aspn (aspn)


Basic Information

Item Value
gene id aspn
gene name aspn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87169591 ~ 87198009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984292.1
AATTCTGGCCCCGGTTCAAGTACTGATGAGAACCACATGACTGGCCGGTAACAATGCGTTTTCAGGACTAGCCAGCTATACagagatgtggtggtggtggtggtggtggtgatctCTGTatctgtgtgagagagcgagcgagagagagagagagagagtgataggtctttattcaaaccaagctctCCATGTtagcagcaccagcagcagcagcagaggtttATTTTTCATTCAGAGAGTTAGCGTTTCTGTCTGATGCACATCCACTGTGACTGACGCTCCTGTTCCCGCACACTACTGCTACCTTTGTGGTTAGAGGAACTCTCTTTGGTTCGTGGAGTTAAACAACGATACAACAACACTAAGTGACTACTGAGACCCACTAGTCTTCCTGATGAGAGGCTTCCTGCTGCTGTGTCTGCTGGCACTGGGCCATGCCAAGCCTTACCAGCCAATTAACGTCTTGGACTTCATGAGGGACCATGAAATCATGATGCAGGACGccgatgatgacgatgatgatgacgacAACGCCCTTACGGACTGCCCCTTCGGCTGCCAGTGCTCCCTACGGGTGGTGCAGTGCTCTGATCTAGGGTTGCTCTCCGTGCCCGAGAACATTCCCACCGACACGCTAATGATAGACCTCCAGAACAACGACATCACCGAGGTCAAGGAGGACGACTTCAAAGGCATTAACAAGATCTACGCCCTGTTCCTTGTTAACAACAAGATCTCGAAGATCCATCCCAAAGCTTTCCGTAACATGGATCGGCTACAGCTGTTGTACCTGTCCTACAACCAGTTGACACAGATACCTGCCAACCTACCCCGGAACATCCTGGAGCTGCGTATCCACGACAACAAGATCAGCAACATCCAGAAGGAGGCCTTCAAAGGGCTCAAGTCTGTGCATGTTCTGGAGATGAGTGCTAACCCGTTAGCTAACAACGGGATAGAGCTGGGAGCATTCGACGGCATGGAAACGCTGTATATCAGGATCGCGGAGGCCAAGCTCacagctgtccctaaagACCTCCCATCTTCACTCACAGAGCTTCACTTGGATTATAACAAGATCAGCAAAGTAGAAATTGAGGACTTTTTCagatataaaaaaatacaaagATTAGGACTGGGCTTCAACCAAATCAAGTTTGTTGAGAACGGCAGCTTCGCCAGTATACCCAACGTCCGTGAGATCCACCTGGATAACAACAAACTGAAGAAGGTTCCGCCCGGTCTCAACTCACTGCGGTATCTACAGGTGGTGTACCTCCATGCTAACAGCATCAGCAGTGTGGGGGTGAATGAGTTCTGCCCTGTCCGCTCCAGTGTTAAGAAGACCTTGTATACGGGCATCAGTCTGTTCTCTAACCCTGTTAAGTACTGGGACGTCCAGCCCGCCACTTTCCGCTGTGTGTCTGGACACAGAGGGGTTCATCTGGGCAACAACCGGAGGAagtaacatatacacacacacacacacacacacacacagggggattTAGCTGGGCAACAACCGGAGGaagtaacatacacacacacacacagacacacagggggaTTCAGCTGGGCAACAACCGGAGGAagtaacatatacacacacacacacacagggggattTAGCTGGGCAACAACCGGAGGAagtaacatatacacacacacacacacagggggattTAGCTGGGCAACAACCGGAGGAagtaacatatacacacacacacacacacagggggattTAGCTGGGCAACAACCGGAGGAAgtaacatacacacaccacacacacacacgcacacacacagggtgatTCAGCTGGGCAACAAccggaggaacacacacacacacacacacacacacacacacacacacagggggattCAGCTGGGCAACAACCGGAggaagtaacacacacacacacagggggattCAGCTGGGCAACAACCCGAAGAAGTAACACACACAATGGCACGGTGAAGTTCTAACCATATGGTCATATCTATCCTATATAGTTACAGATCTACAAGTGCCTACCTGCCTAGGGAATTGGGTGTCTGTCAGGATCACAAGCCATCCTATAGCGCCTCCTTCTGGTAGATTTCAGTAATACCCACCTCCTCAACACacaggattttttgttgttgttgtaaagaCCAACTCTTCGTTCCTCCTCAACGAGTCAACAAACGCATCCACCCCTGTTTGTACTTCCGTGTTTTAGTCGATATCTTTGTTTCTTCTCTGTTTAGGAATTAGTATAATCTGCTGGATATGTTGTCTTTGGATTTCTTTCTGACACTGCATGCCTCACTTTTATAATCTGCTAGATATAGCCTAAATAAAACTAGTTTTCATGGTGCTAATAaacgtatatatatatttacagaaACTAGTCAACGTTATATGTCTAGATGGTGATAAACATAAAATGACAGAAAATGCTAGTCAACTGTTACATTACATGGTCTACATGCTAAGCGTTTATATTTAAAGAAACTAGTCAACCTTTTACATGTCTACATGCTAAACGTTTATATTTAAAGAAACTAGTCAACCTTTTACATGTCTACATGCTAAGCGTTTATATTTAAAGAAACTAGTCAACCTTTTACATGTCTACATGCTAAACGTTTATATTTAAAGAAACTAGTCAACCTTTTACATGTCTACATGCTAAGCGTTTATATTTAAAGAAACTAGTCAACCTTTTACATGTCTACATGCTAAACGTTTATATTTAAAGAAACTAGTCAACTTTTTACATGTCTTCATTTGAACATGCTTATCTATCGCAGCATTACATGTATGTAACTGTTCTAATTAAATAAACTAGTTAAACTTTTTACATGTCTTCATTTGAACATGCTTATCTATCATAGCATTACATGTATGTAACTGTTCTAATTAAATAAACTTGACTTAGAATATT

Function

symbol description
aspn Predicted to enable calcium ion binding activity and collagen binding activity. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in axial vasculature; chondrocranium; and pharyngeal arch. Human ortholog(s) of this gene implicated in ankylosing spondylitis; degenerative disc disease; and osteoarthritis. Orthologous to human ASPN (asporin).

NR:

description
asporin

GO: NA

KEGG:

id description
K08120 ASPN; asporin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984292.1 True 2929 mRNA 0.45 8 87169591 87198009
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Neighbor

gene id symbol gene type direction distance location
ecm2 ecm2 coding upstream 12686 87116760 ~ 87156905 (+)
ippk ippk coding upstream 62803 87066162 ~ 87106788 (+)
si:dkey-42i9.4 btg1 coding upstream 113436 87054514 ~ 87056155 (+)
LOC110488454 NA coding upstream 162282 86927892 ~ 87007309 (+)
LOC110488455 LOC106583799 coding upstream 165186 86985551 ~ 87051602 (+)
ogna LOC106583805 coding downstream 34943 87232952 ~ 87249174 (+)
nol8 nol8 coding downstream 95955 87293964 ~ 87315116 (+)
nisch LOC106583810 coding downstream 148068 87346077 ~ 87387283 (+)
LOC110528678 dnase1l3 coding downstream 449008 87647017 ~ 87658838 (+)
LOC110528683 slmap coding downstream 753420 87951429 ~ 87953496 (+)
G659707 NA non-coding upstream 10453 87158416 ~ 87159138 (+)
G659722 NA non-coding upstream 18209 87150909 ~ 87151382 (+)
G659715 NA non-coding upstream 40592 87127906 ~ 87128999 (+)
G659711 NA non-coding upstream 54236 87115074 ~ 87115355 (+)
G659709 NA non-coding upstream 55391 87110230 ~ 87114200 (+)
G659760 NA non-coding downstream 192353 87390362 ~ 87390747 (+)
G659802 NA non-coding downstream 212187 87410196 ~ 87410990 (+)
G660087 NA non-coding downstream 278346 87476355 ~ 87477630 (+)
G660089 NA non-coding downstream 294816 87492825 ~ 87494292 (+)
G659706 NA other upstream 67321 87100464 ~ 87102270 (+)
G659136 NA other upstream 647769 86521060 ~ 86521822 (+)
G659058 NA other upstream 757006 86408702 ~ 86412974 (+)
G658887 NA other upstream 1273442 85895826 ~ 85896149 (+)
G658885 NA other upstream 1282470 85886592 ~ 85887121 (+)
G660790 NA other downstream 1224755 88422764 ~ 88427927 (+)
G660853 NA other downstream 1424304 88622313 ~ 88689342 (+)
G660886 NA other downstream 1493885 88691894 ~ 88694076 (+)
G661162 NA other downstream 1619076 88817085 ~ 88817655 (+)

Expression

aspn(aspn) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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aspn(aspn) Expression in each Bioproject

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aspn(aspn) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network