LOC118965394


Basic Information

Item Value
gene id LOC118965394
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86004625 ~ 86007056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052722.1
AACACACAGGGAAAACACACAGGGAAAACAAACAGGCAAAAACAACCCAGGAAAACACACAGGGGAAACACACAGGGAAACACACAGGGGAAACACACAGAGGTGCCTCTACTCACAGCACAACCCACAAAGGTATTCTATTGGAGAATACGGATATgttccccagcaagaaaaccAAAAACCTGTTGCTCAAATAGAAGggggaactaacaaagagtcactgacaacaaccaGAACTAAACAGatggggttttaggaggggttctgaaagacactcatgggggattccactgaaagttgactagcaacaactgggacctaaaagacacacATCCtgagacccactaaatctgcccactaagaggcaaacaaaagagaAACCCACCCCAAAGTTAGACAGGAAGTTGACCAAAGAATGGAGCAAAATGAAAACAGGGAAGATCAGATAAAGGAATGTTTGTCTAGAAATGAAAATAGGGagagacaactaaaggagttaaccCTTCACATCTCAGTAACACATATCGACTAACGAGGTGACTAACCAGCACATGAGTAACACATACCGACTAACAAGGTGACCAACCAGCACAGgagtaacacatactgactaacgagatgaccaaccagcacaggagtaacacatactgactaacgaggtgaccaaCCAGCACATGAGTAACACATACCGAATAATGAGGTGACCAACCAGCACAGGAGTAACACATACCGACTAACGAGGTGACCAACCAGCACATGAGTAACACATACCGACTAACGAGGTGACCAACCAGCACAGaagtaacacatactgactaacgaggtgaccaaccagcacaggagttacacatactgactaacgaggtgaccaaCCAGCACAGGAGTTACACATACCGACTAACGAGGTGACCAACCAGCACAGGAgttacacatactgactaacgaggtgaccaaccagcacaggagtaacacagactgactaacgagatgaccaaccagcacaggagtaacacatactgactaacgaggtgaccaaCCAGCACATGAGTAACACATACCGACTAATGAGGTGACCAACCAGCACAGGAGTAACACATACCGACTAACGAGGTGACCAACCAGCACAGaagtaacacatactgactaacgaggtgaccaaccagcacaggagttacacatactgactaacgaggtgaccaaCCAGCACAGGAGTTACACATACCGACTAACGAGGTGACCAACCAGCACAGGAgttacacatactgactaacgaggtgaccaaccagcacaggagttacacatactgactaacgaggtgaccaaCCAGCACAGGAGTTACACATACCGACTAACGAGGTGACCAACCAGCACAGgagtaacacatactgactaacgagctGACCAACCAGCACAGGAGTTACACATACTGACTAATGAGGTGACCAACCAGCACAGGAGTTACACATACCGACTAACGAGGTGACCAACCAGCACATgagtaacacatactgactaacgaggtgaccaaccagcacagaagtaacacatactgactaacgaggtgaccaac
>XR_005052723.1
AACACACAGGGAAAACACACAGGGAAAACAAACAGGCAAAAACAACCCAGGAAAACACACAGGGGAAACACACAGGGAAACACACAGGGGAAACACACAGAGGTGCCTCTACTCACAGCACAACCCACAAAGGTATTCTATTGGAGAATACGGATATgttccccagcaagaaaaccAAAAACCTGTTGCTCAAATAGAAGggggaactaacaaagagtcactgacaacaaccaGAACTAAACAGatggggttttaggaggggttctgaaagacactcatgggggattccactgaaagttgactagcaacaactgggacctaaaagacacacATCCtgagacccactaaatctgcccactaagaggcaaacaaaagagaAACCCACCCCAAAGTTAGACAGGAAGTTGACCAAAGAATGGAGCAAAATGAAAACAGGGAAGATCAGATAAAGGAATGTTTGTCTAGAAATGAAAATAGGGagagacaactaaaggagttaaccCTTCACATCTCAGTAACACATATCGACTAACGAGGTGACTAACCAGCACATGAGTAACACATACCGACTAACAAGGTGACCAACCAGCACAGgagtaacacatactgactaacgagatgaccaaccagcacaggagtaacacatactgactaacgaggtgaccaaCCAGCACATGAGTAACACATACCGAATAATGAGGTGACCAACCAGCACAGGAGTAACACATACCGACTAACGAGGTGACCAACCAGCACATGAGTAACACATACCGACTAACGAGGTGACCAACCAGCACAGaagtaacacatactgactaacgaggtgaccaaccagcacaggagttacacatactgactaacgaggtgaccaaCCAGCACAGGAGTTACACATACCGACTAACGAGGTGACCAACCAGCACAGGAgttacacatactgactaacgaggtgaccaaccagcacaggagtaacacagactgactaacgagatgaccaaccagcacaggagtaacacatactgactaacgaggtgaccaaccagcacaggagttacacatactgactaacgaggtgaccaaCCAGCACAGGAGTTACACATACCGACTAACGAGGTGACCAACCAGCACAGGAgttacacatactgactaacgaggtgaccaaccagcacaggagttacacatactgactaacgaggtgaccaaCCAGCACAGGAGTTACACATACCGACTAACGAGGTGACCAACCAGCACAGgagtaacacatactgactaacgagctGACCAACCAGCACAGGAGTTACACATACTGACTAATGAGGTGACCAACCAGCACAGGAGTTACACATACCGACTAACGAGGTGACCAACCAGCACATgagtaacacatactgactaacgaggtgaccaaccagcacagaagtaacacatactgactaacgaggtgaccaac
>TU749557
tgactaacgaggtgaccaaccagcacaggagttacacatactgactaacgaggtgaccaaCCAGCACAGGAGTTACACATACCGACTAACGAGGTGACCAACCAGCACAGGAgttacacatactgactaacgaggtgaccaaccagcacaggagttacacatactgactaacgaggtgaccaaCCAGCACAGGAGTTACACATACCGACTAACGAGgtgaccaaCCAGCACAGGAGTTACACATACCAACTAACGAGGTGACCAACCAGCAC
>TU749555
gagtaacacatattgactaacgaggtgactaacgaggtgaccaaccagcacaggagttacacatactgactaacgaggtgaccaaCCAGCACAGGAGTTACACATACCGACTAACGAGgtgaccaaccagcacaggagtaacacatactgactaacgaggtgaccaaccagcacagaagtaacacatactgactaacgaggtgaccaaccagcacagaagtaacacatactgactaacgaggtgaccaaccagcacagaagtaacacatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052722.1 False 1570 mRNA 0.47 3 86004848 86007056
XR_005052723.1 False 1447 mRNA 0.47 3 86004848 86007056
TU749557 False 272 lncRNA 0.50 2 86004625 86005277
TU749555 True 271 lncRNA 0.47 2 86005413 86005970

Neighbor

gene id symbol gene type direction distance location
hrh1 hrh1 coding downstream 140299 85856689 ~ 85864549 (-)
atg7 atg7 coding downstream 148996 85764638 ~ 85855852 (-)
LOC118965326 NA coding downstream 446516 85557907 ~ 85558332 (-)
LOC110511195 LOC106583764 coding downstream 453128 85392855 ~ 85551720 (-)
ube2j2 ube2j2 coding downstream 616780 85375594 ~ 85388068 (-)
slc6a1b slc6a1 coding upstream 510438 86517494 ~ 86549674 (-)
LOC110528661 dusp7 coding upstream 679216 86686272 ~ 86704088 (-)
LOC118965395 NA coding upstream 707223 86714279 ~ 86715176 (-)
poc1a poc1a coding upstream 716712 86723768 ~ 86820513 (-)
LOC110528663 LOC106583798 coding upstream 937741 86944797 ~ 86966992 (-)
G659194 NA non-coding downstream 3217 86001399 ~ 86001631 (-)
G659193 NA non-coding downstream 7524 85997075 ~ 85997324 (-)
G659189 NA non-coding downstream 13082 85990293 ~ 85991766 (-)
G659176 NA non-coding downstream 51450 85953176 ~ 85953398 (-)
G659174 NA non-coding downstream 52992 85951603 ~ 85951856 (-)
G659191 NA non-coding upstream 11022 86018078 ~ 86018588 (-)
G659225 NA non-coding upstream 89159 86096215 ~ 86097139 (-)
G659232 NA non-coding upstream 103447 86110503 ~ 86111818 (-)
G659260 NA non-coding upstream 192755 86199811 ~ 86201349 (-)
G659274 NA non-coding upstream 217876 86224932 ~ 86225216 (-)
G658255 NA other downstream 997343 85006726 ~ 85007505 (-)
LOC110528632 LOC105007334 other downstream 2048080 83954195 ~ 84332909 (-)
G656671 dag1 other downstream 2388850 83608532 ~ 83615998 (-)
G656314 NA other downstream 2676668 83327479 ~ 83328180 (-)
G655715 LOC106583745 other downstream 3671550 82328398 ~ 82333651 (-)
G659250 NA other upstream 153186 86160242 ~ 86160923 (-)
G659543 NA other upstream 625351 86632407 ~ 86633856 (-)
G659824 NA other upstream 996680 87003736 ~ 87007292 (-)
LOC110528667 cenpp other upstream 1277845 87114104 ~ 87293966 (-)
LOC110528687 LOC106583825 other upstream 2246007 88253063 ~ 88345745 (-)

Expression


Co-expression Network