LOC110528658 (slc6a1)


Basic Information

Item Value
gene id LOC110528658
gene name slc6a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86018075 ~ 86033561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984467.1
GATGCTCCTGCCTCAAACCCGCAGCGATCTCAGTGGTGGAAATGTTGGACACGGGGAGGGTCGACTTTCAGATGACATTGACGCTATGTAGATGAGAGCGGGGATTTGTGCTCCGTGGAACATCCCTGGCCGAAGTTAGACGGTGCTTCGAGGTGAAGCTGCTCCCTTTTCGCTGCGTTGTTTCCCCGCTCTGCTCTGCTTGGCTCTCTCCTTCAGCACCACCGAGCTAACGGACAGCACCACTCACCTTTCCCCTCCGGATCCTAGTTTGGTTCTGCTTCCCTTTATCTTCAAATGGAAAATCTTTTCTTCGGTCTGCTCCGGGAGAATCTGTAAGGACACAACTTTTAGATGAACGTACGGATACTATACCATCGCTAAAAATTCTGTCTGGTATAGAAGTTTGATTGTGCGGTTTCCCAACTGGCTCGGTGTTCCCGCGTCTTCTCCTGATTTCCTGCCCATCTAACCTTCCCTTGGCTTGGTAACGAACCGCGAAGCTGCTGTCTACGTGGACCGGTGGGGTTAAAATCTTCCGTCCGCCTTCCAGTCTTGTCAGGAAATCTAAatctaaacagagagacagagacatggcgACGAATGGTACTAAAGGCTCTGATGGACACGTTCTAACGGAGGTGAATGCCGAGCCTAACGACAAACCCAAAACCTTGGTCGTCAAAGTCCAGAAAAAGGACCTTCCCGAAAGAGAGAACTGGACTGGAAAATTTGACTTTCTCCTGTCTTGCGTCGGGTACGCAATTGGACTGGGAAATGTCTGGAGATTCCCTTATCTATGTGGGAAGAATGGAGGAGGGGCCTTCTTGATTCCCTACTTTTTGACGCTCATATTTGCTGGTATGCCCCTGTTTCTGCTTGAAACGTCCCTCGGTCAGTACACATCGATTGGAGGGCTTGGGGTGTGGAAACTGGCTCCCATGTTTAAAGGTGTTGGTCTGGCCGCTGCAGTGCTGTCTTTCTGGCTAAATATTTATTACATCGTCATCATTGCCTGGGCCATATACTATTTGTGGTCCTCCTTTACTACCGAGTTGCCATGGCAATCATGTGGAAATTCTTGGAACACAGAGCGATGTTACACCAACTACAGCATCCTGAACGCTGCCAACCTCACCAGTGCTGTTCAGGAATTCTGGGAGCGTAACATGCACCAGTTAACAGACGGTCTGGAGAAGCCTGGGGAGATCAGAGCGCCTCTAGCCATCACGCTGGCCATCGCCTGGGTCCTTGTCTATTTCTGTATCTGGAAAGGTGTCGCCTGGACTGGGAAGgtGGTGTACTTCTCAGCGACGTACCCCTACTTTATGCTCTTCATCCTCTTCTGCCGCGGCATCACTCTGCCCGGAGCCATCGATGGAATCCTCTTCTATATCACGCCCAACTTCGAGAAGCTCAAGGAATCAGAGGTGTGGTTGGATGCTGCCACTCAGATATTTTTCTCCTATGGGCTGGGGCTGGGATCACTGATTGCTCTGGGAAGCTACAACCCATTCAATAATAATGTTTACAGAGATTCTGTCATTGTGTGCTGCATCAACTCGTTCACCAGCATGTTCGCTGGCTTAGTCATCTTCTCCATTGTGGGCTTCATGGCCAACGTGACTAAGAGGCCTATAATAGAAGTAGCAGCCTCAGGTCCTGGCTTGGCGTTCTTGGCCTACCCTGAGGCAGTAACCCAGCTGCCGATCTCTCCTCTCTGGGCGATCCTCTTCTTCTCCATGTTGCTGATGCTTGGAATCGACAGTCAGTTCTGTACGGTGGAGGGGTTCATCACTGCGTTGGTGGATGAATTCCCCAGAGCTctgagaggaagaagagaactCTTCATCGCTGCCGTCTGCCTGGTCTCTTATATCATCGGCCTGTCCAACATcacacaggtacagtacacacacacacaggatgataTACAAAACAACACTACAAACAATAGAAAACATGGTCTGACACCACTGGGTTTGACTGACACCCTCTCAGTGGGCAAAACTGGTCGAAAAGACGTCAGGCTTCGACCAAATAACAACCGAAGCTATCGTCGTCGATGTCGTCATGAAAATACGTCTTTATCTGGTTGTCATCTCGACATTGCTTCAGCCAGAAAACCCCAATTTCAACCAGAAAAGGACGTCCCTCTAATGTCCCATGCCAGATATTGCCAGCTGAGACTAGACTTTGGGTGTATtgtatga

Function

symbol description
slc6a1 Enables gamma-aminobutyric acid:sodium symporter activity and sodium:chloride symporter activity. Involved in gamma-aminobutyric acid import; inorganic ion transmembrane transport; and response to inorganic substance. Is active in plasma membrane. Biomarker of temporal lobe epilepsy.

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984467.1 True 2210 mRNA 0.50 11 86018075 86033561

Neighbor

gene id symbol gene type direction distance location
vgll4b vgll4 coding upstream 273281 85649845 ~ 85744794 (+)
tamm41 tamm41 coding upstream 369434 85630978 ~ 85648641 (+)
pusl1 pusl1 coding upstream 400144 85551793 ~ 85617931 (+)
LOC110528636 LOC106583767 coding upstream 654392 85301554 ~ 85363683 (+)
LOC110528638 NA coding upstream 720391 85294228 ~ 85297684 (+)
atp2b2 LOC106566233 coding downstream 68702 86102263 ~ 86305534 (+)
slc6a11b slc6a11 coding downstream 311164 86344725 ~ 86406029 (+)
LOC110488455 LOC106583799 coding downstream 951990 86985551 ~ 87051602 (+)
LOC110488454 NA coding downstream 971355 86927892 ~ 87007309 (+)
si:dkey-42i9.4 btg1 coding downstream 1020953 87054514 ~ 87056155 (+)
G658927 NA non-coding upstream 4271 86011027 ~ 86013804 (+)
G658919 NA non-coding upstream 14113 86003731 ~ 86003962 (+)
G658918 NA non-coding upstream 16317 86001279 ~ 86001758 (+)
G658912 NA non-coding upstream 22384 85995405 ~ 85995691 (+)
G658904 NA non-coding upstream 43214 85968335 ~ 85974861 (+)
G658934 NA non-coding downstream 35949 86069510 ~ 86076719 (+)
G658962 NA non-coding downstream 96415 86129976 ~ 86131547 (+)
G658968 NA non-coding downstream 109565 86143126 ~ 86144535 (+)
G658973 NA non-coding downstream 118701 86152262 ~ 86152629 (+)
G658975 NA non-coding downstream 126730 86160291 ~ 86523925 (+)
G658887 NA other upstream 121926 85895826 ~ 85896149 (+)
G658885 NA other upstream 130954 85886592 ~ 85887121 (+)
G657481 NA other upstream 1010577 85006479 ~ 85007498 (+)
G657292 NA other upstream 1399358 84612829 ~ 84618717 (+)
G657254 NA other upstream 1463302 84551996 ~ 84554773 (+)
G659058 NA other downstream 375141 86408702 ~ 86412974 (+)
G659136 NA other downstream 487499 86521060 ~ 86521822 (+)
G659706 NA other downstream 1066903 87100464 ~ 87102270 (+)
nisch LOC106583810 other downstream 1351338 87346077 ~ 87387283 (+)
G660790 NA other downstream 2389203 88422764 ~ 88427927 (+)

Expression


Co-expression Network