atg7 (atg7)


Basic Information

Item Value
gene id atg7
gene name atg7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85764638 ~ 85855852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984267.1
TCCTCATTTGTCTTCCTTACAGAAGACACATGCGACTATGTCCCCTTCTTTTTGGCCTGTTTGAAGGACTATCCGTCAACTTACTTCCTGGTGCTTTTTTGTTTGTTCATTAATTAGTTAGGTAGTTGGGTTGTTATTAACTCGGCATTATTGCTAActagcaaaaaaacaaacattgataGTTTTATTGGCTCATCCGGGCAGCAGAGTAGTAACGTCGAGATGAGGAGTGGAGCCTACAAGTTTCTGTCCGTTTTTTCTTGTCTCATTGTTTGCGGTTTCATGTTCATGTTTTGGTTTTTCGTTTTTTACTCCATGGTACTTGCGCCATAATTTACAACtggaatgtattattattattattatttatttttttacagttagctagctatttAGCACAGACAGCTAGCTAAATTCGCTAACGTTAAGATTTACCAAGTCGACATTGGCGATTTTGTCCCCCCCACGAAGCAACCCACACTGACAAGTTGTAGCCAGTAAAAAGATTGAGTCCGAATTTACTTGGCTACATAACAATCAACAGAAAGAGACAAATGTAGCAACTGAACGgctagttagctaacagctaATTGGTGTACTTGGGTTAGCGAACGGCTaaccatctagctagctaacggctAACTGGGGTATTTGGGTTAGCGATCGGCTAACCATCTAGTTAGCTAACGTCTAACTGATGTATTTGGGTTAGCGAACGGCGAACTAACGGCTAACCAGCTAGTTAGCGAACGGCTACATAGCAACAACATTGTGCACGTACCCATAGTGCATTGCGGCAACGACAGATCACATGATCTGAATAAGGAAGCGAGGTGTATTTGGGAGTGTATCTGAGCATCAAGGAACAGGATCGGTGATAGAGATGGCTTCTGTGCCCGTAGACAAAGACAGTGCGGATCAAAAGCTGCAGTTTGCTCCCTTCTCCAGTGCCTTAGAGGCAGGCTTCTGGCACCAGCTCACTCAGAAGAAACTCAACGATTACCGACTGGATGAAAGCCCGAAGAATATCAAAGGCTACTACTACAATGGCGATCCGGTCGGCCTCCCCACTCGCCTGACTTTGGAGTTTAGTGCATTTGAGGCGGATGGCCCCAGCCCAGCCCGCTGCTGTCCCGTCACAGGGACCCTGTACAACACCAACACACTAGAGGCCTTTAAGACCTCAGACAAAAAAGCACTGCTGGAACAACAGGCCACGGAGATTTGGGATTCCATAAAGTCCGGTGATGCTCTCAAGGACCCATCCCTCCTCTGCAAATTCCTTTTGCTGACTTATGCAgACCTGAAGAagtaccacttctactactggtTCTGTTTCccagctctctgtttctctgagggAATTAAGATCCTCAAGGAGCCGGCTACGTTAGATCAAGTCTTCTCTTCTAAACAGACCTCAGCCTTACAGGCAGCCTATGACAGTCTGTGCGGTGAAACAGGGACCTCAGCTGTTCCTTACTTCCTGATCAAGTACACAGGGGATACTGTCCAGGTGGCCCAGCTACGAGACTGGGACAGCTTCAACACTGATCTCAACAAGGTAACCGTGGGTGTGTATGACCCCTGCACTCTGCCCCAGCATCCTGGATGGCCTCTGAGGAATCTGCTGTTTCTCCTAGCCAGCAAATGgggCTCCCAACTAGATGTGGTGGAGGTGATGTGTTTCAGAGACAGGACTCTTCAGGGCAGTAGGAACATTCAGCACAGCATCGTGTTCCAGGTCAAACTACCGATCCCTGAGCAGTCTCTCAatgcagCGTGTCCAAAGAATGTAGGATGGGAGAAGAACCCTAAAGGAGCCATGGGACCCCGGATGGTCAACCTCAGTGAATGTATGGACCCAAAGAGACTGGCCGAGTCCTCGGTGGACCTCAACCTGAAGTTGATGCGCTGGAGGCTGGTACCTTCTCTGAATCTGGACAAAGTGACTTCAACTAAGTGTCTGCTGCTGGGAGCTGGTACACTGGGCTGCAACGTAGCCAGGACTCTAATGGGATGGGGAGTGAGACACATCACGTTTGTGGACAACTCTAAGATCTCTTACTCCAACCCAGTCAGACAACCGCTGTATGAGTTTGAAGACTGTCTGGGAGGAGGCAAGTCCAAGGCCCTCGCTGCCGTCGACAGACTGGGCAAGATCTTCCCTGGAGTGAATGCAGAGGGACACGTGATGAGCATCCCTATGCCAGGCCACCCGGTCAACTTCTCTGAGGCGACCATGTCTCAGGCCCGGCAGGACGTTGAACACCTGGAGAAACTGATCTCGGAGCACGACGTCGTCTTCCTGTTGATGGACACAAGGGAGAGTCGATGGCTGCCGACTGTTATAGCTGCCAGCAATAGGAAGTTGGTAGTGAATTCTGCCCTGGGCTTTGACACCTTCGTGGTGATGAGACACGGTCTGAAGAAACCTAAACCCTGTGGACCAGGAGACTCCTCCgacccttcctcttcctcctccgcctcatcctcttcctccacgCCGGCCGAGCCCGCCCAGCTCCCAGCAGCCTCTCTTTTCTCCAACATCCCCGGACACCGCCTAGGATGCTACTTCTGTAACGACGTTGTCGCCCCCGGAGACTCCACCAGAGACCGGACCCTGGACCAGCAGTGTACAGTGAGTCGTCCAGGCCTGGCCATGATAGCAGGAGCCCTGGCTGTGGAACTCATGGTGTCCATACTACAGCATACTGAAGGaggTTATGCGGTGGCCAGCAGTAGTGATGACAGGATGAATGAAcctccaacctccctgggtctcgtccctcatcagATCAGAGGGTTTCTGTCCAGATTTGACAACGTTCTACCGGCCAGTCTGGCGTTCGACAAATGCACTGCCTGCTCACAAATCGTCCTGGACAGCTATGAGAAGGATGGTTTCAACTTCCTGTCCAAGGTGTTTAACTCCTCCCACTCCTTCCTGGAGGACCTGACTGGTTTGACTCAGCTACACCAGGAGACACAGAACGCAGagATTTGGGACATGAGTGATGATGAGAGCATCTGAGAGGGAGGACGGAACCCGAAACATCAGAGTTCTAGAATCGGAACACGGAACACATTCTGCTGCGTTCCAACACGGCGtcacttctcctctcttctggtCAGAGTTCAGGACATATATAATTGACCTTCTTCACGATTATTATTTTCTAAACCCCAGTTGGTGTTTACGTATGCCCCTGAAACAGTCTTAATGACGGCTAACAGCAGTTGAATTAAGAATATAGGGTCTTCCAGTATTTTCTGAAACTGTTTTTACGTTGGGTATCATCAGAAAGGATGAAAAAACATAATCTTTAAAATGCCACTGATAATATTACCATCTAATAAACATCTGAAATGGAAAGAATGTCTGTCGTGTTAAGGGAGAACCCCTCGCTTTATAACAGTGTCGCTCTCATGACAACTAATATGGTGAGACATTCTGTTCTATTCCTTCTATGTTCTGAAGGGGAATGTAAAGATATATTTTGAAGATTGCTGAAAATGTTTAAATGCTTTTCAGGCTATCTTGAATCATTTGTGTTATTTGTTTCCCAGATAAATTGTCCTGATTACGACCCGTACCCAGCTCACTGTCGGGAACGTATACATTTCCCAGATTGACCTTCTcctgtaacatacagtatatatatatatatataacacaggtACGCTCTTTACTATTGCTCTTCCAGTTTCAGGGACTTTTCACACATGTATGTCCATCCAGATGATTACACTGTGTAAATATGGCTTGATGTAGACATACACACCAGTACAACATACAATAGGAACTGCTTTACAACCCCGAGGGTAGGTACCACGGTTTGTGAAACACAGAATGATGCCACCACTCCGTACGTTTTCCATATTCTGTCATGTCGCATcttgtacttttttttttgtaGCATCTTTGTCAAGTACAGATAAAAGCCATATTTGACTCTTACATTGGatgtaaatcaaattaaatgttccCTGTGTG

Function

symbol description
atg7 Predicted to enable ubiquitin-like modifier activating enzyme activity. Acts upstream of or within autophagosome assembly; heart development; and mitophagy. Predicted to be located in cytoplasm. Is expressed in brain; liver; male organism; and muscle. Orthologous to human ATG7 (autophagy related 7).

NR:

description
autophagy-related protein 7

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0005737 cytoplasm cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08337 ATG7; ubiquitin-like modifier-activating enzyme ATG7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984267.1 True 4000 mRNA 0.47 19 85764638 85855852

Neighbor

gene id symbol gene type direction distance location
LOC118965326 NA coding downstream 206306 85557907 ~ 85558332 (-)
LOC110511195 LOC106583764 coding downstream 212918 85392855 ~ 85551720 (-)
ube2j2 ube2j2 coding downstream 376570 85375594 ~ 85388068 (-)
LOC110529054 ip6k1 coding downstream 493448 85201159 ~ 85271192 (-)
gmppb gmppb coding downstream 579984 85171118 ~ 85184654 (-)
hrh1 hrh1 coding upstream 837 85856689 ~ 85864549 (-)
LOC118965394 NA coding upstream 148996 86004625 ~ 86007056 (-)
slc6a1b slc6a1 coding upstream 661642 86517494 ~ 86549674 (-)
LOC110528661 dusp7 coding upstream 830420 86686272 ~ 86704088 (-)
LOC118965395 NA coding upstream 858427 86714279 ~ 86715176 (-)
G658732 NA non-coding downstream 70 85762731 ~ 85764568 (-)
G658847 NA non-coding downstream 14999 85748681 ~ 85749639 (-)
G658846 NA non-coding downstream 17222 85746245 ~ 85747416 (-)
G658845 NA non-coding downstream 19315 85745025 ~ 85745323 (-)
G658823 NA non-coding downstream 62323 85701934 ~ 85702315 (-)
G658886 NA non-coding upstream 30752 85886604 ~ 85886805 (-)
G658889 NA non-coding upstream 49781 85905633 ~ 85905843 (-)
G658891 NA non-coding upstream 82227 85938079 ~ 85939439 (-)
G659163 NA non-coding upstream 83826 85939678 ~ 85940374 (-)
G659165 NA non-coding upstream 85146 85940998 ~ 85941207 (-)
G658255 NA other downstream 757133 85006726 ~ 85007505 (-)
LOC110528632 LOC105007334 other downstream 1807870 83954195 ~ 84332909 (-)
G656671 dag1 other downstream 2148640 83608532 ~ 83615998 (-)
G656314 NA other downstream 2436458 83327479 ~ 83328180 (-)
G655715 LOC106583745 other downstream 3431340 82328398 ~ 82333651 (-)
G659250 NA other upstream 304390 86160242 ~ 86160923 (-)
G659543 NA other upstream 776555 86632407 ~ 86633856 (-)
G659824 NA other upstream 1147884 87003736 ~ 87007292 (-)
LOC110528667 cenpp other upstream 1429049 87114104 ~ 87293966 (-)
LOC110528687 LOC106583825 other upstream 2397211 88253063 ~ 88345745 (-)

Expression


Co-expression Network