Gene
RNA
| Item | Value |
|---|---|
| gene id | atp2b2 |
| gene name | LOC106566233 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 86102263 ~ 86305534 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: plasma membrane calcium-transporting ATPase 2 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036984269.1 | False | 5211 | mRNA | 0.52 | 22 | 86102263 | 86296811 |
| XR_005052685.1 | False | 5175 | mRNA | 0.52 | 23 | 86102263 | 86296811 |
| XM_036984272.1 | False | 4353 | mRNA | 0.55 | 24 | 86102264 | 86301437 |
| XM_036984273.1 | False | 4357 | mRNA | 0.55 | 24 | 86102264 | 86301438 |
| XM_036984275.1 | False | 4316 | mRNA | 0.55 | 24 | 86102264 | 86301467 |
| XM_036984274.1 | False | 4321 | mRNA | 0.55 | 24 | 86102264 | 86301475 |
| XM_036984276.1 | False | 5074 | mRNA | 0.52 | 20 | 86102265 | 86296811 |
| XM_036984268.1 | False | 8246 | mRNA | 0.47 | 22 | 86102265 | 86305534 |
| XM_036984270.1 | False | 8152 | mRNA | 0.47 | 21 | 86102266 | 86305534 |
| XM_036984271.1 | False | 8110 | mRNA | 0.47 | 20 | 86102266 | 86305534 |
| XM_036984277.1 | False | 8239 | mRNA | 0.47 | 22 | 86102266 | 86305534 |
| TU749155 | True | 419 | lncRNA | 0.40 | 2 | 86298684 | 86305325 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528658 | slc6a1 | coding | upstream | 68702 | 86018075 ~ 86033561 (+) |
| vgll4b | vgll4 | coding | upstream | 357469 | 85649845 ~ 85744794 (+) |
| tamm41 | tamm41 | coding | upstream | 453622 | 85630978 ~ 85648641 (+) |
| pusl1 | pusl1 | coding | upstream | 484332 | 85551793 ~ 85617931 (+) |
| LOC110528636 | LOC106583767 | coding | upstream | 738580 | 85301554 ~ 85363683 (+) |
| slc6a11b | slc6a11 | coding | downstream | 39191 | 86344725 ~ 86406029 (+) |
| LOC110488455 | LOC106583799 | coding | downstream | 680017 | 86985551 ~ 87051602 (+) |
| LOC110488454 | NA | coding | downstream | 699382 | 86927892 ~ 87007309 (+) |
| si:dkey-42i9.4 | btg1 | coding | downstream | 748980 | 87054514 ~ 87056155 (+) |
| ippk | ippk | coding | downstream | 760628 | 87066162 ~ 87106788 (+) |
| G658934 | NA | non-coding | upstream | 25544 | 86069510 ~ 86076719 (+) |
| G658927 | NA | non-coding | upstream | 88459 | 86011027 ~ 86013804 (+) |
| G658919 | NA | non-coding | upstream | 98301 | 86003731 ~ 86003962 (+) |
| G658918 | NA | non-coding | upstream | 100505 | 86001279 ~ 86001758 (+) |
| G658912 | NA | non-coding | upstream | 106572 | 85995405 ~ 85995691 (+) |
| G659053 | NA | non-coding | downstream | 27045 | 86332579 ~ 86337615 (+) |
| G659060 | NA | non-coding | downstream | 40625 | 86346159 ~ 86347408 (+) |
| G659063 | NA | non-coding | downstream | 44662 | 86350196 ~ 86350597 (+) |
| G659077 | NA | non-coding | downstream | 79409 | 86384943 ~ 86385460 (+) |
| G659058 | NA | non-coding | downstream | 103168 | 86408702 ~ 86412974 (+) |
| G658887 | NA | other | upstream | 206114 | 85895826 ~ 85896149 (+) |
| G658885 | NA | other | upstream | 215142 | 85886592 ~ 85887121 (+) |
| G657481 | NA | other | upstream | 1094765 | 85006479 ~ 85007498 (+) |
| G657292 | NA | other | upstream | 1483546 | 84612829 ~ 84618717 (+) |
| G657254 | NA | other | upstream | 1547490 | 84551996 ~ 84554773 (+) |
| G659136 | NA | other | downstream | 215526 | 86521060 ~ 86521822 (+) |
| G659706 | NA | other | downstream | 794930 | 87100464 ~ 87102270 (+) |
| nisch | LOC106583810 | other | downstream | 1079365 | 87346077 ~ 87387283 (+) |
| G660790 | NA | other | downstream | 2117230 | 88422764 ~ 88427927 (+) |
| G659029 | NA | non-coding | upstream | 19083 | 86277494 ~ 86279601 (+) |
| G659020 | NA | non-coding | upstream | 37316 | 86260749 ~ 86261368 (+) |
| G659019 | NA | non-coding | upstream | 40788 | 86256553 ~ 86257896 (+) |
| G658980 | NA | non-coding | upstream | 119483 | 86174953 ~ 86179201 (+) |
| G658979 | NA | non-coding | upstream | 121668 | 86169722 ~ 86177016 (+) |
