LOC110528638


Basic Information

Item Value
gene id LOC110528638
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85294228 ~ 85297684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474287.2
CTtttattctctctcacacacattcacgGATAAAGTTTAGGCATCGAATAGTTGGTTCCTGGGCTGTAAACCTCCCAACTTCCTGATCCATGCTCCAAaggacagatctaggatcagctcaccCTCGTCAAATCCAAACCAGGACCTTAATAATCCACAAAGGGGAAAACGGACCTGAGACCAGCATTTAAACCCCACGTCTTCCTGTCCAGACACTGCTCTCCATCCAGAGTTCCTCCTGTGCTCCAGCTGTCCATCCGtctatccatccattcatccctccacaCCCCAGCCAACCAGCCATGGGTCTGATGAGTGAAGACATGAATTGTTGCGTCTGCTTCCAACCCTACTCTCGCAGGGAGAAAATCCCTCGGGTGCTCCACTGTGAACACACCTTCTGTGGGCCGTGCTTGGAGACAATCTCCAGGCTCCAGAGTGGCCTCCTGACCGCGTGCTGCCCTCTGTGTCGCTGGATCACCTGTAGCCAGGTCAGCCTACCCTTTGCTGGTTCTCTGGTTGTCAACACTGAGATCTGGGACCagatagcagacagacaggaggaagaggaggagatggaggcgtGGATAGGaaataacagacagacacagacctcCACACAGTACAAATGCTCTTCATTGGGGCATTCTGGTGTGAGGATCAAGCTACAGAGTTTCTGGAGGAGAATGAGGCACAGTGGTCAGAGAGCACTAAAAGAAGGGAAGAAATGAAGGTCTTGGTTGTGTTTTGATAGATGATGTCACCGTAGTAGTCTAGGACAGGAAGCAGCAGTTGGGATACCAAGGTCTTTCTTTTTCAGTATTTATTTGTTATATTTTATACAATATACGGTCTACAATCTTTATAATCAAAACAAATATGTCACCTTTATTTCAACATGTAGTTTTTTTGAGACCTAGTTTCTCTTTTTCAAATGAACCCTGTAATATGATTGTCCCTATATGTCTGAAGTGCATATTTTTTGTACTCAAGTGATATTTATTGCTATGATTGTAAAATAAATTAATCTGCTTTAAAATAACTGTCTTCTAGTTGTGAAATCACGCTGGTGCaatcaattctctctctctccctctccctctggttTGAGGAACTATTATTGTAGTAACAGCAAAATAAGCTAATGTTATTGTACCCGTAAGTGTGTTGTAATTCGCAACAATATCATAGAATTACGTTACATTCGCTGCCATGTCATTGTTATGCCACTGGGGTTAGAAAGCTTGTATCCATGGTGCGACAGCTCTTAGTGTAATTACGGTATAGGTGCGACAGCTCTCACTGTTATAACGGTATAGAGAATTCAGAGTTAAGGGTTTATAAAGGACGTCGTTTGttcggtaaaaaaaaaaaaaaaacagtcaggAACCTTCTGCGATAATTGTGCACATTTTCATAATTTTCGCCCTAATTGTTAATTTACAAAGTATACGGGACTGGACTTTTATTCTGAAGGATTACATAAATCCGTGACCCCGGACCGGAGATGCAGGAAAAACAGCTGATTCTTGAGAAGTGAAACTGAAAGGGGGAAACCTAAAGGTGATGACAGACGGTTGGTCCACAGACAGAACAATGtgccagatatttcaccggatgaaTAAATGTGAAACATCTGATTGGCGTTTCCTCTCACTGTTTCCAAAATCAGAATCTCTCTCTAGTTTAAACAGActgatttttatggggatttttttcaTAATGCCAATTAGATTTCCAACTGCGCGCGGACATCGACTTCAGTTAAAACCACTACAATGACAAGGCACGTTCTCAGATAGGGGTCTAGAAGTGCTACCCTCCTCCAGTGAAAATACCCCTACAAAATAAGATTGATCTATTTTAGATATCGGTGACCAAAAACTGGACATGTGTGTCGTTTTTAGACATGAATACCTGTTCCCTAAATGTCTCTGCAAGGGCCTGACAAAGAGGATTCCATCAAAGCATTTCCTGGAAGAAATAAAACATGGCGTGAATTCTCCACAAGTGTTGACAATTCTGTGTTTTTGGACTTCCATGGAACTAACCTGCGTCACCTGAGAGCGGAGGAGGTGAGAGACCGCCCCTTAtgaaacaagaaaaaaaaaaaaagtatctttattttactaggcaagtcagttaagaacaaattcttattttcaatgacggcctgggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtttgaacttgcaaccttccggttactagtctaacactctaaccactaggctaccctcacCTTCGCAGTGGCTTAAAAGCACAGGTAGACAATGTTGcaagggttcccaaacttttttgcCCTACGACCCCAAATTCTTGTGACCTCAACCATGTGAAAAAATGTGGTAATTAAATGCACTCAAAtaataattaaattaaattaaatgcaCTAAAATGCACTCATTCTAGCAGgatttctgattgtcttctcaactcaaatcaaatcctatgtgtcacatgcgccaaatacaacaggtgtagtagaccttccgttgaaatgcttacttacaagccccttaacaaacaatgtagttcaagaaatagagttaagaaaatatttactaaataaactaaatgtGGGGCTTTGGCAGTCAATTGTAAAACATTctaactgtatttctgatttgtCTTCTCAACTCACCATCACATACTGTTCATGTGGGGCTGTGACAGTCAATTGAAAATGAGTCTGACACAATGTGTCTTATCTCACCATCTCGTtttcatgatggggtattgtgatgtcatgatggggtattgtgatgtcatgatggggtattgtgatgttattatggggtattgtgatgtcattatgggttattgtgtg

Function

NR:

description
PREDICTED: RING finger protein 208-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474287.2 True 2876 mRNA 0.42 3 85294228 85297684

Neighbor

gene id symbol gene type direction distance location
amigo3 amigo3 coding upstream 384867 84904628 ~ 84909361 (+)
LOC118965371 NA coding upstream 892709 84372197 ~ 84401519 (+)
LOC110528627 stl3 coding upstream 1412642 83878342 ~ 83881586 (+)
LOC118965393 NA coding upstream 1491628 83800611 ~ 83802600 (+)
nicn1 nicn1 coding upstream 1511763 83759738 ~ 83782465 (+)
LOC110528636 LOC106583767 coding downstream 3870 85301554 ~ 85363683 (+)
pusl1 pusl1 coding downstream 254109 85551793 ~ 85617931 (+)
tamm41 tamm41 coding downstream 333294 85630978 ~ 85648641 (+)
vgll4b vgll4 coding downstream 352161 85649845 ~ 85744794 (+)
LOC110528658 slc6a1 coding downstream 720391 86018075 ~ 86033561 (+)
G658362 NA non-coding upstream 5575 85288451 ~ 85288653 (+)
G658360 NA non-coding upstream 8348 85285111 ~ 85285880 (+)
G658359 NA non-coding upstream 9223 85284500 ~ 85285005 (+)
G657643 NA non-coding upstream 36554 85256990 ~ 85257674 (+)
G657623 NA non-coding upstream 74787 85219043 ~ 85219441 (+)
G658365 NA non-coding downstream 2234 85299918 ~ 85300437 (+)
G658369 NA non-coding downstream 5724 85303408 ~ 85305131 (+)
G658370 NA non-coding downstream 12637 85310321 ~ 85352511 (+)
G658392 NA non-coding downstream 69343 85367027 ~ 85372293 (+)
G658386 NA non-coding downstream 77917 85375601 ~ 85378510 (+)
G657481 NA other upstream 286730 85006479 ~ 85007498 (+)
G657292 NA other upstream 675511 84612829 ~ 84618717 (+)
G657254 NA other upstream 739455 84551996 ~ 84554773 (+)
G657228 NA other upstream 773810 84503549 ~ 84520418 (+)
G656551 NA other upstream 1733710 83558837 ~ 83560518 (+)
G658885 NA other downstream 588908 85886592 ~ 85887121 (+)
G658887 NA other downstream 598142 85895826 ~ 85896149 (+)
G659058 NA other downstream 1111018 86408702 ~ 86412974 (+)
G659136 NA other downstream 1223376 86521060 ~ 86521822 (+)
G659706 NA other downstream 1802780 87100464 ~ 87102270 (+)

Expression

LOC110528638 Expression in all Baseline Samples

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LOC110528638 Expression in each Bioproject

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LOC110528638 Expression in each Sample
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Co-expression Network