atrip (atrip)


Basic Information

Item Value
gene id atrip
gene name atrip
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87007438 ~ 87053874 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984286.1
GGATCGCTGTTTATGTTGAGGTCGTGAATAAGCAGCGTTGTGATTAGCTCATTCTGTAAAACGTTTGAAAGATGGTTTGATAGCTTGCTAACTGAGTTAGCCTGCAGCTATTTTTTTGtgaactttttattttatttttaggaATGCCTTCTAAATTGTGAGACGTGCGACAAATAACTAGCCAGAGGCTTGCTTTGAACCGCAATACCGGAGAGGTTCAGGTTGAATGGTTGAGTTCCCTGACCCACATTGACTGGCGCTAGTTAGCTTGCCAaagttcgctagctagctaaaaagTTTCTACTTGGCTATCCAAGCTACACGTTTTCTAGTAATTTTAGTGGCAAAAAAAGTAGTCGGACCCCTGGCCCGGTAACATGGCGTACCCACCCCGCAAGCGCCTCAAGGTGGTGAGCCCTGCGGCTCCATGTAACGACCCCTTCGGAGGTGACGATGACTTTACCCAGGATGATCTGGAAGAGATTGATATTATAGCATCACAGGCCGTCAACGGGGATCTAGCAGGACCAGGGCCAAGCTCCAAAGGGACGGGGATGGGACCCATTGGTCCTCGACCAGGGGAGTCGACGAAGCCGTATTCGGGGAGCAGACAACAACCCTCTGGTCTGGCTAGGAGTAACtccatgagagacagagagatccccGAGTTACCATGTAAAGACACATTCGGGAACAGACATCCGTCTAAGACTGACGGGGAGCATTTAAAGCAACTGGAAGCCCAACAAGCAGACCTCCAGAAAAAGCtaaaggaggtagaggaggagatccTGATGAAGAACGGAGAGATCAGAGTGCTGCGTGACTCCCTCAGGGCCGCCCAGCAGGAGAAGGAGACGCAAAGACAGGCTCAGCTCctcctggagagggagaagagagacactCAGAGCGAGAAGGAGAAGGAGCTCTCCAAGAAGGTGCAGTCCCTGCTGTCTGAGCTGCACTTCAAAGAGGCTGAGATGAACGAGATGAAGACTAAACTACAGAACGCAGAGAAAGGAAGGAAAGCAGTGGCTTCACCTGTCCCCAGAAACAGCCCCGGTCTGTCTGGTCCCACTGCCCTGCTGCAGGGTGCCGGTGGTGCCAGCAGCAGCCCTCGCTGTGTAGCCATTCCTGGAGGAACAGCCTTCATCACCAAGGAGACGTTTGGTGCCCAGCTGCCCTCTAGGTCAACGCCAGGCAAGACCCCGGGACCAGGACACCTCAGAGACGATGGAAAACAGTCCAGCGGCAGACAGGAAGTGACTCACTCAGACCCTTTTAACACATTCCAACCCTCTCATTATCAAGGCTCAGTGCTGTTAAGTCTGCTGTTACAGCATCCTTTAGACCCCAGCAGTCTGGGTCTGGGTCACCTGCTCTGCATCAGCCCTGACGCACTACCTGGTCTCCTGACCAACACCTGTCTCAGCTcAGGGTCTTCGGTTGGCTCCAGTTCCTCCTCGACAGAACCCAGGCTTGTTCCCCACCACAACAAGCCCCACAGCCAGCAGCCGCGCTTCAAACACTATCAGAACCTGGCCCTGTCTGGCCTCAACATGATGGCCCTGCCCAGACACCACACTGCCTTGCCTCCTGAGGACCCGCCCAACCCGAACCCTTCCCACTCTGCCCCTGCCCTGAAAAACAATACCAGGTCCTGTCCTGGTGctgtccacctcctccctctcctcgaCTACCACATCGGCCTGTTCTGCCAGAGTCTGGAGGCTATCGCCCTGGACGGCTCAGGGACAGGGTCTGGTAAGAGGACCCTGAGAGGGAGCTCTCTGTCCGGGTCGTCGGACGGCAGCCTGGCCTCCAGCGTGGAGGATTCCCTAGGCAGTCAGGAGGAGTTTGCCCTGGCAGCCCTGAAGGCCCTGCATCATACTGTGGCCCAGAGCTCTGAGGTCGTGAACACCCTGCTGGCCCTAACGCCTGGAGCAGAGGGGAGCCCTCCACAGGGTAACAGTAGACACGGGCCCATCCTGGCCTCAGGCCTGGCCCCCCTGCTGCCTGACACCTCCATCCAGCCTGGGACTTCTAGAACCTCTGAGACCCCAGTAGATGGCACCAGAGAGGGTCCggccctccaccctctcctcagGAAGCTCCTTCAGCTGTCAGACCCCTCCTTCTCCACCAGCGCTTTTCAGAGGGAGGCCCTGGTGCCTAGCAGTCTGACGACTCTCAACATGCTGCTGGAGAGAGCACAGGAGCGGCAGCTTTCCAGGTTCCAGTGTGTTGTGTCCAGTCCGGCTCTGTCTCGCTGCCTGTCTCTAGACTCGTCCTACCAGACCCTGTCTCTGTCGGTCTCCCTACTAGCTGGCCTGGCCCACAGCGATGAGCTAGCTTTTAGAATCTGCTGCCATACAGACTGGTGTCCGTTACTGAAGGTTTTCCAGTACATCACCTCCAGACCTGACAAGACCGTCACAGACTCTCACTGGTCACAGCTGGAGGTGGAGGTGGTGCGTTTCCTGACCAGTCTGTTCAATAGGAAGGCTTCCACGTGGAGTGTGTTTGTTGAGTCGTCCTGTCAGTGCCACAGTGAGGTAGTGAAGACCACAGTGGTGCTACTCCACAGGCAGTGGCTGGACCTCCGGGGCCGAGTGGAGGGGAGCCCAGGGGGCGAGGCAACGATCCAAAGCCCAGCGTGGTGCTCCTCTCCTGCGGTTGATCTGCTAAGGGAGGCTCTGATGCTGCTCCACTGGCTCTTCCTCAACAACAGTAGCTTCTCAGAGcactgtcttcctgtccttcACATGTATGACCAGATGATTCCTGCCATTAGAGACACCTTCAGGAGGATCCCCCACCTCTCAGAGAGTGAAGAATTGGCTTTGGATGAGATTTGTCGTCCTGAGTCTGAGGATACTGAAGATATGGACACTGGCTCCTGACCTGTTGTCCTACACCGGACTAGTGTTCagttgcccctagatgctgatcttgggtcagtttttgCAATTCCCCTCTACTAATGGTTTAGGTTAGGAGGGGGAAGAtaactgaattgaccccagccctgctaTGTACTGGGACCAGTTTCCCTATATAATGTGCTACAGTAGTGCCCAGAAAAGGGCCCTAATTGGGACGCAGGTAATATCTTGTTGGTTTTTCTGACAAATGTCTGACTGTTCTTGATATTGGAATGTGAAAATATTTTGTGATTACTGTACTGAGCTCTTTGTGAGTTTTTATTTGATTCCATTAAATAACATCAATGTTGCAAACGACAA

Function

symbol description
atrip Predicted to be involved in DNA damage checkpoint signaling and DNA repair. Orthologous to human ATRIP (ATR interacting protein).

NR:

description
ATR-interacting protein-like

GO: NA

KEGG:

id description
K10905 ATRIP; ATR interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984286.1 True 3245 mRNA 0.54 14 87007438 87053874

Neighbor

gene id symbol gene type direction distance location
LOC110528663 LOC106583798 coding downstream 40446 86944797 ~ 86966992 (-)
poc1a poc1a coding downstream 186925 86723768 ~ 86820513 (-)
LOC118965395 NA coding downstream 292262 86714279 ~ 86715176 (-)
LOC110528661 dusp7 coding downstream 303350 86686272 ~ 86704088 (-)
slc6a1b slc6a1 coding downstream 457764 86517494 ~ 86549674 (-)
LOC118965396 NA coding upstream 4394 87058268 ~ 87059864 (-)
LOC110528667 cenpp coding upstream 60230 87114104 ~ 87293966 (-)
wu:fb55g09 cl012 coding upstream 287315 87341189 ~ 87342665 (-)
si:dkeyp-87e7.4 LOC106583812 coding upstream 356306 87410180 ~ 87425169 (-)
LOC110528674 pdhb coding upstream 423515 87477389 ~ 87494213 (-)
G659846 NA non-coding downstream 60219 86946470 ~ 86947219 (-)
G659841 NA non-coding downstream 62926 86941822 ~ 86944512 (-)
G659619 NA non-coding downstream 118926 86888026 ~ 86888512 (-)
G659614 NA non-coding downstream 174036 86832731 ~ 86833402 (-)
G659567 NA non-coding downstream 239679 86705334 ~ 86767759 (-)
G659907 NA non-coding upstream 44001 87097875 ~ 87102174 (-)
G659925 NA non-coding upstream 74421 87128295 ~ 87128815 (-)
G659930 NA non-coding upstream 92815 87146689 ~ 87147130 (-)
G659936 NA non-coding upstream 104523 87158397 ~ 87159244 (-)
G659942 NA non-coding upstream 114638 87168512 ~ 87168790 (-)
G659824 NA other downstream 146 87003736 ~ 87007292 (-)
G659543 NA other downstream 373582 86632407 ~ 86633856 (-)
G659250 NA other downstream 846515 86160242 ~ 86160923 (-)
G658255 NA other downstream 1999933 85006726 ~ 85007505 (-)
LOC110528632 LOC105007334 other downstream 3050670 83954195 ~ 84332909 (-)
LOC110528687 LOC106583825 other upstream 1199189 88253063 ~ 88345745 (-)
G661128 NA other upstream 1705619 88759493 ~ 88759938 (-)
G661426 LOC106583832 other upstream 1999202 89053076 ~ 89061481 (-)
G661335 NA other upstream 2043173 88831729 ~ 89104274 (-)

Expression


Co-expression Network