
G656809 NA non-coding downstream 119581 83794057 ~ 83794290 (-)
G656807 NA non-coding downstream 124617 83788986 ~ 83789254 (-)
G656806 NA non-coding downstream 125671 83786931 ~ 83788200 (-)
G656802 NA non-coding downstream 130041 83783559 ~ 83783830 (-)
G657751 NA non-coding upstream 26231 83943345 ~ 83943545 (-)
G657727 NA non-coding upstream 34281 83951395 ~ 83952082 (-)
G657812 NA non-coding upstream 139156 84056270 ~ 84063224 (-)
G657879 NA non-coding upstream 250288 84167402 ~ 84171387 (-)
G657895 NA non-coding upstream 283471 84200585 ~ 84201832 (-)
G656671 dag1 other downstream 297873 83608532 ~ 83615998 (-)
G656314 NA other downstream 585691 83327479 ~ 83328180 (-)
G655715 LOC106583745 other downstream 1580573 82328398 ~ 82333651 (-)
G655651 NA other downstream 1687326 82225952 ~ 82226545 (-)
G655469 NA other downstream 1998361 81914708 ~ 81915510 (-)
G658255 NA other upstream 1089612 85006726 ~ 85007505 (-)
G659250 NA other upstream 2243128 86160242 ~ 86160923 (-)
G659543 NA other upstream 2715293 86632407 ~ 86633856 (-)
G659824 NA other upstream 3086622 87003736 ~ 87007292 (-)

Expression


Co-expression Network