slc6a1b (slc6a1)


Basic Information

Item Value
gene id slc6a1b
gene name slc6a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86517494 ~ 86549674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984281.1
GTGCGGTTTCCCAACTGGCTCGGTGTTCCCGCGTCTTCTCCTGATTTCCTGCCCATCTAACCTTCCCTTGGCTTGGTAACGAACCGCGAAGCTGCTGTCTACGTGGACCGGTGGGGTTAAAATCTTCCGTCCGCCTTCCAGTCTTGTCAGGAAATCTAAatctaaacagagagacagagacatggcgACGAATGGTACTAAAGGCTCTGATGGACACGTTCTAACGGAGGTGAATGCCGAGCCTAACGACAAACCCAAAACCTTGGTCGTCAAAGTCCAGAAAAAGGACCTTCCCGAAAGAGAGAACTGGACTGGAAAATTTGACTTTCTCCTGTCTTGCGTCGGGTACGCAATTGGACTGGGAAATGTCTGGAGATTCCCTTATCTATGTGGGAAGAATGGAGGAGGGGCCTTCTTGATTCCCTACTTTTTGACGCTCATATTTGCTGGTATGCCCCTGTTTCTGCTTGAAACGTCCCTCGGTCAGTACACATCGATTGGAGGGCTTGGGGTGTGGAAACTGGCTCCCATGTTTAAAGGTGTTGGTCTGGCCGCTGCAGTGCTGTCTTTCTGGCTAAATATTTATTACATCGTCATCATTGCCTGGGCCATATACTATTTGTGGTCCTCCTTTACTACCGAGTTGCCATGGCAATCATGTGGAAATTCTTGGAACACAGAGCGATGTTACACCAACTACAGCATCCTGAACGCTGCCAACCTCACCAGTGCTGTTCAGGAATTCTGGGAGCGTAACATGCACCAGTTAACAGACGGTCTGGAGAAGCCTGGGGAGATCAGAGCGCCTCTAGCCATCACGCTGGCCATCGCCTGGGTCCTTGTCTATTTCTGTATCTGGAAAGGTGTCGCCTGGACTGGGAAGgtGGTGTACTTCTCAGCGACGTACCCCTACTTTATGCTCTTCATCCTCTTCTGCCGCGGCATCACTCTGCCCGGAGCCATCGATGGAATCCTCTTCTATATCACGCCCAACTTCGAGAAGCTCAAGGAATCAGAGGTGTGGTTGGATGCTGCCACTCAGATATTTTTCTCCTATGGGCTGGGGCTGGGATCACTGATTGCTCTGGGAAGCTACAACCCATTCAATAATAATGTTTACAGAGATTCTGTCATTGTGTGCTGCATCAACTCGTTCACCAGCATGTTCGCTGGCTTAGTCATCTTCTCCATTGTGGGCTTCATGGCCAACGTGACTAAGAGGCCTATAATAGAAGTAGCAGCCTCAGGTCCTGGCTTGGCGTTCTTGGCCTACCCTGAGGCAGTAACCCAGCTGCCGATCTCTCCTCTCTGGGCGATCCTCTTCTTCTCCATGTTGCTGATGCTTGGAATCGACAGTCAGTTCTGTACGGTGGAGGGGTTCATCACTGCGTTGGTGGATGAATTCCCCAGAGCTctgagaggaagaagagaactCTTCATCGCTGCCGTCTGCCTGGTCTCTTATATCATCGGCCTGTCCAACATcacacagGGTGGGCTGTACGTGTTCAAGCTGTTTGACTACTACTCAGCCAGCGGAATGTGCCTGCTCTTCCTGGTCTTCTTCGAGTGCGTCTCCATATCCTGGTTCTACGGTGCCGATAAGTTCCTTGCCAACATTGAGGAGATGATTGGCCACAAGCCCTGCCTGTGGTGGAAGCTCTGTTGGGTCGTGTTCACTCCTCTTATTGTGGCTGGAGTGTTCCTGTTCAGTGCTGTCCAGATGGTTCCTCTCACCATGAACAACTACGTGTTCCCGGCCTGGGGCCAGGGAGTAGGCTGGTGCATGGCGCTGTCCTCCATGCTCCTGATACCTGGATACATGGTCTATATGTTCCTCAACCTCAAGGGGGATTACAAAGAGCGTCTGCGGATAATGATCCAGCCCCCGATGATGGTGAAAGGAGAACGCCAGGAGAACGGCCCTGAGCAGACTGCAGCAGAAGCAGAGAACCTGGCCACTGAAGAGGCTTACATCTAAACCTTGTTACTACATCCTAAACCCTCGAGGGCAAACTCTCTGCAGAAAACAACGTAATCAAGGTGAAACGCAACCAAGGGATTCGTCTCAAATGGCACACAATTACCTATGTAGTTACACTGCTTTTTACCAGGGCCAATATAGATAGTGTTTCATATAGGTATTAGTCcttctgggccctggtcaaatggtaccctattccctctgggccctggtcaaatggtaccctattccccctgggccctggtcaaatggtaccctatttcctctgggccctggtcaaatggaaccctattccctctgg

Function

symbol description
slc6a1 Enables gamma-aminobutyric acid:sodium symporter activity and sodium:chloride symporter activity. Involved in gamma-aminobutyric acid import; inorganic ion transmembrane transport; and response to inorganic substance. Is active in plasma membrane. Biomarker of temporal lobe epilepsy.

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 1

GO: NA

KEGG:

id description
K05034 SLC6A1, GAT1; solute carrier family 6 (neurotransmitter transporter, GABA) member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984281.1 True 2285 mRNA 0.51 14 86517494 86549674
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118965394 NA coding downstream 510438 86004625 ~ 86007056 (-)
hrh1 hrh1 coding downstream 652945 85856689 ~ 85864549 (-)
atg7 atg7 coding downstream 661642 85764638 ~ 85855852 (-)
LOC118965326 NA coding downstream 959162 85557907 ~ 85558332 (-)
LOC110511195 LOC106583764 coding downstream 965774 85392855 ~ 85551720 (-)
LOC110528661 dusp7 coding upstream 136598 86686272 ~ 86704088 (-)
LOC118965395 NA coding upstream 164605 86714279 ~ 86715176 (-)
poc1a poc1a coding upstream 174094 86723768 ~ 86820513 (-)
LOC110528663 LOC106583798 coding upstream 395123 86944797 ~ 86966992 (-)
atrip atrip coding upstream 457764 87007438 ~ 87053874 (-)
G659400 NA non-coding downstream 7328 86509853 ~ 86510166 (-)
G659352 NA non-coding downstream 9088 86397563 ~ 86508406 (-)
G659385 NA non-coding downstream 35442 86481521 ~ 86482052 (-)
G659384 NA non-coding downstream 39910 86476840 ~ 86477584 (-)
G659348 NA non-coding downstream 104526 86405133 ~ 86412968 (-)
G659419 NA non-coding upstream 36915 86586589 ~ 86587058 (-)
G659421 NA non-coding upstream 43761 86593435 ~ 86593729 (-)
G659423 NA non-coding upstream 48003 86597677 ~ 86598003 (-)
G659553 NA non-coding upstream 113854 86663528 ~ 86666153 (-)
G659558 NA non-coding upstream 124967 86674641 ~ 86679930 (-)
G659250 NA other downstream 356571 86160242 ~ 86160923 (-)
G658255 NA other downstream 1509989 85006726 ~ 85007505 (-)
LOC110528632 LOC105007334 other downstream 2560726 83954195 ~ 84332909 (-)
G656671 dag1 other downstream 2901496 83608532 ~ 83615998 (-)
G656314 NA other downstream 3189314 83327479 ~ 83328180 (-)
G659543 NA other upstream 82733 86632407 ~ 86633856 (-)
G659824 NA other upstream 454062 87003736 ~ 87007292 (-)
LOC110528667 cenpp other upstream 735227 87114104 ~ 87293966 (-)
LOC110528687 LOC106583825 other upstream 1703389 88253063 ~ 88345745 (-)
G661128 NA other upstream 2209819 88759493 ~ 88759938 (-)

Expression

slc6a1b(slc6a1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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slc6a1b(slc6a1) Expression in each Bioproject

Bar chart with 10 bars.
slc6a1b(slc6a1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
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Co-expression Network