amigo3 (amigo3)


Basic Information

Item Value
gene id amigo3
gene name amigo3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 84904628 ~ 84909361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610778.2
ctgaaGCGTTTATCAAAAGGCAGGGAGGAttaaatatgagagagagagagcgcgagagagagagagagctgcattgTGTGGAGCCTTGGGAAAAGACCAGAAGCTCCTATAGTCCCTCCACTCAACACAGagcagccacacagagagagtcacaACCCTCcctcacacttctctctctctctggataccATAGGAACCCGTCTTACAGCTGATTTCCCCCTGGATACTACAGCCAACCGGAGCAGAGGAAAATCCTGGATACTACAGCCAACCGGAGCAGAGGAAAACACTAGATACTAGATACCctaacttttattttatttggaaTCCGGTGTGTTCCATGAAGCCCTGATGATGAACTTGATTGTAAATAAGGTGCATCGCATCGCAGCCACCGAGAACACAGCTTGTCTTTACTAAGACCCCTGTGTGTGATCAGAGAAGACGACGTGAAGGGGAAAGATTCTGGAGGTTTTGGTCGGAGCAGTACACATCTTCTTTTTCTATACAATACTCCTGGGGAGAGCACTCATCATCCGCCAgttgaagggagagggggagattgtatcgaccgagagagagagagagagagagagagagagagaactggctGTATGATTGCGTTAAGCGAGCTAGACAGAATGTTGACTTATTTCAAACCCCTCCCTTGCTCACTCGCTGCTCGCACTGTCTGTCGCAGACAGCTTGTTTAGTGACCTATAACTCTTATGGCTGGACGAAAAGGACATTTACATTACAACTGTGAGAAAAAGGTGTTTTGGTCCGTCACAAGAGGCAGTGGGACTACGGATTCCCCACAAAACGGGGTTTTGTTTTTCTGGGTAGGCTAAGATTAACAGTATCGGACAATTGGTGATTCTTTAAAGCACCTCCTTTAGCTCACAAGGACCGGAGACAGCAAGAGAAAAGTACACCGGTCCATCAAGAGAAAAGTACACCGGTCCATCTCCGTGGACAAAACGGACAATAAAGCCACTCTTGTTCTAAACATGGTTTGTTCTTCTTCAGGACATGACAGAGAGAAAAGCTCCAACAGGACTCAGCTTCTCCACGTGTTATAATTAAACCTCCGGACCAGCGCCCAGTTTTATAATGGGCTACTCTGATGAGTCCTGCCGCAGCAACAGTTCCCAGGACTAACCCATGTGATAAGACATTTTAATGGACTTTCAAGGAGGTGAGGAGCGTAATCACTAAAAGCTGTGATGCAGAAATAGAGCAAATCCCAGAGTGAAATGTGCTTTTTCTTTTTGTCAGGGATTCTTGTATTCCCTTCGTCTCTCAGTCACATGAAATGAACTTTTCTTGGGTTTCCCCAACCTGGGCAGGGACAGTGACTTTTACAGCTATTGAACTAGCTAAACTGCCTTCCATTTGCTAATTCTTCTCTCCTCCCGTCTTGTCTACTGCCCTGCAGTGGAGGGGCAGGCCGCTATGGCAGCTTTCACTCTCTCTGCTGCTACGTTACAGCTGTAGCTCGTATATCCCCCAAACCGCCACCACTCCAAGATCCCGTTGAGACCGAGAGTACACCAACCTCCAACTCCGCTCctgttgagagacagagagggagacaaagagagaaagactgtGCACCTACCAAACTTTTATTGAGGAAGAAAGACTGTGGATCAACCAAAACAAAGAGACTGTGCACCAACCAGGAGCCTCACGGACAGACATAAAAATTCCTGGTGTCACTCTCTCGTCCCCTTGTCGTGTCCCGTCAGCACAATGCTCAGGTCTCAGGCTGTAACTACCCCTCTGGTGCTGAACTCTCTCCTCCTAGTGCTCCTGCTGCAGCAAGCCGGGGTCAGGGCTGAGACAGGGGTCGCGGCTGAGCCCGGGGTAGGGGCAAGTGAGTCTGGGGTCGGGGCCAGTAGATGTCCCAAGGGCTGCCTGTGTTGCTCCGACATCCTCAGCTGCGTCGACAAGGGTCTGAAGGCACTGCCCTCCGAGCTGCCCGCGTACACCACCACCCTGGACCTCAATCACAACCGCCTGAAGGAGCTGAAGAAGGGGAGCTTTACTGCGCTGCCCCGTCTGGAGTCTCTCCGCCTGGCTCACAACTCTCTGAAATGGCTCGAGCCCGGAACCTTCTGGAACAGCAGCGCGCTACGACAACTGGACCTGTCGTCCAATCAGCTGGAAAAGGTAGAGGTGCACTACTTCCTGGAGCTGACAGGATTGGAGGAGCTGCTGCTCTTCAACAACCGCATCGTCCGCGTGGAGAGCAAGGCCCTGGAGGCGCTCGGTAACCTACGCAAGGTCTACATCAGCCACAACCGCCTCACGGACTTCCCCTTCTCCATCCAGGAGGACAGCCACCCCTTCCTAGCCACCATGGACCTGTCCTCCAACAGCATGTCCAAACTCCCCCTGGTGGACATCGAGACCCTGCCGGCGGCCTTGCAGAGCGGACTCTTCCTCCACAACAACACCCTGATCTGCGAATGCGAAATGTACAATATGTTCCGGCGCTGGGAGCAGAAGGGGTTCCCCTCGGTCAGTGACTTCCGGGAGGAGCACACCTGCCTGGTGTATGGGGAACACAAGGCCTCCGTTAAATTTTTCCACCACAGACGATTCTTTGAAGTGAACTTGAAGTGCAGCACGGCAGTGGCTGGAGCTCTATGGGAGCCTGAGGGAAGCCTGCTGGTGTACGAAGGAGCCGCCGTGGTTCTGGACTGTCACACCATGCTCGAAGGACAGCACCTAACCTACTTGTGGGTTTCGCCTCACCACGGGGCAGGTGCCCCGCCGGAGAACAACGGCACTCTCCGCATGCACGCCAACGGCAGTCTGGAGATTGTGTCGGCGCAGGTCGAGGACTCCGGCGTGTACTGGTGCAAGGTTTTCGACGGGACTAAGAGGAACGAGTCATGGGAAGTGAACGTGACGGTGTTGATGCGACACGACGAAACTGAGCCCTTCAACACGGGGTTTACGACCCTCATAGGGTGCGTGACGACCCTCGTTCTGGTCCTCATGTACCTTTACCTGACCCCCTGCCACTGCTGGTGCCACAAGCAGCCCCCTCTGCCGGGTACCCCCAGCCCGGCCAATGACCAGTGCAGTGCCCAGTCCTCAATCCTGACCCCCACCCCGCCCGCCACCACAGAGGGTCCAGGCCGTAAGGTCAGTAACAACAAGCATGTGGTGTTTCTGGAACCCATCAAAGAAGTGCAGAACGGCCGGCTAAGGGCGGCTACAGGTGCGCTGTCCCCAGTCTCGGTTTCAGGCCACTCCATCACCTCAGTCTTCTCAGACTCACCCATCGTGCCATAGCACCAGGCAGACAAGCCATCTCCTACTGTACCTTCCCTCTACCCAACACCTGCCTCCTCTgtcccaccccaccccactagCAGAGAGAGTGGGTTGGGTTACCCACCAGGCAGGGCAGAGAGTTAGACACTGCCTGTCAAGAGTaggatagatagatggcattgccACCCAGGGGTGAGGCAGAAGACACCAcgagagggagattgagagacagaaatagagagaggaagagctaggcagggagatggagaggaacagataGGCAGGGAGATGGAGAGCAAGACAGCGAAAGAGCAGAGAAATTAACATCCAGCACAAACTCATCTGGCCCAGGCTAGGTTTGACTGGATTGCCTTTCTGAGGAGTGGAACTGCAAGGATCCTGCATGTTGAGTAAGAAACAGTGCTTCTGGACTAGGGCTGCAACATTCTTTTAACTTTCTCAAAACATTCCCCCGATTTCCCAGAAATCCTGGTTATGAGGAAATAAGCAGAAATCCGTGAATTCTTGAAACCAGGAGTTCCGGAAAACCAGGGAACTTTGAGAAAGTTAACAGAGTTTTGCAACACAATACCGGGTGTCTATCTAGAACTATATCAAAACAAAGCAGGATAGAGCTGTCCCTGTTAGCACGGCTTCAAACCTTTAATAAAACCAGAGCTAGTGTATGAATGCCTTGTCTAAGAAAATTTGAACAAAAATCAGCCATAAGTGTACAGCTTGAAACCTTTTTATAGCAAGTAGCCTAAAGATAGCAAGTTAGATGACTAGCAGAAGCATATTTACAAAGTATACCTTTAAGCAGAATGAATGTGACCTTTAGTAGAATAGAGAAACAACAATGTTAAGGCTTTtatcttttttttatatatatatatatgaaactaGCAGTAGAGAAATGTGATTTGAAACCCCACTGTAAAGTCCTGGTGGATTCCTACCTTCGCTTAGCTGTCGGATAACAAACAAAGAAAGGAAGAAACAGGAACACAGTGTGTGTGCAGAACAGTTCAGCAGAAAGAGACAGTTTTTGTTTCGTGGCAAAATAGATGCATCCATTTATTTCTTAGTTATTAAGAGACTGGGCCGTGGTTTCACTGTGAGGACAGAGGGGGCTGTTTCTGCTCTTAACACCTTTCTTACTGATGCTTTTTCATCCGCTACTGACACCGACGGATACAGAATATTGAGCGACAAAGTGACAAGAGAGCTGATGTTACCTGTTATGGTACGTTTGTTCCTGGATTGACAGGAGGACACTCCAACAGCTCGCTGTTTTCCTAATGGATTTATGTTCCTCTTCAGTCAACACGtacccccaccctcctcctccctcccccacgTACCCCAACCTTACCCTTCCCACGtaccccaccctcctcctcccccaaccCTCACCAGGTACCCTAGCCGCCTCCTCCACCT

Function

symbol description
amigo3 Predicted to be involved in brain development. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human AMIGO3 (adhesion molecule with Ig like domain 3).

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K22529 AMIGO; amphoterin-induced protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610778.2 True 4734 mRNA 0.51 1 84904628 84909361

Neighbor

gene id symbol gene type direction distance location
LOC118965371 NA coding upstream 503109 84372197 ~ 84401519 (+)
LOC110528627 stl3 coding upstream 1023042 83878342 ~ 83881586 (+)
LOC118965393 NA coding upstream 1102028 83800611 ~ 83802600 (+)
nicn1 nicn1 coding upstream 1122163 83759738 ~ 83782465 (+)
LOC110529053 LOC106583755 coding upstream 1192425 83711361 ~ 83712203 (+)
LOC110528638 NA coding downstream 384867 85294228 ~ 85297684 (+)
LOC110528636 LOC106583767 coding downstream 392193 85301554 ~ 85363683 (+)
pusl1 pusl1 coding downstream 642432 85551793 ~ 85617931 (+)
tamm41 tamm41 coding downstream 721617 85630978 ~ 85648641 (+)
vgll4b vgll4 coding downstream 740484 85649845 ~ 85744794 (+)
G657414 NA non-coding upstream 34854 84867754 ~ 84869774 (+)
G657399 NA non-coding upstream 59530 84841334 ~ 84845098 (+)
G657391 NA non-coding upstream 91537 84812683 ~ 84813091 (+)
G657370 NA non-coding upstream 145939 84758140 ~ 84758689 (+)
G657308 NA non-coding upstream 246367 84657739 ~ 84658261 (+)
G657430 NA non-coding downstream 1618 84910979 ~ 84912324 (+)
G657451 NA non-coding downstream 43400 84952761 ~ 84953257 (+)
G657472 NA non-coding downstream 76675 84986036 ~ 84987310 (+)
G657477 NA non-coding downstream 87846 84997207 ~ 84998288 (+)
G657489 NA non-coding downstream 111707 85021068 ~ 85021612 (+)
G657292 NA other upstream 285911 84612829 ~ 84618717 (+)
G657254 NA other upstream 349855 84551996 ~ 84554773 (+)
G657228 NA other upstream 384210 84503549 ~ 84520418 (+)
G656551 NA other upstream 1344110 83558837 ~ 83560518 (+)
G656264 NA other upstream 1632419 83267148 ~ 83272209 (+)
G657481 NA other downstream 97118 85006479 ~ 85007498 (+)
G658885 NA other downstream 977231 85886592 ~ 85887121 (+)
G658887 NA other downstream 986465 85895826 ~ 85896149 (+)
G659058 NA other downstream 1499341 86408702 ~ 86412974 (+)
G659136 NA other downstream 1611699 86521060 ~ 86521822 (+)

Expression


Co-expression Network