pusl1 (pusl1)


Basic Information

Item Value
gene id pusl1
gene name pusl1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85551793 ~ 85617931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984264.1
ACTTTAGCATGTCGCATGGTTTCCACAGCCACGCAGTGGCTACATCGTAAATATTCATgagttgttttgttttgttttttggtaTTCATTTAaagttaggtttaaggttagcagcgtggaaaatgtaaggaggaaggttagggctaggtttaAACTCACATTTGAAGAAGATCAATTGTAGAAACAGGCGGTTTTTTgtggactttgtggctgtggtaactagtagTGACCATGTCGCGTTGCGTGTGAAGTTGAAGGTGTACAATGGGGATTTTTCTGTGGAATTATCAAACATAACCTCTGTCAAATCTCTCTTTGTTAAAATAGAAAACGGCAACAAGCAGAGGTTCAGGTTGGGGCACATTTTGCCCAATATAGCCTTTGAGTTGCAAAACAGGAGTTTGTCTTTGAAGCAGTGGTCAATGATCATGCACAATGGCCGTGTCCGTTATCTCATCTTCTTCCAATACCTCGGGACAAAGTACAGTGGCGTTATGAAGGCGCCTCCACACCAAGCAGTCAAGGGTGTCCAGAACTACTTGGAGgatGCGGTACGGAGTTTGAGGCCAGTGAATGAGGTTTCTCTGTCCATCTCcagTCGGACAGACACCGGTGTCCACGCCCTTGGAAACTCCGCCCACTTCGACCTCCAGCGGCAGAACGGCAAGCCCCCATTTGCTGAGGAGGTCCTGGTTGACGCCCTCAACTTCCACCTGAGACCAGAGCCAATCAGAATCACCCGTGCCTACCGGGTCCCCGGTGGGTTCCATGCCCGTTTCCGCGCTGTGTCTCGGACGTATGTCTACCGGCTAGCCACGGGCGTCACTCATCACTCCTGCATGCCACTGACCGATGCTAACCTCTGCTGGGGGTTACGCCACATTGACTTGGATGTTGGTGCGATGCGCGACGCTGCCTCCCTGCTGGTGGGGACCCATAACTTCAGCTCCTTCAGAGCCCTGAACTCTGAGACACCATTTAAAGACCCGGTAAAGACCCTGGAGAAGGTCGGTCTGGAACTCGGAGACGCCTTTGTACACAAACACTTCCACagAGATATTCAGTTCTGGGAGCTCACCTTTAAGAGCAGATCCTTCCTCTACAAACAGgtgcgTAGGATGACAGGGGCTCTGGTGGCAGTTGGCCAGGGACAGATGTCTGTCTCTGGGGTGAAGGAATTACTGGAGGCCCAGGACTCTCAGGCCTACCCACACAACCTCACATCACCCCCAGAAGGACTCTTCCTCACCAGGGTGGAGTACCACCGGTCAGACGACCTCCTCAGATAAGCTGTGAGGAATTGAGAAAACAATTACGGAGGAAGCAAGGCCATTGATGGCAAGTAAAATGTTCAGATACAGTTCACACAATATACCGTGGGGCAATGAcaattgcaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtagcttgTTTTCTATTTGACATTTCTAGAGAAATTATTTTAGGGCACCAT
>XM_036984263.1
ACTTTAGCATGTCGCATGGTTTCCACAGCCACGCAGTGGCTACATCGTAAATATTCATgagttgttttgttttgttttttggtaTTCATTTAaagttaggtttaaggttagcagcgtggaaaatgtaaggaggaaggttagggctaggtttaAACTCACATTTGAAGAAGATCAATTGTAGAAACAGGCGGTTTTTTgtggactttgtggctgtggtaactagtagTGACCATGTCGCGTTGCGTGTGAAGTTGAAGGTGTACAATGGGGATTTTTCTGTGGAATTATCAAACATAACCTCTGTCAAATCTCTCTTTGTTAAAATAGAAAACGGCAACAAGCAGAGGTTCAGGTTGGGGCACATTTTGCCCAATATAGCCTTTGAGTTGCAAAACAGGAGTTTGTCTTTGAAGCAGTGGTCAATGATCATGCACAATGGCCGTGTCCGTTATCTCATCTTCTTCCAATACCTCGGGACAAAGTACAGTGGCGTTATGAAGGCGCCTCCACACCAAGCAGTCAAGGGTGTCCAGAACTACTTGGAGgatGCGGTACGGAGTTTGAGGCCAGTGAATGAGGTTTCTCTGTCCATCTCcagTCGGACAGACACCGGTGTCCACGCCCTTGGAAACTCCGCCCACTTCGACCTCCAGCGGCAGAACGGCAAGCCCCCATTTGCTGAGGAGGTCCTGGTTGACGCCCTCAACTTCCACCTGAGACCAGAGCCAATCAGAATCACCCGTGCCTACCGGGTCCCCGGTGGGTTCCATGCCCGTTTCCGCGCTGTGTCTCGGACGTATGTCTACCGGCTAGCCACGGGCGTCACTCATCACTCCTGCATGCCACTGACCGATGCTAACCTCTGCTGGGGGTTACGCCACATTGACTTGGATGTTGGTGCGATGCGCGACGCTGCCTCCCTGCTGGTGGGGACCCATAACTTCAGCTCCTTCAGAGCCCTGAACTCTGAGACACCATTTAAAGACCCGGTAAAGACCCTGGAGAAGGTCGGTCTGGAACTCGGAGACGCCTTTGTACACAAACACTTCCACagAGATATTCAGTTCTGGGAGCTCACCTTTAAGAGCAGATCCTTCCTCTACAAACAGgtgcgTAGGATGACAGGGGCTCTGGTGGCAGTTGGCCAGGGACAGATGTCTGTCTCTGGGGTGAAGGAATTACTGGAGGCCCAGGACTCTCAGGCCTACCCACACAACCTCACATCACCCCCAGAAGGACTCTTCCTCACCAGGGTGGAGTACCACCGGTCAGACCTGCAGCTTTACACTCAGGAGGATTCACAGAGCTGATTGTCGTTTTAATGACCTAGGCCCAAtcccaaatggacccctagacgTTACGCCCTACGCatttgtggagatctgagaggatttgaaAAGCAATTTACTAATACCTCCAATTTGCCCCTCTGATAGGCTaggtcaggggtgtcaaactaattTCATGGAGGgtctagtgtctgcaggttttagtTTTCTAACACCTAGACACCCAGGTGAGGGGAGGTctttactgagacctagacaaccaggtgaggggagttccttactgagacctagacaaccaggtgaggggagttccttactgagacctagacaaccaggtgaggagagttccttactaagacctagaca
>XM_036984265.1
ACTTTAGCATGTCGCATGGTTTCCACAGCCACGCAGTGGCTACATCGTAAATATTCATgagttgttttgttttgttttttggtaTTCATTTAaagttaggtttaaggttagcagcgtggaaaatgtaaggaggaaggttagggctaggtttaAACTCACATTTGAAGAAGATCAATTGTAGAAACAGGCGGTTTTTTgtggactttgtggctgtggtaactagtagTGACCATGTCGCGTTGCGTGTGAAGTTGAAGGTGTACAATGGGGATTTTTCTGTGGAATTATCAAACATAACCTCTGTCAAATCTCTCTTTGTTAAAATAGAAAACGGCAACAAGCAGAGGTTCAGGTTGGGGCACATTTTGCCCAATATAGCCTTTGAGTTGCAAAACAGGAGTTTGTCTTTGAAGCAGTGGTCAATGATCATGCACAATGGCCGTGTCCGTTATCTCATCTTCTTCCAATACCTCGGGACAAAGTACAGTGGCGTTATGAAGGCGCCTCCACACCAAGCAGTCAAGGGTGTCCAGAACTACTTGGAGgatGCGGTACGGAGTTTGAGGCCAGTGAATGAGGTTTCTCTGTCCATCTCcagTCGGACAGACACCGGTGTCCACGCCCTTGGAAACTCCGCCCACTTCGACCTCCAGCGGCAGAACGGCAAGCCCCCATTTGCTGAGGAGGTCCTGGTTGACGCCCTCAACTTCCACCTGAGACCAGAGCCAATCAGTGACTTGGATGTTGGTGCGATGCGCGACGCTGCCTCCCTGCTGGTGGGGACCCATAACTTCAGCTCCTTCAGAGCCCTGAACTCTGAGACACCATTTAAAGACCCGGTAAAGACCCTGGAGAAGGTCGGTCTGGAACTCGGAGACGCCTTTGTACACAAACACTTCCACagAGATATTCAGTTCTGGGAGCTCACCTTTAAGAGCAGATCCTTCCTCTACAAACAGgtgcgTAGGATGACAGGGGCTCTGGTGGCAGTTGGCCAGGGACAGATGTCTGTCTCTGGGGTGAAGGAATTACTGGAGGCCCAGGACTCTCAGGCCTACCCACACAACCTCACATCACCCCCAGAAGGACTCTTCCTCACCAGGGTGGAGTACCACCGGTCAGACCTGCAGCTTTACACTCAGGAGGATTCACAGAGCTGATTGTCGTTTTAATGACCTAGGCCCAAtcccaaatggacccctagacgTTACGCCCTACGCatttgtggagatctgagaggatttgaaAAGCAATTTACTAATACCTCCAATTTGCCCCTCTGATAGGCTaggtcaggggtgtcaaactaattTCATGGAGGgtctagtgtctgcaggttttagtTTTCTAACACCTAGACACCCAGGTGAGGGGAGGTctttactgagacctagacaaccaggtgaggggagttccttactgagacctagacaaccaggtgaggggagttccttactgagacctagacaaccaggtgaggagagttccttactaagacctagaca
>TU748611
CATTTAaagttaggtttaaggttagcagcgtggaaaatgtaaggaggaaggttagggctaggtttaAACTCACATTTGAAGAAGATCAATTGTAGAAACAGGCGGTTTTTTgtggactttgtggctgtggtaactagtagTGACCATGTCGCGTTGCGTGTGAAGTTGAAGGTGTACAATGGGGATTTTTCTGTGGAATTATCAAACATAACCTCTGTCAAATCTCTCTTTGTTAAAATAGAAAACGGCAACAAGCAGAGGTTCAGGTTGGGGCACATTTTGCCCAATATAGCCTTTGAGTTGCAAAACAGGAGTTTGTCTTTGAAGCAGTGGTCAATGATCATGCACAATGGCCGTGTCCGTTATCTCATCTTCTTCCAATACCTCGGGACAAAGTACAGTGGCGTTATGAAGGCGCCTCCACACCAAGCAGTCAA

Function

symbol description
pusl1 Predicted to enable RNA binding activity and tRNA pseudouridine synthase activity. Predicted to act upstream of or within pseudouridine synthesis and tRNA processing. Orthologous to human PUSL1 (pseudouridine synthase like 1).

NR:

description
tRNA pseudouridine synthase-like 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984264.1 False 1518 mRNA 0.49 9 85551793 85617509
XM_036984263.1 False 1655 mRNA 0.50 9 85551793 85617931
XM_036984265.1 False 1505 mRNA 0.49 8 85551793 85617931
TU748611 True 437 lncRNA 0.43 2 85551879 85552463

Neighbor

gene id symbol gene type direction distance location
LOC110528636 LOC106583767 coding upstream 188110 85301554 ~ 85363683 (+)
LOC110528638 NA coding upstream 254109 85294228 ~ 85297684 (+)
amigo3 amigo3 coding upstream 642432 84904628 ~ 84909361 (+)
LOC118965371 NA coding upstream 1150274 84372197 ~ 84401519 (+)
LOC110528627 stl3 coding upstream 1670207 83878342 ~ 83881586 (+)
tamm41 tamm41 coding downstream 13047 85630978 ~ 85648641 (+)
vgll4b vgll4 coding downstream 31914 85649845 ~ 85744794 (+)
LOC110528658 slc6a1 coding downstream 400144 86018075 ~ 86033561 (+)
atp2b2 LOC106566233 coding downstream 484332 86102263 ~ 86305534 (+)
slc6a11b slc6a11 coding downstream 726794 86344725 ~ 86406029 (+)
G658490 NA non-coding upstream 895 85549950 ~ 85550898 (+)
G658488 NA non-coding upstream 4034 85546647 ~ 85547759 (+)
G658462 NA non-coding upstream 23621 85527827 ~ 85528172 (+)
G658434 NA non-coding upstream 71341 85480030 ~ 85480452 (+)
G658419 NA non-coding upstream 105256 85446114 ~ 85446537 (+)
G658525 NA non-coding downstream 5286 85623217 ~ 85624038 (+)
G658481 NA non-coding downstream 19396 85637327 ~ 85638295 (+)
G658532 NA non-coding downstream 36603 85654534 ~ 85654853 (+)
G658534 NA non-coding downstream 38828 85656759 ~ 85671280 (+)
G658553 NA non-coding downstream 75095 85693026 ~ 85693329 (+)
G657481 NA other upstream 544295 85006479 ~ 85007498 (+)
G657292 NA other upstream 933076 84612829 ~ 84618717 (+)
G657254 NA other upstream 997020 84551996 ~ 84554773 (+)
G657228 NA other upstream 1031375 84503549 ~ 84520418 (+)
G656551 NA other upstream 1991275 83558837 ~ 83560518 (+)
G658885 NA other downstream 268661 85886592 ~ 85887121 (+)
G658887 NA other downstream 277895 85895826 ~ 85896149 (+)
G659058 NA other downstream 790771 86408702 ~ 86412974 (+)
G659136 NA other downstream 903129 86521060 ~ 86521822 (+)
G659706 NA other downstream 1482533 87100464 ~ 87102270 (+)
G658460 NA non-coding downstream 7233 85559696 ~ 85561213 (+)
G658505 NA non-coding downstream 29604 85582067 ~ 85614977 (+)
G658515 NA non-coding downstream 43150 85595613 ~ 85596307 (+)

Expression


Co-expression Network