vgll4b (vgll4)


Basic Information

Item Value
gene id vgll4b
gene name vgll4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85649845 ~ 85744794 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610783.2
CGCTCTCCACTTTCACCACCTGCTAGGAAGAGAATTCTATCATTCCAAACATTCTTCCCCCTTTCGTTTACAACGAAGTTCGTAAGTTTTTGTTGTCGGACCGCTTAGCCATTGTTTTCCCACTCACCTCGGACACAAAACAATTAAATTGGTCCGTTGCTTCCTGCCCCCCCTGTGGATTCAAACGGAGCCAGGATTGTTAGCGTTATTATCGGCGCGAATATAACTCCGAAGATCCCAAAGTGGCGCTCTAAGGAAGGCGGTCTAAGGAAGGTGGTTTGTTGTGAAGAATGGAGACGCCATTGGATGTTCTGTCTAGAGCTGCGTCGTTAGTGCACGAGGATGATGAGAAACgtGAGGCAGCCCTGCGAGGTGACCCCAGGATGCACCAGTCCATGTCCCTGTCATCATCTGGCGGCACCAACCATAGTCACCGAACAGGTCCTCCTCCCATCAGCCCTGGCAAGAGGAAGCACAGTCTCAGCACAGGACAggaccaacaggacaatgatgacCAAGACTGTGACAACCAACACGTGGCCAAGATGAGCCGGCTGTTTGCTGCACAGCTAGGCAACTATCGTAGTTCCAAGGACCCAAGGGACCGCAGCCGTAGCCCCATAGAGAGAGCCGCCGCACCCTCCATGGGTCTCCATGGCAACCACCACCTGTACACCCCCCACCGCCACATGCCCTGCCTGGCCATGGACCAGCCTCTCGCCCTGACTAAAAACAACATGGACGCCGCCCGCACCCTCGCCATCTCGCCCACCGTCAGTCCTGTGGAACGccagcagaatcGTCCGTCAGTGATAACGTGCGCTCCGGCCAACAACCGTAACTGTAACCTGCCTAACAACGGCTGTTCCAACAACCTGCCTAACAACGGCTGTTCCAACAACTACAGCAGGAGACCAGCCAGCAACTcCAACTCGGCGTGTGTTGACCCGGTGATCGAGGAGCATTTCCGTCGCAGCCTGGGGAGGAACTACAAGCAGCCGGAACCCGTCACTAACTCTGTGTCCATCACCGGCTCTGTGGACGACCATTTCACCAAGGCCTTAGGAGAAACCTGGCTGCAGATCAAAGCCAAAGgaagctcctcctcctcccctgacTCCTCCCCCAACAGTCACATGGTCAACCACAACCACTCCCCTTCGGTTGTGTCCTGAAGGGAGGAGCTTGAGTAGGCCAATCAGAGCCAGTTATACCCCGCCCTGTTCACTGTAACCACAGGGCTGGTTGAACCGCTACTGGGAgggtattgtttgttttgctcCAGCCCTACACTAACGCCATCTAACACACCTGGAGCAAAAGATACGGAGGAGTAACTGATTTTAGATCAGGGTCGTATTCGCTTCCTTTTCTGTTGTTTAATTAGCTATAATGTGCACAAATGCATACGACCCTGCTTTATAACAGGGCTGGAGTAAAACCCTGCATCCTCCAGTAGCTCTCTGGCCTTGGTCCCTGGTAATGACTACCCTGAATGATTTTGGCCCCACAGAGAGCTGTGTTAATAGCTAGCTATATAGCCGTGTACATAGAGGATAGAGGGGGGCGTTTCCTTTTTGGCATTTAGTTGGATTGTATTATTTGGTTGAAGTAGGTTTGTGTTATTGGATGCCCAAAAAACGTTGACAACAAAAGCGTTTGTTTCTATCCTGTGGATTCTCTATGGAGAAGCAGCTCAACCAACCACATGCCTTCGTTACCAAAGAGAAACTCGGATGCAAATCTGTCACCCCATTTAACAAAGAAAAGAAAAAGCCATTATTTTATTTCCCTTTTCCATCtctctagcaccccactgtaaagtatcgtctcccgtcctctaccctcctcttctctagcaccccactgtaaagtatcgtctcccgtcctctaccctcctcttctctagcaccccactgtaaagtat
>XM_021610782.2
GGCCCCCTGGAGTGCCCATGTGTTGGTAATCCAGCCCTGTAtattttccctctctcaccccttacTGGTCCTGCATTTGGACGGTTGATCTTGTGAAGAAAAAAGAATCCCTGACATCTGAGGAGCTCCCGGGATTTATCAAGCATGCCTAGTGGTCGCAGCCTGCTCTGAGGAAACGGGTGTACATTCGAGTCATACCAAGCTGAGCCTGCGTGTCAGTACAGTCGACTTTACAGCTGGCTGTAAGGTTAGGAAGAACTGGCGCTACCTTTTTAGTCTGAACATACATTTATACATTCTTTTACAAGTATTATACAAACTCCATTTTTAATTTTTGTCGGGAACTATTTTTTAAAGCGTTTTACCTTGATTCGATGATATTATTTTTGCGCGCAGAAAACTTGAGCTGAAGGCTGGGCCTTTTAACTGCTCTGTGTCGACCGACGTAAATTAAACCGACTGCGGCCGCCTCATTTTCCTCTCGACTCGGGTTGGAAGCAAAAATAAAGCaggtcttttttgttgttgttgcctaaaCTGTTAAATGCTTGTTACAAAAATGGATCTGTTGAATTATCAgtacctggacaaaatgaacaacaACATCGGCATACTCTGCTATGAAGgtGAGGCAGCCCTGCGAGGTGACCCCAGGATGCACCAGTCCATGTCCCTGTCATCATCTGGCGGCACCAACCATAGTCACCGAACAGGTCCTCCTCCCATCAGCCCTGGCAAGAGGAAGCACAGTCTCAGCACAGGACAggaccaacaggacaatgatgacCAAGACTGTGACAACCAACACGTGGCCAAGATGAGCCGGCTGTTTGCTGCACAGCTAGGCAACTATCGTAGTTCCAAGGACCCAAGGGACCGCAGCCGTAGCCCCATAGAGAGAGCCGCCGCACCCTCCATGGGTCTCCATGGCAACCACCACCTGTACACCCCCCACCGCCACATGCCCTGCCTGGCCATGGACCAGCCTCTCGCCCTGACTAAAAACAACATGGACGCCGCCCGCACCCTCGCCATCTCGCCCACCGTCAGTCCTGTGGAACGccagcagaatcGTCCGTCAGTGATAACGTGCGCTCCGGCCAACAACCGTAACTGTAACCTGCCTAACAACGGCTGTTCCAACAACCTGCCTAACAACGGCTGTTCCAACAACTACAGCAGGAGACCAGCCAGCAACTcCAACTCGGCGTGTGTTGACCCGGTGATCGAGGAGCATTTCCGTCGCAGCCTGGGGAGGAACTACAAGCAGCCGGAACCCGTCACTAACTCTGTGTCCATCACCGGCTCTGTGGACGACCATTTCACCAAGGCCTTAGGAGAAACCTGGCTGCAGATCAAAGCCAAAGgaagctcctcctcctcccctgacTCCTCCCCCAACAGTCACATGGTCAACCACAACCACTCCCCTTCGGTTGTGTCCTGAAGGGAGGAGCTTGAGTAGGCCAATCAGAGCCAGTTATACCCCGCCCTGTTCACTGTAACCACAGGGCTGGTTGAACCGCTACTGGGAgggtattgtttgttttgctcCAGCCCTACACTAACGCCATCTAACACACCTGGAGCAAAAGATACGGAGGAGTAACTGATTTTAGATCAGGGTCGTATTCGCTTCCTTTTCTGTTGTTTAATTAGCTATAATGTGCACAAATGCATACGACCCTGCTTTATAACAGGGCTGGAGTAAAACCCTGCATCCTCCAGTAGCTCTCTGGCCTTGGTCCCTGGTAATGACTACCCTGAATGATTTTGGCCCCACAGAGAGCTGTGTTAATAGCTAGCTATATAGCCGTGTACATAGAGGATAGAGGGGGGCGTTTCCTTTTTGGCATTTAGTTGGATTGTATTATTTGGTTGAAGTAGGTTTGTGTTATTGGATGCCCAAAAAACGTTGACAACAAAAGCGTTTGTTTCTATCCTGTGGATTCTCTATGGAGAAGCAGCTCAACCAACCACATGCCTTCGTTACCAAAGAGAAACTCGGATGCAAATCTGTCACCCCATTTAACAAAGAAAAGAAAAAGCCATTATTTTATTTCCCTTTTCCATCtctctagcaccccactgtaaagtatcgtctcccgtcctctaccctcctcttctctagcaccccactgtaaagtatcgtctcccgtcctctaccctcctcttctctagcaccccactgtaaagtat

Function

symbol description
vgll4 Predicted to enable transcription coactivator binding activity. Involved in negative regulation of Wnt signaling pathway; negative regulation of cell growth; and negative regulation of hippo signaling. Predicted to be located in nucleus.

NR:

description
transcription cofactor vestigial-like protein 4 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610783.2 False 1927 mRNA 0.52 6 85649845 85744794
XM_021610782.2 True 2199 mRNA 0.50 5 85696536 85744794

Neighbor

gene id symbol gene type direction distance location
tamm41 tamm41 coding upstream 1204 85630978 ~ 85648641 (+)
pusl1 pusl1 coding upstream 31914 85551793 ~ 85617931 (+)
LOC110528636 LOC106583767 coding upstream 286162 85301554 ~ 85363683 (+)
LOC110528638 NA coding upstream 352161 85294228 ~ 85297684 (+)
amigo3 amigo3 coding upstream 740484 84904628 ~ 84909361 (+)
LOC110528658 slc6a1 coding downstream 273281 86018075 ~ 86033561 (+)
atp2b2 LOC106566233 coding downstream 357469 86102263 ~ 86305534 (+)
slc6a11b slc6a11 coding downstream 599931 86344725 ~ 86406029 (+)
LOC110488455 LOC106583799 coding downstream 1240757 86985551 ~ 87051602 (+)
LOC110488454 NA coding downstream 1260122 86927892 ~ 87007309 (+)
G658481 NA non-coding upstream 11550 85637327 ~ 85638295 (+)
G658525 NA non-coding upstream 25807 85623217 ~ 85624038 (+)
G658505 NA non-coding upstream 34868 85582067 ~ 85614977 (+)
G658515 NA non-coding upstream 53538 85595613 ~ 85596307 (+)
G658460 NA non-coding upstream 88632 85559696 ~ 85561213 (+)
G658476 NA non-coding downstream 1530 85746324 ~ 85747415 (+)
G658477 NA non-coding downstream 3884 85748678 ~ 85748957 (+)
G658482 NA non-coding downstream 4246 85749040 ~ 85749631 (+)
G658479 NA non-coding downstream 7046 85751840 ~ 85752196 (+)
G658473 NA non-coding downstream 7739 85752533 ~ 85755552 (+)
G657481 NA other upstream 642347 85006479 ~ 85007498 (+)
G657292 NA other upstream 1031128 84612829 ~ 84618717 (+)
G657254 NA other upstream 1095072 84551996 ~ 84554773 (+)
G657228 NA other upstream 1129427 84503549 ~ 84520418 (+)
G656551 NA other upstream 2089327 83558837 ~ 83560518 (+)
G658885 NA other downstream 141798 85886592 ~ 85887121 (+)
G658887 NA other downstream 151032 85895826 ~ 85896149 (+)
G659058 NA other downstream 663908 86408702 ~ 86412974 (+)
G659136 NA other downstream 776266 86521060 ~ 86521822 (+)
G659706 NA other downstream 1355670 87100464 ~ 87102270 (+)

Expression


Co-expression Network